Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19690

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,261,630	-				+1.5
4,261,630	-				+0.4
4,261,630	-				-1.1
4,261,630	-				-1.3
4,261,642	-				-0.5
4,261,663	+				-0.9
4,261,664	-				+0.2
4,261,664	-				+1.1
4,261,664	-				+0.9
4,261,664	-				+1.2
4,261,664	-				+0.6
4,261,664	-				+0.2
4,261,664	-				+0.4
4,261,664	-				+1.2
4,261,671	-				+0.1
4,261,799	-		DZA65_RS19685	0.15	+1.6
4,262,272	+		DZA65_RS19685	0.65	-1.4
4,262,338	-				-1.4
4,262,338	-		DZA65_RS19685	0.72	-0.1
4,262,368	+		DZA65_RS19685	0.75	-1.1
4,262,632	-				-1.5
4,262,642	+				+0.9
4,262,642	+				-2.2
4,262,642	+				+0.9
4,262,642	+				-0.6
4,262,642	+				-0.6
4,262,642	+				-0.9
4,262,642	+				-1.1
4,262,642	+				-0.1
4,262,642	+				+0.9
4,262,642	+				-0.3
4,262,642	+				+0.2
4,262,642	+				-1.4
4,262,642	+				-0.5
4,262,642	+				+1.4
4,262,643	-				-1.2
4,262,643	-				-1.9
4,262,643	-				-0.6
4,262,643	-				+1.4
4,262,643	-				+0.2
4,262,643	-				-2.9
4,262,643	-				+0.1
4,262,643	-				-0.9
4,262,643	-				+0.4
4,262,643	-				-0.3
4,262,643	-				-0.9
4,262,643	-				-1.9
4,262,643	-				+0.6
4,262,643	-				+0.4
4,262,643	-				-0.1
4,262,643	-				+0.1
4,262,643	-				+0.5
4,262,643	-				+0.7
4,262,643	-				-0.1
4,262,643	-				+0.6
4,262,643	-				+0.6
4,262,643	-				-0.4
4,262,643	-				-1.4
4,262,643	-				-0.6
4,262,644	+				-2.2
4,262,644	+				-0.9
4,262,644	+				-0.6
4,262,644	+				-1.4
4,262,644	+				-0.5
4,262,644	+				-0.8
4,262,645	-				-0.2
4,262,645	-				-0.6
4,262,692	+				-0.6
4,262,692	+				+1.2
4,262,693	-				-1.1
4,262,693	-				+0.9
4,262,710	+				-2.5
4,262,710	+				-1.1
4,262,711	-				-0.6
4,262,810	+		DZA65_RS19690	0.11	-0.6
4,262,810	+		DZA65_RS19690	0.11	-0.5
4,262,816	-		DZA65_RS19690	0.11	-0.8
4,262,816	-		DZA65_RS19690	0.11	-2.4
4,262,816	-		DZA65_RS19690	0.11	-0.8
4,262,816	-		DZA65_RS19690	0.11	-0.8
4,262,816	-		DZA65_RS19690	0.11	+0.2
4,262,860	+		DZA65_RS19690	0.14	+2.1
4,262,861	-		DZA65_RS19690	0.14	-0.9
4,262,880	+		DZA65_RS19690	0.15	+0.0
4,262,881	-		DZA65_RS19690	0.15	-1.4
4,262,908	+		DZA65_RS19690	0.16	-0.6
4,262,909	-		DZA65_RS19690	0.16	+0.1
4,262,909	-		DZA65_RS19690	0.16	-0.1
4,262,909	-		DZA65_RS19690	0.16	+1.3
4,263,053	+		DZA65_RS19690	0.24	+0.2
4,263,098	+		DZA65_RS19690	0.26	-1.7
4,263,098	+		DZA65_RS19690	0.26	+1.5
4,263,113	+		DZA65_RS19690	0.27	-1.1
4,263,113	+		DZA65_RS19690	0.27	-0.2
4,263,113	+		DZA65_RS19690	0.27	-0.6
4,263,113	+		DZA65_RS19690	0.27	-0.9
4,263,114	-		DZA65_RS19690	0.27	+0.4
4,263,114	-		DZA65_RS19690	0.27	+0.4
4,263,114	-		DZA65_RS19690	0.27	-0.3
4,263,125	+		DZA65_RS19690	0.27	+0.2
4,263,125	+		DZA65_RS19690	0.27	-2.5
4,263,226	-		DZA65_RS19690	0.33	-0.5
4,263,226	-		DZA65_RS19690	0.33	-0.1
4,263,286	+		DZA65_RS19690	0.36	-0.8
4,263,286	+		DZA65_RS19690	0.36	+3.1
4,263,287	-		DZA65_RS19690	0.36	-2.1
4,263,287	-		DZA65_RS19690	0.36	-0.6
4,263,287	-		DZA65_RS19690	0.36	+2.8
4,263,336	+		DZA65_RS19690	0.38	+0.5
4,263,336	+		DZA65_RS19690	0.38	-0.8
4,263,336	+		DZA65_RS19690	0.38	-0.6
4,263,336	+		DZA65_RS19690	0.38	-1.1
4,263,336	+		DZA65_RS19690	0.38	+0.3
4,263,337	-		DZA65_RS19690	0.38	-1.1
4,263,337	-		DZA65_RS19690	0.38	-0.1
4,263,337	-		DZA65_RS19690	0.38	-1.4
4,263,337	-		DZA65_RS19690	0.38	-1.5
4,263,337	-		DZA65_RS19690	0.38	-1.2
4,263,337	-		DZA65_RS19690	0.38	+0.2
4,263,338	+		DZA65_RS19690	0.38	+0.4
4,263,338	+		DZA65_RS19690	0.38	-2.1
4,263,338	+		DZA65_RS19690	0.38	-1.0
4,263,339	-		DZA65_RS19690	0.39	-0.9
4,263,339	-		DZA65_RS19690	0.39	+0.1
4,263,339	-		DZA65_RS19690	0.39	+1.6
4,263,339	-		DZA65_RS19690	0.39	-0.6
4,263,339	-		DZA65_RS19690	0.39	-1.4
4,263,560	+		DZA65_RS19690	0.50	-0.6
4,263,561	-		DZA65_RS19690	0.50	-2.2
4,263,561	-		DZA65_RS19690	0.50	-0.9
4,263,561	-		DZA65_RS19690	0.50	-1.1
4,263,561	-		DZA65_RS19690	0.50	-0.4
4,263,564	+		DZA65_RS19690	0.50	-0.1
4,263,565	-		DZA65_RS19690	0.50	+0.5
4,263,565	-		DZA65_RS19690	0.50	-0.3
4,263,619	+		DZA65_RS19690	0.53	-1.0
4,263,619	+		DZA65_RS19690	0.53	-0.6
4,263,619	+		DZA65_RS19690	0.53	-0.6
4,263,619	+		DZA65_RS19690	0.53	-0.1
4,263,619	+		DZA65_RS19690	0.53	+0.1
4,263,619	+		DZA65_RS19690	0.53	-0.3
4,263,619	+		DZA65_RS19690	0.53	-1.2
4,263,619	+		DZA65_RS19690	0.53	+0.5
4,263,619	+		DZA65_RS19690	0.53	-0.1
4,263,619	+		DZA65_RS19690	0.53	-0.4
4,263,619	+		DZA65_RS19690	0.53	-1.8
4,263,619	+		DZA65_RS19690	0.53	-1.4
4,263,620	-		DZA65_RS19690	0.53	-0.2
4,263,620	-		DZA65_RS19690	0.53	+1.3
4,263,620	-		DZA65_RS19690	0.53	-2.8
4,263,620	-		DZA65_RS19690	0.53	+0.0
4,263,620	-		DZA65_RS19690	0.53	-1.5
4,263,620	-		DZA65_RS19690	0.53	-0.1
4,263,620	-		DZA65_RS19690	0.53	-0.2
4,263,656	+		DZA65_RS19690	0.55	-0.1
4,263,656	+		DZA65_RS19690	0.55	+0.9
4,263,657	-		DZA65_RS19690	0.55	-0.5
4,263,657	-		DZA65_RS19690	0.55	+0.9
4,263,657	-		DZA65_RS19690	0.55	-2.1
4,263,665	+		DZA65_RS19690	0.55	+2.1
4,263,665	+		DZA65_RS19690	0.55	-0.9
4,263,665	+		DZA65_RS19690	0.55	+2.5
4,263,665	+		DZA65_RS19690	0.55	+1.3
4,263,665	+		DZA65_RS19690	0.55	-0.1
4,263,665	+		DZA65_RS19690	0.55	+0.9
4,263,665	+		DZA65_RS19690	0.55	-1.1
4,263,665	+		DZA65_RS19690	0.55	+2.1
4,263,665	+		DZA65_RS19690	0.55	+1.4
4,263,665	+		DZA65_RS19690	0.55	+1.6
4,263,665	+		DZA65_RS19690	0.55	-0.3
4,263,666	-		DZA65_RS19690	0.55	-1.9
4,263,666	-		DZA65_RS19690	0.55	-0.8
4,263,666	-		DZA65_RS19690	0.55	+0.9
4,263,666	-		DZA65_RS19690	0.55	-1.6
4,263,666	-		DZA65_RS19690	0.55	+0.3
4,263,666	-		DZA65_RS19690	0.55	-0.6
4,263,666	-		DZA65_RS19690	0.55	-0.1
4,263,666	-		DZA65_RS19690	0.55	+1.2
4,263,666	-		DZA65_RS19690	0.55	-0.8
4,263,666	-		DZA65_RS19690	0.55	+0.2
4,263,666	-		DZA65_RS19690	0.55	+0.5
4,263,702	-		DZA65_RS19690	0.57	-0.8
4,263,702	-		DZA65_RS19690	0.57	+0.2
4,263,758	+		DZA65_RS19690	0.60	-1.4
4,263,758	+		DZA65_RS19690	0.60	+0.1
4,263,758	+		DZA65_RS19690	0.60	-0.8
4,263,758	+		DZA65_RS19690	0.60	-1.7
4,263,758	+		DZA65_RS19690	0.60	+0.4
4,263,759	-		DZA65_RS19690	0.60	+0.4
4,263,759	-		DZA65_RS19690	0.60	-0.8
4,263,759	-		DZA65_RS19690	0.60	+0.4
4,263,764	+		DZA65_RS19690	0.61	-1.4
4,263,764	+		DZA65_RS19690	0.61	+0.5
4,263,764	+		DZA65_RS19690	0.61	-0.4
4,263,764	+		DZA65_RS19690	0.61	-0.6
4,263,764	+		DZA65_RS19690	0.61	-0.1
4,263,765	-		DZA65_RS19690	0.61	-0.4
4,263,765	-		DZA65_RS19690	0.61	+2.1
4,263,765	-		DZA65_RS19690	0.61	+0.5
4,263,945	+		DZA65_RS19690	0.70	+0.2
4,263,946	-		DZA65_RS19690	0.70	+0.8
4,263,946	-		DZA65_RS19690	0.70	-0.4
4,264,070	+		DZA65_RS19690	0.76	+0.8
4,264,070	+		DZA65_RS19690	0.76	-0.6
4,264,070	+		DZA65_RS19690	0.76	-0.8
4,264,071	-		DZA65_RS19690	0.76	+0.2
4,264,154	+		DZA65_RS19690	0.81	+0.5
4,264,154	+		DZA65_RS19690	0.81	+1.1
4,264,154	+		DZA65_RS19690	0.81	-1.1
4,264,154	+		DZA65_RS19690	0.81	-1.9
4,264,155	-		DZA65_RS19690	0.81	+0.1
4,264,155	-		DZA65_RS19690	0.81	-0.6
4,264,155	-		DZA65_RS19690	0.81	+0.9
4,264,155	-		DZA65_RS19690	0.81	-0.5
4,264,155	-		DZA65_RS19690	0.81	+0.9
4,264,155	-		DZA65_RS19690	0.81	-1.1
4,264,199	-		DZA65_RS19690	0.83	+0.5
4,264,228	+		DZA65_RS19690	0.85	+0.2
4,264,624	-				-0.3
4,264,624	-				-1.2
4,264,636	+				-1.1
4,264,636	+				-2.1
4,264,636	+				-0.2
4,264,637	-				-0.6
4,264,643	+				-1.1
4,264,644	-				+1.7
4,264,644	-				-0.6
4,264,694	-				+1.5
4,264,694	-				-0.9
4,264,694	-				+0.8
4,264,780	+		DZA65_RS19695	0.14	-2.5
4,264,863	+		DZA65_RS19695	0.19	-1.3
4,264,875	-				+0.4
4,264,875	-		DZA65_RS19695	0.19	+0.2
4,264,875	-		DZA65_RS19695	0.19	+0.9
4,264,917	+		DZA65_RS19695	0.22	+0.5
4,264,917	+		DZA65_RS19695	0.22	-1.6
4,264,917	+		DZA65_RS19695	0.22	+0.6
4,264,917	+		DZA65_RS19695	0.22	-0.4
4,264,917	+		DZA65_RS19695	0.22	+1.4
4,264,917	+		DZA65_RS19695	0.22	+1.5
4,264,918	-		DZA65_RS19695	0.22	-0.6
4,264,918	-		DZA65_RS19695	0.22	-1.6
4,264,918	-		DZA65_RS19695	0.22	-0.6
4,264,918	-		DZA65_RS19695	0.22	-0.8
4,264,918	-		DZA65_RS19695	0.22	-2.1
4,264,918	-		DZA65_RS19695	0.22	-0.9
4,264,918	-		DZA65_RS19695	0.22	+0.5
4,264,918	-		DZA65_RS19695	0.22	-0.9
4,264,918	-		DZA65_RS19695	0.22	-0.3
4,264,918	-		DZA65_RS19695	0.22	-1.4
4,264,924	+		DZA65_RS19695	0.22	+0.8
4,264,924	+		DZA65_RS19695	0.22	+1.3
4,264,924	+		DZA65_RS19695	0.22	-1.6
4,264,925	-		DZA65_RS19695	0.22	+1.7
4,265,016	+		DZA65_RS19695	0.28	+0.6
4,265,023	+		DZA65_RS19695	0.28	+0.1
4,265,042	+		DZA65_RS19695	0.29	-1.9
4,265,042	+		DZA65_RS19695	0.29	-1.6
4,265,042	+		DZA65_RS19695	0.29	+1.8