Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20065

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS20060 and DZA65_RS20065 are separated by 11 nucleotidesDZA65_RS20065 and DZA65_RS20070 overlap by 4 nucleotides DZA65_RS20060: DZA65_RS20060 - HlyD family efflux transporter periplasmic adaptor subunit, at 4,347,514 to 4,349,622 _RS20060 DZA65_RS20065: DZA65_RS20065 - HlyD family efflux transporter periplasmic adaptor subunit, at 4,349,634 to 4,350,953 _RS20065 DZA65_RS20070: DZA65_RS20070 - efflux RND transporter periplasmic adaptor subunit, at 4,350,950 to 4,351,753 _RS20070 Position (kb) 4349 4350 4351Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4348.670 kb on + strand, within DZA65_RS20060at 4348.671 kb on - strand, within DZA65_RS20060at 4348.721 kb on + strand, within DZA65_RS20060at 4348.721 kb on + strand, within DZA65_RS20060at 4348.888 kb on + strand, within DZA65_RS20060at 4348.888 kb on + strand, within DZA65_RS20060at 4348.889 kb on - strand, within DZA65_RS20060at 4348.942 kb on - strand, within DZA65_RS20060at 4348.943 kb on + strand, within DZA65_RS20060at 4348.943 kb on + strand, within DZA65_RS20060at 4348.943 kb on + strand, within DZA65_RS20060at 4348.943 kb on + strand, within DZA65_RS20060at 4348.944 kb on - strand, within DZA65_RS20060at 4348.944 kb on - strand, within DZA65_RS20060at 4348.944 kb on - strand, within DZA65_RS20060at 4348.944 kb on - strand, within DZA65_RS20060at 4348.965 kb on + strand, within DZA65_RS20060at 4348.965 kb on + strand, within DZA65_RS20060at 4348.965 kb on + strand, within DZA65_RS20060at 4349.008 kb on - strand, within DZA65_RS20060at 4349.013 kb on + strand, within DZA65_RS20060at 4349.112 kb on + strand, within DZA65_RS20060at 4349.113 kb on - strand, within DZA65_RS20060at 4349.113 kb on - strand, within DZA65_RS20060at 4349.113 kb on - strand, within DZA65_RS20060at 4349.113 kb on - strand, within DZA65_RS20060at 4349.113 kb on - strand, within DZA65_RS20060at 4349.113 kb on - strand, within DZA65_RS20060at 4349.115 kb on - strand, within DZA65_RS20060at 4349.115 kb on - strand, within DZA65_RS20060at 4349.161 kb on + strand, within DZA65_RS20060at 4349.173 kb on + strand, within DZA65_RS20060at 4349.173 kb on + strand, within DZA65_RS20060at 4349.173 kb on + strand, within DZA65_RS20060at 4349.173 kb on + strand, within DZA65_RS20060at 4349.173 kb on + strand, within DZA65_RS20060at 4349.174 kb on - strand, within DZA65_RS20060at 4349.174 kb on - strand, within DZA65_RS20060at 4349.174 kb on - strand, within DZA65_RS20060at 4349.174 kb on - strand, within DZA65_RS20060at 4349.174 kb on - strand, within DZA65_RS20060at 4349.174 kb on - strand, within DZA65_RS20060at 4349.195 kb on + strand, within DZA65_RS20060at 4349.195 kb on + strand, within DZA65_RS20060at 4349.196 kb on - strand, within DZA65_RS20060at 4349.267 kb on + strand, within DZA65_RS20060at 4349.267 kb on + strandat 4349.267 kb on + strand, within DZA65_RS20060at 4349.267 kb on + strand, within DZA65_RS20060at 4349.324 kb on + strand, within DZA65_RS20060at 4349.324 kb on + strand, within DZA65_RS20060at 4349.338 kb on + strand, within DZA65_RS20060at 4349.339 kb on - strandat 4349.339 kb on - strand, within DZA65_RS20060at 4349.605 kb on - strandat 4349.605 kb on - strandat 4349.637 kb on + strandat 4349.637 kb on + strandat 4349.637 kb on + strandat 4349.638 kb on - strandat 4349.683 kb on + strandat 4349.683 kb on + strandat 4349.684 kb on - strandat 4349.684 kb on - strandat 4349.684 kb on - strandat 4349.684 kb on - strandat 4349.776 kb on + strand, within DZA65_RS20065at 4349.813 kb on - strand, within DZA65_RS20065at 4349.873 kb on + strand, within DZA65_RS20065at 4349.873 kb on + strand, within DZA65_RS20065at 4349.874 kb on - strand, within DZA65_RS20065at 4349.874 kb on - strand, within DZA65_RS20065at 4349.876 kb on + strand, within DZA65_RS20065at 4349.877 kb on - strand, within DZA65_RS20065at 4349.877 kb on - strand, within DZA65_RS20065at 4349.877 kb on - strand, within DZA65_RS20065at 4350.073 kb on + strand, within DZA65_RS20065at 4350.225 kb on + strand, within DZA65_RS20065at 4350.226 kb on - strand, within DZA65_RS20065at 4350.419 kb on + strand, within DZA65_RS20065at 4350.420 kb on - strand, within DZA65_RS20065at 4350.553 kb on + strand, within DZA65_RS20065at 4350.553 kb on + strand, within DZA65_RS20065at 4350.553 kb on + strand, within DZA65_RS20065at 4350.554 kb on - strand, within DZA65_RS20065at 4350.584 kb on + strand, within DZA65_RS20065at 4350.584 kb on + strand, within DZA65_RS20065at 4350.585 kb on - strand, within DZA65_RS20065at 4350.670 kb on - strand, within DZA65_RS20065at 4350.670 kb on - strandat 4350.853 kb on + strandat 4350.854 kb on - strandat 4350.854 kb on - strandat 4350.920 kb on + strandat 4350.920 kb on + strandat 4350.920 kb on + strandat 4350.921 kb on - strandat 4350.921 kb on - strandat 4350.921 kb on - strandat 4350.921 kb on - strandat 4350.921 kb on - strandat 4350.921 kb on - strandat 4350.921 kb on - strandat 4351.115 kb on - strand, within DZA65_RS20070at 4351.175 kb on - strand, within DZA65_RS20070at 4351.236 kb on + strand, within DZA65_RS20070at 4351.236 kb on + strand, within DZA65_RS20070at 4351.236 kb on + strand, within DZA65_RS20070at 4351.236 kb on + strand, within DZA65_RS20070at 4351.236 kb on + strand, within DZA65_RS20070at 4351.237 kb on - strand, within DZA65_RS20070at 4351.237 kb on - strand, within DZA65_RS20070at 4351.237 kb on - strand, within DZA65_RS20070at 4351.237 kb on - strand, within DZA65_RS20070at 4351.285 kb on + strand, within DZA65_RS20070at 4351.286 kb on - strand, within DZA65_RS20070at 4351.311 kb on + strand, within DZA65_RS20070at 4351.312 kb on - strandat 4351.312 kb on - strand, within DZA65_RS20070at 4351.312 kb on - strand, within DZA65_RS20070at 4351.312 kb on - strand, within DZA65_RS20070at 4351.467 kb on + strand, within DZA65_RS20070at 4351.467 kb on + strand, within DZA65_RS20070at 4351.467 kb on + strand, within DZA65_RS20070at 4351.467 kb on + strand, within DZA65_RS20070at 4351.468 kb on - strand, within DZA65_RS20070at 4351.468 kb on - strand, within DZA65_RS20070at 4351.468 kb on - strand, within DZA65_RS20070at 4351.468 kb on - strand, within DZA65_RS20070at 4351.468 kb on - strand, within DZA65_RS20070at 4351.472 kb on - strand, within DZA65_RS20070at 4351.539 kb on - strand, within DZA65_RS20070at 4351.539 kb on - strand, within DZA65_RS20070at 4351.648 kb on + strand, within DZA65_RS20070at 4351.649 kb on - strand, within DZA65_RS20070at 4351.655 kb on + strand, within DZA65_RS20070at 4351.687 kb on - strandat 4351.687 kb on - strandat 4351.687 kb on - strandat 4351.756 kb on + strandat 4351.757 kb on - strandat 4351.841 kb on + strandat 4351.841 kb on + strandat 4351.842 kb on - strandat 4351.842 kb on - strandat 4351.842 kb on - strandat 4351.842 kb on - strandat 4351.853 kb on + strandat 4351.853 kb on + strandat 4351.853 kb on + strandat 4351.853 kb on + strandat 4351.853 kb on + strandat 4351.853 kb on + strandat 4351.853 kb on + strandat 4351.854 kb on - strandat 4351.856 kb on - strandat 4351.856 kb on - strandat 4351.885 kb on + strandat 4351.885 kb on + strandat 4351.885 kb on + strandat 4351.885 kb on + strandat 4351.885 kb on + strandat 4351.885 kb on + strandat 4351.885 kb on + strandat 4351.886 kb on - strandat 4351.886 kb on - strandat 4351.886 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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4,348,670 + DZA65_RS20060 0.55 -0.6
4,348,671 - DZA65_RS20060 0.55 -0.1
4,348,721 + DZA65_RS20060 0.57 -2.3
4,348,721 + DZA65_RS20060 0.57 -0.7
4,348,888 + DZA65_RS20060 0.65 +0.3
4,348,888 + DZA65_RS20060 0.65 +1.0
4,348,889 - DZA65_RS20060 0.65 -0.6
4,348,942 - DZA65_RS20060 0.68 +1.2
4,348,943 + DZA65_RS20060 0.68 +1.0
4,348,943 + DZA65_RS20060 0.68 +1.1
4,348,943 + DZA65_RS20060 0.68 -0.9
4,348,943 + DZA65_RS20060 0.68 +0.1
4,348,944 - DZA65_RS20060 0.68 -0.2
4,348,944 - DZA65_RS20060 0.68 +3.2
4,348,944 - DZA65_RS20060 0.68 -2.0
4,348,944 - DZA65_RS20060 0.68 +0.5
4,348,965 + DZA65_RS20060 0.69 +1.0
4,348,965 + DZA65_RS20060 0.69 -2.2
4,348,965 + DZA65_RS20060 0.69 +0.4
4,349,008 - DZA65_RS20060 0.71 +2.0
4,349,013 + DZA65_RS20060 0.71 -0.1
4,349,112 + DZA65_RS20060 0.76 +0.3
4,349,113 - DZA65_RS20060 0.76 +0.2
4,349,113 - DZA65_RS20060 0.76 -0.3
4,349,113 - DZA65_RS20060 0.76 +2.4
4,349,113 - DZA65_RS20060 0.76 +0.2
4,349,113 - DZA65_RS20060 0.76 +1.3
4,349,113 - DZA65_RS20060 0.76 -1.0
4,349,115 - DZA65_RS20060 0.76 +1.4
4,349,115 - DZA65_RS20060 0.76 -0.1
4,349,161 + DZA65_RS20060 0.78 +1.0
4,349,173 + DZA65_RS20060 0.79 -0.3
4,349,173 + DZA65_RS20060 0.79 +0.3
4,349,173 + DZA65_RS20060 0.79 -0.6
4,349,173 + DZA65_RS20060 0.79 +1.1
4,349,173 + DZA65_RS20060 0.79 -0.2
4,349,174 - DZA65_RS20060 0.79 -0.0
4,349,174 - DZA65_RS20060 0.79 +1.2
4,349,174 - DZA65_RS20060 0.79 +0.4
4,349,174 - DZA65_RS20060 0.79 +1.0
4,349,174 - DZA65_RS20060 0.79 -0.3
4,349,174 - DZA65_RS20060 0.79 -0.0
4,349,195 + DZA65_RS20060 0.80 -0.6
4,349,195 + DZA65_RS20060 0.80 +0.7
4,349,196 - DZA65_RS20060 0.80 -0.3
4,349,267 + DZA65_RS20060 0.83 +0.1
4,349,267 + -0.6
4,349,267 + DZA65_RS20060 0.83 +0.1
4,349,267 + DZA65_RS20060 0.83 -0.4
4,349,324 + DZA65_RS20060 0.86 -0.5
4,349,324 + DZA65_RS20060 0.86 -2.0
4,349,338 + DZA65_RS20060 0.86 +0.2
4,349,339 - +0.4
4,349,339 - DZA65_RS20060 0.87 +0.3
4,349,605 - -0.5
4,349,605 - -0.0
4,349,637 + +0.6
4,349,637 + -1.0
4,349,637 + -0.2
4,349,638 - +0.8
4,349,683 + -1.0
4,349,683 + -1.6
4,349,684 - -1.7
4,349,684 - -0.0
4,349,684 - -0.6
4,349,684 - -0.3
4,349,776 + DZA65_RS20065 0.11 -0.9
4,349,813 - DZA65_RS20065 0.14 +1.0
4,349,873 + DZA65_RS20065 0.18 +0.4
4,349,873 + DZA65_RS20065 0.18 +0.2
4,349,874 - DZA65_RS20065 0.18 -1.0
4,349,874 - DZA65_RS20065 0.18 -0.8
4,349,876 + DZA65_RS20065 0.18 -0.5
4,349,877 - DZA65_RS20065 0.18 -1.7
4,349,877 - DZA65_RS20065 0.18 +0.1
4,349,877 - DZA65_RS20065 0.18 +0.3
4,350,073 + DZA65_RS20065 0.33 +1.0
4,350,225 + DZA65_RS20065 0.45 -0.0
4,350,226 - DZA65_RS20065 0.45 +0.1
4,350,419 + DZA65_RS20065 0.59 +0.4
4,350,420 - DZA65_RS20065 0.60 -1.6
4,350,553 + DZA65_RS20065 0.70 +0.3
4,350,553 + DZA65_RS20065 0.70 -0.4
4,350,553 + DZA65_RS20065 0.70 -1.2
4,350,554 - DZA65_RS20065 0.70 +1.0
4,350,584 + DZA65_RS20065 0.72 +0.8
4,350,584 + DZA65_RS20065 0.72 +0.7
4,350,585 - DZA65_RS20065 0.72 +0.6
4,350,670 - DZA65_RS20065 0.78 -0.4
4,350,670 - -0.0
4,350,853 + -1.3
4,350,854 - +0.4
4,350,854 - -1.7
4,350,920 + +1.0
4,350,920 + +1.5
4,350,920 + +0.8
4,350,921 - -1.3
4,350,921 - -0.2
4,350,921 - -2.1
4,350,921 - +0.3
4,350,921 - +0.2
4,350,921 - -0.6
4,350,921 - +0.1
4,351,115 - DZA65_RS20070 0.21 +0.5
4,351,175 - DZA65_RS20070 0.28 +0.4
4,351,236 + DZA65_RS20070 0.36 +0.5
4,351,236 + DZA65_RS20070 0.36 +0.6
4,351,236 + DZA65_RS20070 0.36 +0.4
4,351,236 + DZA65_RS20070 0.36 -0.2
4,351,236 + DZA65_RS20070 0.36 -0.8
4,351,237 - DZA65_RS20070 0.36 -0.6
4,351,237 - DZA65_RS20070 0.36 -2.1
4,351,237 - DZA65_RS20070 0.36 +0.6
4,351,237 - DZA65_RS20070 0.36 +0.3
4,351,285 + DZA65_RS20070 0.42 -0.0
4,351,286 - DZA65_RS20070 0.42 +0.1
4,351,311 + DZA65_RS20070 0.45 +0.4
4,351,312 - +0.4
4,351,312 - DZA65_RS20070 0.45 -1.6
4,351,312 - DZA65_RS20070 0.45 -0.2
4,351,312 - DZA65_RS20070 0.45 +0.2
4,351,467 + DZA65_RS20070 0.64 +0.1
4,351,467 + DZA65_RS20070 0.64 -0.4
4,351,467 + DZA65_RS20070 0.64 +0.1
4,351,467 + DZA65_RS20070 0.64 -0.0
4,351,468 - DZA65_RS20070 0.64 -1.6
4,351,468 - DZA65_RS20070 0.64 -0.6
4,351,468 - DZA65_RS20070 0.64 -1.0
4,351,468 - DZA65_RS20070 0.64 +1.0
4,351,468 - DZA65_RS20070 0.64 -0.8
4,351,472 - DZA65_RS20070 0.65 +1.1
4,351,539 - DZA65_RS20070 0.73 -0.7
4,351,539 - DZA65_RS20070 0.73 +1.3
4,351,648 + DZA65_RS20070 0.87 +1.0
4,351,649 - DZA65_RS20070 0.87 +1.8
4,351,655 + DZA65_RS20070 0.88 -0.9
4,351,687 - -1.0
4,351,687 - -0.3
4,351,687 - +1.0
4,351,756 + -0.3
4,351,757 - -0.9
4,351,841 + +0.2
4,351,841 + +0.3
4,351,842 - -2.2
4,351,842 - -1.5
4,351,842 - -0.0
4,351,842 - +1.1
4,351,853 + +0.3
4,351,853 + -0.8
4,351,853 + -0.5
4,351,853 + +1.0
4,351,853 + -0.7
4,351,853 + +2.0
4,351,853 + +0.7
4,351,854 - -1.3
4,351,856 - +0.1
4,351,856 - -0.1
4,351,885 + +0.3
4,351,885 + +0.4
4,351,885 + +0.8
4,351,885 + -1.4
4,351,885 + -1.2
4,351,885 + -1.0
4,351,885 + -2.2
4,351,886 - -0.9
4,351,886 - -1.5
4,351,886 - -0.5

Or see this region's nucleotide sequence