Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21205

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,578,829	+		DZA65_RS21180	0.67	+0.4
4,578,829	+		DZA65_RS21180	0.67	-0.9
4,578,835	+		DZA65_RS21180	0.68	+1.4
4,578,851	+		DZA65_RS21180	0.70	-1.9
4,578,852	-		DZA65_RS21180	0.70	+0.1
4,578,852	-		DZA65_RS21180	0.70	+0.5
4,578,852	-		DZA65_RS21180	0.70	-0.8
4,578,852	-		DZA65_RS21180	0.70	-0.3
4,578,886	+		DZA65_RS21180	0.74	+0.1
4,578,887	-		DZA65_RS21180	0.74	+2.1
4,578,906	+		DZA65_RS21180	0.76	-0.3
4,578,907	-		DZA65_RS21180	0.77	-0.0
4,578,973	+				-0.5
4,578,973	+		DZA65_RS21180	0.85	+1.1
4,578,973	+		DZA65_RS21180	0.85	+0.5
4,578,981	+		DZA65_RS21180	0.86	+0.1
4,579,005	+		DZA65_RS21180	0.89	-1.3
4,579,005	+		DZA65_RS21180	0.89	+2.5
4,579,005	+		DZA65_RS21180	0.89	-1.7
4,579,005	+		DZA65_RS21180	0.89	-0.5
4,579,005	+		DZA65_RS21180	0.89	+1.7
4,579,006	-		DZA65_RS21180	0.89	+1.0
4,579,006	-		DZA65_RS21180	0.89	-2.7
4,579,032	+				+0.5
4,579,032	+				+0.8
4,579,033	-				+0.7
4,579,033	-				-1.1
4,579,052	+				-0.5
4,579,052	+				+0.1
4,579,052	+				+1.1
4,579,053	-				+0.6
4,579,053	-				-1.7
4,579,094	+				-1.1
4,579,094	+				-0.0
4,579,095	-				-0.8
4,579,095	-				-0.5
4,579,095	-				-0.4
4,579,095	-				+1.1
4,579,095	-				-0.2
4,579,137	+				-0.5
4,579,137	+				+0.7
4,579,137	+				-0.9
4,579,138	-				+1.3
4,579,138	-				-0.7
4,579,138	-				+1.4
4,579,138	-				+0.4
4,579,138	-				-0.1
4,579,138	-				+1.3
4,579,138	-				+0.2
4,579,138	-				+1.8
4,579,138	-				-0.3
4,579,149	-				+1.2
4,579,170	-				-2.1
4,579,170	-				+0.3
4,579,188	+				+0.7
4,579,189	-				-0.2
4,579,189	-				-0.4
4,579,296	-				+0.2
4,579,296	-				+0.5
4,579,735	+				-1.1
4,579,736	-				-0.5
4,579,736	-				+1.2
4,579,736	-				-0.9
4,579,769	+				+0.6
4,579,770	-				+1.1
4,579,770	-				+0.1
4,579,801	+				+0.6
4,579,802	-				-1.5
4,579,802	-				-0.1
4,579,835	+				-1.5
4,579,855	+				+0.6
4,579,856	-				-2.8
4,579,856	-				+1.1
4,579,856	-				-1.3
4,579,924	+				+1.6
4,579,924	+				+1.0
4,579,924	+				-0.6
4,579,924	+				-2.0
4,579,924	+				-0.9
4,579,924	+				+1.1
4,579,924	+				-0.3
4,579,924	+				+1.7
4,579,924	+				+1.3
4,579,924	+				+0.5
4,579,924	+				-1.4
4,579,924	+				-0.2
4,579,924	+				-1.0
4,579,925	-				-0.5
4,579,925	-				+0.1
4,579,925	-				+0.7
4,579,925	-				-1.2
4,579,925	-				+0.1
4,579,925	-				+1.1
4,579,925	-				-0.3
4,579,925	-				+1.9
4,579,925	-				+0.7
4,579,925	-				-0.4
4,579,925	-				+0.4
4,579,925	-				-1.4
4,579,925	-				+0.6
4,579,925	-				-0.5
4,579,925	-				-0.4
4,579,925	-				-1.1
4,579,925	-				-1.3
4,579,925	-				+2.1
4,579,966	+		DZA65_RS21205	0.12	+0.1
4,579,966	+		DZA65_RS21205	0.12	-0.5
4,579,966	+		DZA65_RS21205	0.12	+1.1
4,579,967	-		DZA65_RS21205	0.12	-0.3
4,579,967	-		DZA65_RS21205	0.12	+1.7
4,579,967	-		DZA65_RS21205	0.12	+0.3
4,579,967	-		DZA65_RS21205	0.12	-0.9
4,579,988	+		DZA65_RS21205	0.13	+0.5
4,579,989	-		DZA65_RS21205	0.14	+3.0
4,579,989	-		DZA65_RS21205	0.14	-0.1
4,579,989	-		DZA65_RS21205	0.14	-1.8
4,580,050	-		DZA65_RS21205	0.18	-1.5
4,580,050	-		DZA65_RS21205	0.18	-1.5
4,580,050	-		DZA65_RS21205	0.18	+0.7
4,580,050	-		DZA65_RS21205	0.18	-2.4
4,580,098	+		DZA65_RS21205	0.21	-0.5
4,580,098	+		DZA65_RS21205	0.21	-0.9
4,580,099	-		DZA65_RS21205	0.21	+0.7
4,580,099	-		DZA65_RS21205	0.21	-0.3
4,580,099	-		DZA65_RS21205	0.21	-0.5
4,580,099	-		DZA65_RS21205	0.21	-0.6
4,580,104	+		DZA65_RS21205	0.22	+0.6
4,580,104	+		DZA65_RS21205	0.22	+0.1
4,580,104	+		DZA65_RS21205	0.22	-1.7
4,580,105	-		DZA65_RS21205	0.22	-2.3
4,580,105	-		DZA65_RS21205	0.22	+0.7
4,580,105	-		DZA65_RS21205	0.22	+0.1
4,580,105	-		DZA65_RS21205	0.22	-1.5
4,580,105	-		DZA65_RS21205	0.22	-0.3
4,580,105	-		DZA65_RS21205	0.22	-0.9
4,580,137	+		DZA65_RS21205	0.24	-1.7
4,580,137	+		DZA65_RS21205	0.24	+0.1
4,580,138	-		DZA65_RS21205	0.24	+0.1
4,580,138	-		DZA65_RS21205	0.24	+0.1
4,580,258	-		DZA65_RS21205	0.33	+1.1
4,580,258	-		DZA65_RS21205	0.33	-2.8
4,580,258	-		DZA65_RS21205	0.33	+0.0
4,580,258	-		DZA65_RS21205	0.33	-1.9
4,580,278	+		DZA65_RS21205	0.34	+0.5
4,580,278	+		DZA65_RS21205	0.34	+1.1
4,580,278	+		DZA65_RS21205	0.34	-0.5
4,580,278	+		DZA65_RS21205	0.34	-2.5
4,580,278	+		DZA65_RS21205	0.34	-0.5
4,580,278	+		DZA65_RS21205	0.34	+0.3
4,580,278	+				+2.1
4,580,278	+		DZA65_RS21205	0.34	+1.8
4,580,278	+		DZA65_RS21205	0.34	-2.3
4,580,278	+		DZA65_RS21205	0.34	-1.5
4,580,278	+		DZA65_RS21205	0.34	+0.5
4,580,278	+		DZA65_RS21205	0.34	-0.5
4,580,278	+		DZA65_RS21205	0.34	-0.9
4,580,278	+		DZA65_RS21205	0.34	-0.6
4,580,278	+		DZA65_RS21205	0.34	+1.1
4,580,278	+		DZA65_RS21205	0.34	-1.5
4,580,278	+		DZA65_RS21205	0.34	+1.7
4,580,279	-		DZA65_RS21205	0.34	-0.3
4,580,279	-		DZA65_RS21205	0.34	-0.8
4,580,279	-		DZA65_RS21205	0.34	+0.1
4,580,279	-		DZA65_RS21205	0.34	+0.1
4,580,279	-		DZA65_RS21205	0.34	-0.3
4,580,279	-		DZA65_RS21205	0.34	-0.3
4,580,279	-		DZA65_RS21205	0.34	+1.9
4,580,279	-		DZA65_RS21205	0.34	+1.3
4,580,279	-		DZA65_RS21205	0.34	+0.6
4,580,279	-		DZA65_RS21205	0.34	+0.4
4,580,279	-		DZA65_RS21205	0.34	-1.2
4,580,279	-		DZA65_RS21205	0.34	-1.8
4,580,291	+		DZA65_RS21205	0.35	-0.7
4,580,291	+		DZA65_RS21205	0.35	-0.6
4,580,291	+		DZA65_RS21205	0.35	+0.2
4,580,291	+		DZA65_RS21205	0.35	-2.1
4,580,292	-		DZA65_RS21205	0.35	-0.2
4,580,292	-		DZA65_RS21205	0.35	-0.1
4,580,446	+		DZA65_RS21205	0.46	-0.3
4,580,447	-		DZA65_RS21205	0.46	-1.1
4,580,447	-		DZA65_RS21205	0.46	+0.3
4,580,459	+		DZA65_RS21205	0.47	+0.8
4,580,471	+		DZA65_RS21205	0.48	+0.0
4,580,471	+		DZA65_RS21205	0.48	-0.8
4,580,471	+		DZA65_RS21205	0.48	-0.7
4,580,472	-		DZA65_RS21205	0.48	-1.5
4,580,472	-		DZA65_RS21205	0.48	+0.1
4,580,472	-		DZA65_RS21205	0.48	+0.1
4,580,551	+		DZA65_RS21205	0.54	+2.1
4,580,552	-		DZA65_RS21205	0.54	-0.5
4,580,552	-		DZA65_RS21205	0.54	+0.1
4,580,552	-		DZA65_RS21205	0.54	+1.1
4,580,552	-		DZA65_RS21205	0.54	+0.7
4,580,552	-		DZA65_RS21205	0.54	+1.9
4,580,715	+		DZA65_RS21205	0.66	-0.9
4,580,715	+		DZA65_RS21205	0.66	+1.1
4,580,752	+		DZA65_RS21205	0.68	-1.2
4,580,752	+		DZA65_RS21205	0.68	+0.8
4,580,752	+		DZA65_RS21205	0.68	+0.2
4,580,752	+		DZA65_RS21205	0.68	-0.8
4,580,752	+		DZA65_RS21205	0.68	+0.0
4,580,752	+		DZA65_RS21205	0.68	+1.1
4,580,753	-		DZA65_RS21205	0.68	-0.5
4,580,839	+		DZA65_RS21205	0.74	-0.2
4,580,848	+		DZA65_RS21205	0.75	+1.2
4,580,848	+		DZA65_RS21205	0.75	-0.3
4,580,848	+		DZA65_RS21205	0.75	+0.1
4,580,848	+		DZA65_RS21205	0.75	-0.7
4,580,848	+		DZA65_RS21205	0.75	+1.2
4,580,848	+		DZA65_RS21205	0.75	-1.5
4,580,848	+		DZA65_RS21205	0.75	-2.1
4,580,848	+		DZA65_RS21205	0.75	+0.6
4,580,849	-		DZA65_RS21205	0.75	+1.8
4,580,849	-		DZA65_RS21205	0.75	-0.7
4,580,849	-		DZA65_RS21205	0.75	-0.4
4,580,849	-		DZA65_RS21205	0.75	-0.5
4,580,849	-		DZA65_RS21205	0.75	+0.3
4,580,849	-		DZA65_RS21205	0.75	+0.5
4,580,849	-		DZA65_RS21205	0.75	+0.2
4,580,849	-		DZA65_RS21205	0.75	-0.7
4,580,849	-		DZA65_RS21205	0.75	-2.1
4,580,849	-		DZA65_RS21205	0.75	+0.3
4,580,849	-		DZA65_RS21205	0.75	-0.9
4,580,849	-		DZA65_RS21205	0.75	-1.5
4,580,849	-		DZA65_RS21205	0.75	-2.3
4,580,864	+		DZA65_RS21205	0.76	+0.6
4,580,894	+		DZA65_RS21205	0.78	-2.4
4,580,894	+		DZA65_RS21205	0.78	-2.2
4,580,894	+		DZA65_RS21205	0.78	-0.2
4,580,894	+		DZA65_RS21205	0.78	-0.1
4,580,894	+		DZA65_RS21205	0.78	+0.3
4,580,894	+		DZA65_RS21205	0.78	+0.3
4,580,894	+		DZA65_RS21205	0.78	-1.1
4,580,895	-		DZA65_RS21205	0.78	+1.5
4,580,895	-		DZA65_RS21205	0.78	-0.9
4,580,895	-		DZA65_RS21205	0.78	-1.3
4,580,895	-		DZA65_RS21205	0.78	-1.5
4,580,895	-		DZA65_RS21205	0.78	-0.9
4,580,895	-		DZA65_RS21205	0.78	-0.1
4,580,895	-				+0.1
4,580,902	+		DZA65_RS21205	0.79	+0.8
4,580,941	+		DZA65_RS21205	0.82	-1.3
4,580,941	+		DZA65_RS21205	0.82	+0.8
4,580,942	-		DZA65_RS21205	0.82	-0.4
4,580,942	-		DZA65_RS21205	0.82	-1.5
4,580,953	+		DZA65_RS21205	0.83	-1.4
4,581,041	+		DZA65_RS21205	0.89	+1.1
4,581,041	+		DZA65_RS21205	0.89	-1.3
4,581,041	+		DZA65_RS21205	0.89	+0.3
4,581,041	+		DZA65_RS21205	0.89	-0.9
4,581,041	+		DZA65_RS21205	0.89	-0.1
4,581,041	+		DZA65_RS21205	0.89	-2.6
4,581,041	+		DZA65_RS21205	0.89	+0.1
4,581,042	-		DZA65_RS21205	0.89	-0.8
4,581,042	-		DZA65_RS21205	0.89	+1.1
4,581,042	-		DZA65_RS21205	0.89	-1.5
4,581,043	+		DZA65_RS21205	0.89	+0.9
4,581,043	+		DZA65_RS21205	0.89	-1.3
4,581,043	+		DZA65_RS21205	0.89	+0.8
4,581,043	+		DZA65_RS21205	0.89	+0.1
4,581,043	+		DZA65_RS21205	0.89	+0.4
4,581,043	+		DZA65_RS21205	0.89	+0.3
4,581,044	-		DZA65_RS21205	0.89	-1.8
4,581,044	-		DZA65_RS21205	0.89	+1.1
4,581,044	-		DZA65_RS21205	0.89	+0.5
4,581,044	-		DZA65_RS21205	0.89	+0.3
4,581,044	-		DZA65_RS21205	0.89	+3.2
4,581,044	-		DZA65_RS21205	0.89	+0.9
4,581,044	-		DZA65_RS21205	0.89	-0.5
4,581,133	-				+0.3
4,581,185	+				+1.4
4,581,185	+				-1.3
4,581,186	-				+0.1
4,581,186	-				+0.6
4,581,186	-				+0.5
4,581,186	-				-0.0
4,581,186	-				+0.5
4,581,186	-				+0.4
4,581,186	-				+0.0
4,581,194	+				-0.4
4,581,194	+				+0.7
4,581,195	-				+0.7
4,581,195	-				+0.1
4,581,195	-				-0.7
4,581,195	-				+0.1
4,581,195	-				-1.0
4,581,196	+				+0.9
4,581,196	+				+2.9
4,581,196	+				+0.4
4,581,196	+				-0.8
4,581,196	+				-0.9
4,581,196	+				+0.7
4,581,196	+				-0.8
4,581,196	+				-1.3
4,581,196	+				-0.3
4,581,197	-				-0.9
4,581,197	-				-0.3
4,581,197	-				-0.0
4,581,197	-				+0.2
4,581,197	-				+0.3
4,581,197	-				-0.6
4,581,197	-				+0.6
4,581,243	+				-0.9
4,581,251	+				+0.8
4,581,251	+				+1.9
4,581,251	+				+1.4
4,581,252	-				-0.8
4,581,252	-				+3.4
4,581,252	-				+1.5
4,581,253	+				+0.4
4,581,254	-				-0.9
4,581,275	+				-0.5
4,581,275	+				+0.2
4,581,276	-				-0.3
4,581,276	-				-0.2
4,581,278	-				-1.1
4,581,360	-				+0.2
4,581,360	-				+0.1
4,581,360	-				-1.9
4,581,360	-				-1.5
4,581,371	-				-0.5
4,581,371	-				+0.1
4,581,388	+				-0.5
4,581,389	-				-0.3
4,581,389	-				+0.1
4,581,421	-				-1.1
4,581,485	+				+0.1
4,581,486	-				+0.3
4,581,486	-				-0.4
4,581,569	+				-0.5
4,581,569	+		DZA65_RS21210	0.11	+0.2
4,581,569	+		DZA65_RS21210	0.11	+4.1
4,581,638	+		DZA65_RS21210	0.20	-0.4
4,581,638	+		DZA65_RS21210	0.20	+0.7
4,581,638	+		DZA65_RS21210	0.20	+0.1
4,581,639	-		DZA65_RS21210	0.21	-2.1
4,581,639	-		DZA65_RS21210	0.21	+0.5
4,581,639	-		DZA65_RS21210	0.21	+0.3
4,581,639	-		DZA65_RS21210	0.21	+1.3
4,581,639	-		DZA65_RS21210	0.21	+0.1
4,581,659	+		DZA65_RS21210	0.23	+1.2
4,581,659	+		DZA65_RS21210	0.23	-1.7
4,581,659	+		DZA65_RS21210	0.23	+0.7
4,581,659	+		DZA65_RS21210	0.23	+1.9
4,581,659	+		DZA65_RS21210	0.23	+0.3
4,581,659	+		DZA65_RS21210	0.23	+0.3
4,581,659	+		DZA65_RS21210	0.23	-0.5
4,581,659	+		DZA65_RS21210	0.23	-1.7
4,581,660	-		DZA65_RS21210	0.23	-0.9
4,581,660	-		DZA65_RS21210	0.23	-1.9
4,581,660	-		DZA65_RS21210	0.23	-1.9
4,581,660	-		DZA65_RS21210	0.23	-0.9
4,581,660	-		DZA65_RS21210	0.23	-2.4
4,581,660	-		DZA65_RS21210	0.23	-0.7
4,581,660	-		DZA65_RS21210	0.23	-1.7
4,581,797	+		DZA65_RS21210	0.42	+1.4
4,581,797	+		DZA65_RS21210	0.42	+1.1
4,581,797	+		DZA65_RS21210	0.42	-0.2
4,581,798	-		DZA65_RS21210	0.42	+2.2
4,581,798	-		DZA65_RS21210	0.42	+0.1
4,581,955	-		DZA65_RS21210	0.63	+0.8
4,581,977	+		DZA65_RS21210	0.65	+0.6
4,581,990	+		DZA65_RS21210	0.67	+0.6
4,581,990	+		DZA65_RS21210	0.67	-1.7
4,581,990	+		DZA65_RS21210	0.67	-0.4
4,581,990	+		DZA65_RS21210	0.67	+0.1
4,581,990	+		DZA65_RS21210	0.67	-1.3
4,581,991	-		DZA65_RS21210	0.67	-0.4
4,581,991	-		DZA65_RS21210	0.67	+0.3
4,581,991	-		DZA65_RS21210	0.67	+0.1
4,582,009	-		DZA65_RS21210	0.70	-0.2
4,582,019	+		DZA65_RS21210	0.71	+1.5
4,582,019	+		DZA65_RS21210	0.71	-1.5
4,582,019	+		DZA65_RS21210	0.71	-0.2
4,582,019	+		DZA65_RS21210	0.71	+1.1
4,582,019	+		DZA65_RS21210	0.71	+2.3
4,582,019	+		DZA65_RS21210	0.71	+0.4
4,582,019	+				-0.5
4,582,019	+		DZA65_RS21210	0.71	-0.2
4,582,020	-		DZA65_RS21210	0.71	+0.3
4,582,020	-		DZA65_RS21210	0.71	+0.7
4,582,020	-		DZA65_RS21210	0.71	-0.2
4,582,020	-		DZA65_RS21210	0.71	+0.6
4,582,020	-		DZA65_RS21210	0.71	-0.0
4,582,020	-		DZA65_RS21210	0.71	+0.5
4,582,020	-		DZA65_RS21210	0.71	+0.3
4,582,020	-		DZA65_RS21210	0.71	+1.1