Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21560

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,661,556	+				-1.1
4,661,556	+				+1.2
4,661,556	+				-0.7
4,661,556	+				+0.1
4,661,557	-				-1.7
4,661,557	-				-0.9
4,661,563	+				-1.1
4,661,563	+				-2.1
4,661,563	+				-1.7
4,661,563	+				-0.1
4,661,564	-				+0.5
4,662,364	+				+1.9
4,662,468	+				-0.8
4,662,469	-				+0.1
4,662,469	-				-0.1
4,662,488	+				+2.0
4,662,488	+				-0.4
4,662,488	+				+0.3
4,662,488	+				+0.5
4,662,488	+				-0.2
4,662,488	+				-0.1
4,662,488	+				+0.4
4,662,489	-				-0.5
4,662,489	-				+2.0
4,662,489	-				-0.8
4,662,495	+				-2.6
4,662,495	+				+0.5
4,662,496	-				+2.7
4,662,499	+				+1.9
4,662,499	+				-2.1
4,662,499	+				-0.4
4,662,499	+				+0.7
4,662,500	-				+0.9
4,662,531	+				-1.9
4,662,639	+				-0.2
4,662,640	-				+1.0
4,662,841	+		DZA65_RS21560	0.22	+2.6
4,662,841	+		DZA65_RS21560	0.22	+0.4
4,662,841	+		DZA65_RS21560	0.22	+0.2
4,662,841	+				+1.1
4,662,841	+		DZA65_RS21560	0.22	+1.1
4,662,842	-		DZA65_RS21560	0.22	+0.3
4,662,842	-		DZA65_RS21560	0.22	-1.5
4,662,901	+		DZA65_RS21560	0.26	-0.4
4,662,910	+		DZA65_RS21560	0.26	-0.1
4,662,910	+		DZA65_RS21560	0.26	-0.2
4,662,943	+		DZA65_RS21560	0.29	-1.2
4,662,943	+		DZA65_RS21560	0.29	-1.2
4,662,944	-		DZA65_RS21560	0.29	+0.7
4,662,944	-		DZA65_RS21560	0.29	+1.1
4,662,944	-		DZA65_RS21560	0.29	-0.7
4,662,944	-		DZA65_RS21560	0.29	+0.5
4,662,944	-		DZA65_RS21560	0.29	+0.6
4,662,944	-		DZA65_RS21560	0.29	-0.5
4,662,990	+		DZA65_RS21560	0.32	+0.8
4,662,991	-		DZA65_RS21560	0.32	+0.2
4,662,997	+		DZA65_RS21560	0.32	+0.4
4,662,997	+		DZA65_RS21560	0.32	+1.1
4,662,998	-		DZA65_RS21560	0.32	+0.4
4,663,038	+		DZA65_RS21560	0.35	-0.2
4,663,038	+		DZA65_RS21560	0.35	-1.8
4,663,039	-		DZA65_RS21560	0.35	+1.2
4,663,039	-		DZA65_RS21560	0.35	+1.4
4,663,039	-		DZA65_RS21560	0.35	+1.0
4,663,309	+		DZA65_RS21560	0.53	-0.3
4,663,309	+		DZA65_RS21560	0.53	+0.3
4,663,309	+		DZA65_RS21560	0.53	+0.8
4,663,318	-				+1.1
4,663,438	-		DZA65_RS21560	0.62	-0.3
4,663,438	-		DZA65_RS21560	0.62	+0.8
4,663,474	+		DZA65_RS21560	0.64	+0.1
4,663,474	+		DZA65_RS21560	0.64	-2.4
4,663,474	+		DZA65_RS21560	0.64	+0.7
4,663,492	-		DZA65_RS21560	0.66	-0.9
4,663,563	+		DZA65_RS21560	0.70	-1.1
4,663,627	-		DZA65_RS21560	0.75	+0.6
4,663,855	+				-1.1
4,663,969	+				+0.3
4,663,969	+				+1.2
4,663,969	+				-0.2
4,663,970	-				+1.0
4,663,970	-				-0.5
4,663,970	-				+1.1
4,663,970	-				-1.2
4,663,970	-				+0.0
4,663,970	-				-0.6
4,663,999	+				-0.0
4,663,999	+				-0.7
4,664,000	-				-0.9
4,664,000	-				-0.4
4,664,000	-				-0.4
4,664,000	-				+1.5
4,664,037	+				-0.6
4,664,038	-				+1.8
4,664,040	+				+1.9
4,664,041	-				-0.7
4,664,041	-				-0.5
4,664,071	-				+2.7
4,664,078	-				+0.8
4,664,097	+				+0.1
4,664,097	+				-1.9
4,664,125	+				-0.9
4,664,126	-				-0.4
4,664,128	+				-3.4
4,664,128	+				+0.2
4,664,128	+				+0.8
4,664,128	+				+0.3
4,664,129	-				-1.5
4,664,138	-				+0.0
4,664,180	+				+0.4
4,664,180	+				-0.2
4,664,187	+				+1.2
4,664,187	+				-0.1
4,664,188	-				-0.5
4,664,188	-				-2.0
4,664,188	-				+0.3
4,664,253	+		DZA65_RS21565	0.14	+0.4
4,664,254	-		DZA65_RS21565	0.14	+0.1
4,664,269	+		DZA65_RS21565	0.16	+0.4
4,664,269	+		DZA65_RS21565	0.16	-0.9
4,664,290	-		DZA65_RS21565	0.18	-0.3
4,664,318	-		DZA65_RS21565	0.20	-0.6
4,664,370	+		DZA65_RS21565	0.25	-1.5
4,664,370	+		DZA65_RS21565	0.25	-0.7
4,664,370	+		DZA65_RS21565	0.25	+0.1
4,664,370	+		DZA65_RS21565	0.25	+1.0
4,664,371	-		DZA65_RS21565	0.25	+0.3
4,664,371	-		DZA65_RS21565	0.25	-0.3
4,664,371	-		DZA65_RS21565	0.25	+0.4
4,664,371	-		DZA65_RS21565	0.25	-1.1
4,664,448	+		DZA65_RS21565	0.32	+0.6
4,664,448	+		DZA65_RS21565	0.32	-1.5
4,664,449	-		DZA65_RS21565	0.32	+0.5
4,664,470	-		DZA65_RS21565	0.34	-1.6
4,664,567	-		DZA65_RS21565	0.43	+0.8
4,664,568	+		DZA65_RS21565	0.43	+0.5
4,664,568	+		DZA65_RS21565	0.43	-0.5
4,664,568	+		DZA65_RS21565	0.43	+0.1
4,664,568	+		DZA65_RS21565	0.43	-0.2
4,664,568	+		DZA65_RS21565	0.43	-0.9
4,664,568	+		DZA65_RS21565	0.43	+0.8
4,664,568	+		DZA65_RS21565	0.43	-0.9
4,664,569	-		DZA65_RS21565	0.43	-0.4
4,664,569	-		DZA65_RS21565	0.43	-0.1
4,664,569	-		DZA65_RS21565	0.43	+0.6
4,664,569	-		DZA65_RS21565	0.43	+0.5
4,664,569	-		DZA65_RS21565	0.43	+1.1
4,664,569	-		DZA65_RS21565	0.43	-0.3
4,664,569	-		DZA65_RS21565	0.43	+0.5
4,664,569	-		DZA65_RS21565	0.43	+0.6
4,664,569	-		DZA65_RS21565	0.43	+0.3
4,664,569	-		DZA65_RS21565	0.43	+2.0
4,664,569	-		DZA65_RS21565	0.43	+0.4
4,664,569	-		DZA65_RS21565	0.43	+0.4
4,664,590	+		DZA65_RS21565	0.45	+1.8
4,664,590	+		DZA65_RS21565	0.45	+1.1
4,664,591	-		DZA65_RS21565	0.45	-0.0
4,664,591	-		DZA65_RS21565	0.45	-2.3
4,664,591	-		DZA65_RS21565	0.45	-0.6
4,664,591	-		DZA65_RS21565	0.45	+1.0
4,664,610	+		DZA65_RS21565	0.47	-0.1
4,664,610	+		DZA65_RS21565	0.47	-0.9
4,664,611	-		DZA65_RS21565	0.47	+0.1
4,664,611	-		DZA65_RS21565	0.47	+0.5
4,664,611	-		DZA65_RS21565	0.47	-0.0
4,664,649	+		DZA65_RS21565	0.50	+0.3
4,664,650	-		DZA65_RS21565	0.50	-0.4
4,664,698	+		DZA65_RS21565	0.55	-1.9
4,664,698	+		DZA65_RS21565	0.55	-1.1
4,664,698	+		DZA65_RS21565	0.55	+0.5
4,664,698	+		DZA65_RS21565	0.55	-0.2
4,664,699	-		DZA65_RS21565	0.55	-1.2
4,664,699	-		DZA65_RS21565	0.55	-2.7
4,664,770	-		DZA65_RS21565	0.61	-0.1
4,664,817	+		DZA65_RS21565	0.66	-0.5
4,664,818	-		DZA65_RS21565	0.66	+0.1