Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21355

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,619,959	+		DZA65_RS21350	0.53	+0.1
4,619,960	-		DZA65_RS21350	0.53	-0.9
4,619,960	-		DZA65_RS21350	0.53	+1.7
4,620,008	+		DZA65_RS21350	0.56	-0.7
4,620,008	+		DZA65_RS21350	0.56	+0.7
4,620,008	+		DZA65_RS21350	0.56	+0.4
4,620,009	-		DZA65_RS21350	0.56	+0.3
4,620,009	-				+1.9
4,620,009	-		DZA65_RS21350	0.56	+0.7
4,620,011	+		DZA65_RS21350	0.56	-0.9
4,620,011	+		DZA65_RS21350	0.56	+1.1
4,620,011	+		DZA65_RS21350	0.56	+0.5
4,620,134	+		DZA65_RS21350	0.63	+0.3
4,620,134	+		DZA65_RS21350	0.63	-0.5
4,620,134	+		DZA65_RS21350	0.63	+0.0
4,620,134	+		DZA65_RS21350	0.63	-2.1
4,620,134	+		DZA65_RS21350	0.63	+0.5
4,620,134	+		DZA65_RS21350	0.63	+1.5
4,620,134	+		DZA65_RS21350	0.63	-0.6
4,620,134	+		DZA65_RS21350	0.63	+0.5
4,620,134	+		DZA65_RS21350	0.63	-0.7
4,620,134	+		DZA65_RS21350	0.63	-0.2
4,620,134	+		DZA65_RS21350	0.63	-0.1
4,620,134	+		DZA65_RS21350	0.63	-2.0
4,620,134	+		DZA65_RS21350	0.63	-1.5
4,620,134	+		DZA65_RS21350	0.63	+1.4
4,620,134	+		DZA65_RS21350	0.63	-0.6
4,620,134	+		DZA65_RS21350	0.63	-0.3
4,620,134	+		DZA65_RS21350	0.63	+0.2
4,620,134	+		DZA65_RS21350	0.63	+0.3
4,620,134	+		DZA65_RS21350	0.63	+0.1
4,620,135	-		DZA65_RS21350	0.63	-1.9
4,620,135	-		DZA65_RS21350	0.63	-0.5
4,620,135	-		DZA65_RS21350	0.63	-0.2
4,620,135	-		DZA65_RS21350	0.63	+2.1
4,620,135	-		DZA65_RS21350	0.63	+2.1
4,620,135	-		DZA65_RS21350	0.63	-1.6
4,620,135	-		DZA65_RS21350	0.63	+2.3
4,620,135	-		DZA65_RS21350	0.63	-0.3
4,620,135	-		DZA65_RS21350	0.63	+0.5
4,620,135	-		DZA65_RS21350	0.63	-0.0
4,620,205	+		DZA65_RS21350	0.68	+0.3
4,620,205	+		DZA65_RS21350	0.68	+1.1
4,620,205	+		DZA65_RS21350	0.68	-0.6
4,620,205	+		DZA65_RS21350	0.68	+0.3
4,620,205	+		DZA65_RS21350	0.68	-1.2
4,620,205	+		DZA65_RS21350	0.68	-0.5
4,620,205	+		DZA65_RS21350	0.68	+0.3
4,620,205	+		DZA65_RS21350	0.68	-0.6
4,620,205	+		DZA65_RS21350	0.68	-1.7
4,620,205	+		DZA65_RS21350	0.68	-0.7
4,620,206	-		DZA65_RS21350	0.68	+1.3
4,620,206	-		DZA65_RS21350	0.68	-2.8
4,620,206	-		DZA65_RS21350	0.68	-1.5
4,620,206	-		DZA65_RS21350	0.68	-0.2
4,620,206	-		DZA65_RS21350	0.68	-1.1
4,620,206	-		DZA65_RS21350	0.68	-0.9
4,620,206	-		DZA65_RS21350	0.68	-0.3
4,620,206	-		DZA65_RS21350	0.68	+0.5
4,620,206	-		DZA65_RS21350	0.68	-0.1
4,620,206	-		DZA65_RS21350	0.68	-1.2
4,620,206	-		DZA65_RS21350	0.68	+1.4
4,620,206	-		DZA65_RS21350	0.68	-1.9
4,620,259	-		DZA65_RS21350	0.71	+0.4
4,620,271	-		DZA65_RS21350	0.72	-0.4
4,620,271	-		DZA65_RS21350	0.72	+1.1
4,620,397	+		DZA65_RS21350	0.79	+0.3
4,620,397	+		DZA65_RS21350	0.79	-0.1
4,620,397	+		DZA65_RS21350	0.79	-2.6
4,620,397	+		DZA65_RS21350	0.79	+1.1
4,620,397	+		DZA65_RS21350	0.79	-1.3
4,620,398	-		DZA65_RS21350	0.79	+0.2
4,620,398	-		DZA65_RS21350	0.79	+1.1
4,620,398	-		DZA65_RS21350	0.79	-0.3
4,620,398	-		DZA65_RS21350	0.79	-2.1
4,620,569	+		DZA65_RS21350	0.90	-0.5
4,620,635	+				+2.4
4,620,635	+				+0.8
4,620,636	-				+1.5
4,620,636	-				+0.4
4,620,636	-				+0.7
4,620,636	-				+1.9
4,620,647	+				+2.1
4,620,647	+				+0.5
4,620,647	+				+0.4
4,620,647	+				-0.2
4,620,648	-				-1.5
4,620,648	-				+0.7
4,620,648	-				-1.3
4,620,658	-				-0.1
4,620,658	-				+0.1
4,620,682	+				+0.1
4,620,683	-				+1.1
4,620,715	+				+1.8
4,620,715	+				-1.1
4,620,715	+				-0.7
4,620,715	+				-2.2
4,620,715	+				-0.5
4,620,716	-				-0.5
4,620,716	-				-0.5
4,620,716	-				+0.2
4,620,716	-				-0.9
4,620,716	-				-0.3
4,620,738	+				-0.9
4,620,738	+				-0.1
4,620,738	+				+0.6
4,620,738	+				+2.1
4,620,738	+				-1.7
4,620,738	+				-0.7
4,620,738	+				+0.3
4,620,738	+				+0.3
4,620,739	-				-0.7
4,620,739	-				-1.7
4,620,739	-				-1.7
4,620,739	-				-0.6
4,620,739	-				+0.6
4,620,739	-				+0.6
4,620,742	+				-0.5
4,620,742	+				+0.3
4,620,742	+				-0.4
4,620,742	+				-0.1
4,620,742	+				-0.5
4,620,742	+				-0.7
4,620,743	-				+0.1
4,620,743	-				+0.5
4,620,743	-				-0.2
4,620,743	-				-0.4
4,620,743	-				+2.1
4,620,777	+				+0.6
4,620,777	+				-0.5
4,620,778	-				-0.2
4,620,792	+				+1.0
4,620,792	+				+2.1
4,620,792	+				+0.7
4,620,792	+				+1.5
4,620,792	+				-0.1
4,620,792	+				-1.7
4,620,792	+				+1.7
4,620,793	-				+2.1
4,620,793	-				-0.1
4,620,793	-				-2.2
4,620,793	-				-2.2
4,620,796	+				+0.7
4,620,796	+				-0.2
4,620,796	+				-2.9
4,620,796	+				-0.1
4,620,797	-				-0.5
4,620,797	-				+0.3
4,620,797	-				-1.7
4,620,797	-				+2.6
4,620,797	-				-0.3
4,620,797	-				-1.5
4,620,797	-				-0.7
4,620,797	-				-0.2
4,620,797	-				-1.2
4,620,797	-				-1.1
4,620,797	-				+0.8
4,620,797	-				+0.7
4,620,879	+				-2.4
4,620,922	+		DZA65_RS21355	0.44	-2.2
4,620,922	+		DZA65_RS21355	0.44	+1.3
4,620,948	-		DZA65_RS21355	0.71	+0.8
4,620,948	-		DZA65_RS21355	0.71	+0.9
4,620,952	+		DZA65_RS21355	0.75	+1.2
4,620,953	-		DZA65_RS21355	0.76	+0.2
4,620,996	+				+0.2
4,620,997	-				-1.5
4,620,997	-				+0.8
4,620,997	-				+1.7
4,620,997	-				+0.8
4,621,010	+				-1.4
4,621,010	+				-0.5
4,621,011	-				-2.7
4,621,011	-				+1.6
4,621,014	+				-1.4
4,621,014	+				-1.0
4,621,014	+				+0.5
4,621,015	-				+0.4
4,621,015	-				+1.6
4,621,015	-				-0.9
4,621,022	+				+0.3
4,621,023	-				+0.0
4,621,073	-				+0.1
4,621,120	-				-0.7
4,621,230	+				+0.1
4,621,230	+				+0.3
4,621,230	+				+1.3
4,621,230	+				+0.6
4,621,230	+				+0.9
4,621,230	+				+0.1
4,621,230	+				-0.3
4,621,230	+				-0.7
4,621,230	+				-0.1
4,621,230	+				-1.2
4,621,230	+				-0.5
4,621,230	+				+1.3
4,621,231	-				-2.4
4,621,231	-				-1.5
4,621,231	-				+0.1
4,621,231	-				+1.5
4,621,231	-				-0.9
4,621,231	-				-0.1
4,621,231	-				+0.0
4,621,231	-				+1.0
4,621,231	-				-1.7
4,621,234	+				-0.5
4,621,234	+				-0.4
4,621,234	+				+0.1
4,621,234	+				+0.7
4,621,234	+				+0.3
4,621,234	+				+0.6
4,621,234	+				+2.9
4,621,234	+				+0.3
4,621,234	+				-1.5
4,621,235	-				-1.2
4,621,235	-				+0.3
4,621,235	-				-0.0
4,621,235	-				+0.5
4,621,235	-				-0.7
4,621,240	+		DZA65_RS21360	0.10	+0.5
4,621,253	+		DZA65_RS21360	0.11	-0.4
4,621,253	+		DZA65_RS21360	0.11	+0.6
4,621,253	+		DZA65_RS21360	0.11	+1.4
4,621,253	+		DZA65_RS21360	0.11	-2.4
4,621,253	+		DZA65_RS21360	0.11	+0.3
4,621,253	+		DZA65_RS21360	0.11	+0.5
4,621,253	+		DZA65_RS21360	0.11	-0.2
4,621,254	-		DZA65_RS21360	0.11	-1.1
4,621,254	-		DZA65_RS21360	0.11	+1.7
4,621,295	-		DZA65_RS21360	0.15	+0.6
4,621,370	+		DZA65_RS21360	0.21	+1.3
4,621,388	+		DZA65_RS21360	0.22	-2.4
4,621,389	-		DZA65_RS21360	0.22	-0.0
4,621,389	-		DZA65_RS21360	0.22	+0.8
4,621,459	+		DZA65_RS21360	0.28	-1.1
4,621,558	+		DZA65_RS21360	0.36	-0.9
4,621,558	+		DZA65_RS21360	0.36	+2.4
4,621,558	+		DZA65_RS21360	0.36	-1.0
4,621,559	-		DZA65_RS21360	0.36	-1.5
4,621,564	-		DZA65_RS21360	0.37	-1.5
4,621,564	-		DZA65_RS21360	0.37	-1.5
4,621,564	-		DZA65_RS21360	0.37	-1.2
4,621,567	+		DZA65_RS21360	0.37	+0.3
4,621,567	+		DZA65_RS21360	0.37	+0.1
4,621,567	+		DZA65_RS21360	0.37	-1.9
4,621,567	+		DZA65_RS21360	0.37	-0.4
4,621,567	+		DZA65_RS21360	0.37	-1.7
4,621,567	+		DZA65_RS21360	0.37	+1.2
4,621,568	-		DZA65_RS21360	0.37	-0.9
4,621,568	-		DZA65_RS21360	0.37	-0.1
4,621,568	-		DZA65_RS21360	0.37	+1.6
4,621,568	-		DZA65_RS21360	0.37	+2.1
4,621,578	-		DZA65_RS21360	0.38	-0.5
4,621,578	-		DZA65_RS21360	0.38	+0.2
4,621,579	+		DZA65_RS21360	0.38	+0.2
4,621,579	+		DZA65_RS21360	0.38	+0.8
4,621,579	+		DZA65_RS21360	0.38	-0.9
4,621,579	+		DZA65_RS21360	0.38	-0.1
4,621,580	-		DZA65_RS21360	0.38	-0.3
4,621,580	-		DZA65_RS21360	0.38	-0.6
4,621,580	-		DZA65_RS21360	0.38	+0.8
4,621,643	-		DZA65_RS21360	0.43	-1.2
4,621,643	-		DZA65_RS21360	0.43	+0.8
4,621,677	-		DZA65_RS21360	0.46	+0.4
4,621,677	-		DZA65_RS21360	0.46	+0.3
4,621,677	-		DZA65_RS21360	0.46	-1.3
4,621,686	+		DZA65_RS21360	0.47	-1.4
4,621,686	+		DZA65_RS21360	0.47	+0.3
4,621,687	-		DZA65_RS21360	0.47	-0.5
4,621,687	-		DZA65_RS21360	0.47	-1.2
4,621,687	-		DZA65_RS21360	0.47	+0.3
4,621,687	-		DZA65_RS21360	0.47	+0.6
4,621,725	-		DZA65_RS21360	0.50	-0.1
4,621,746	-		DZA65_RS21360	0.52	+1.1
4,621,746	-		DZA65_RS21360	0.52	-1.7
4,621,788	+		DZA65_RS21360	0.55	+0.0
4,621,792	+		DZA65_RS21360	0.56	+1.1
4,621,792	+		DZA65_RS21360	0.56	-0.5
4,621,793	-		DZA65_RS21360	0.56	+0.9
4,621,793	-		DZA65_RS21360	0.56	-0.8
4,621,793	-		DZA65_RS21360	0.56	+0.5
4,621,810	+		DZA65_RS21360	0.57	+0.3
4,621,811	-		DZA65_RS21360	0.57	+0.1
4,621,811	-		DZA65_RS21360	0.57	+0.6
4,621,828	+		DZA65_RS21360	0.59	-1.1
4,621,828	+		DZA65_RS21360	0.59	+0.9
4,621,828	+		DZA65_RS21360	0.59	-0.3
4,621,829	-		DZA65_RS21360	0.59	+0.8
4,621,829	-		DZA65_RS21360	0.59	+0.6
4,621,869	+		DZA65_RS21360	0.62	+0.3
4,621,890	+		DZA65_RS21360	0.64	+0.8
4,621,891	-		DZA65_RS21360	0.64	+1.1
4,621,952	-		DZA65_RS21360	0.69	+0.4
4,621,952	-		DZA65_RS21360	0.69	-0.1
4,621,952	-		DZA65_RS21360	0.69	-0.6