Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18865

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS18860 and DZA65_RS18865 are separated by 66 nucleotidesDZA65_RS18865 and DZA65_RS18870 are separated by 78 nucleotides DZA65_RS18860: DZA65_RS18860 - sugar ABC transporter permease, at 4,072,287 to 4,073,288 _RS18860 DZA65_RS18865: DZA65_RS18865 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 4,073,355 to 4,074,455 _RS18865 DZA65_RS18870: DZA65_RS18870 - glycosyl hydrolase, at 4,074,534 to 4,075,637 _RS18870 Position (kb) 4073 4074 4075Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4072.380 kb on + strandat 4072.387 kb on + strandat 4072.420 kb on + strand, within DZA65_RS18860at 4072.420 kb on + strand, within DZA65_RS18860at 4072.420 kb on + strand, within DZA65_RS18860at 4072.420 kb on + strand, within DZA65_RS18860at 4072.421 kb on - strand, within DZA65_RS18860at 4072.421 kb on - strand, within DZA65_RS18860at 4072.421 kb on - strand, within DZA65_RS18860at 4072.421 kb on - strand, within DZA65_RS18860at 4072.421 kb on - strand, within DZA65_RS18860at 4072.421 kb on - strand, within DZA65_RS18860at 4072.421 kb on - strand, within DZA65_RS18860at 4072.426 kb on + strand, within DZA65_RS18860at 4072.426 kb on + strand, within DZA65_RS18860at 4072.426 kb on + strand, within DZA65_RS18860at 4072.426 kb on + strand, within DZA65_RS18860at 4072.426 kb on + strand, within DZA65_RS18860at 4072.426 kb on + strand, within DZA65_RS18860at 4072.426 kb on + strand, within DZA65_RS18860at 4072.426 kb on + strand, within DZA65_RS18860at 4072.426 kb on + strand, within DZA65_RS18860at 4072.426 kb on + strand, within DZA65_RS18860at 4072.426 kb on + strand, within DZA65_RS18860at 4072.426 kb on + strand, within DZA65_RS18860at 4072.426 kb on + strand, within DZA65_RS18860at 4072.426 kb on + strand, within DZA65_RS18860at 4072.426 kb on + strand, within DZA65_RS18860at 4072.426 kb on + strand, within DZA65_RS18860at 4072.426 kb on + strand, within DZA65_RS18860at 4072.426 kb on + strand, within DZA65_RS18860at 4072.427 kb on - strand, within DZA65_RS18860at 4072.427 kb on - strand, within DZA65_RS18860at 4072.427 kb on - strand, within DZA65_RS18860at 4072.427 kb on - strand, within DZA65_RS18860at 4072.427 kb on - strand, within DZA65_RS18860at 4072.427 kb on - strand, within DZA65_RS18860at 4072.427 kb on - strand, within DZA65_RS18860at 4072.427 kb on - strand, within DZA65_RS18860at 4072.427 kb on - strand, within DZA65_RS18860at 4072.427 kb on - strand, within DZA65_RS18860at 4072.436 kb on + strand, within DZA65_RS18860at 4072.436 kb on + strand, within DZA65_RS18860at 4072.436 kb on + strand, within DZA65_RS18860at 4072.436 kb on + strand, within DZA65_RS18860at 4072.437 kb on - strand, within DZA65_RS18860at 4072.571 kb on - strand, within DZA65_RS18860at 4072.615 kb on + strand, within DZA65_RS18860at 4072.615 kb on + strand, within DZA65_RS18860at 4072.615 kb on + strand, within DZA65_RS18860at 4072.615 kb on + strand, within DZA65_RS18860at 4072.616 kb on - strand, within DZA65_RS18860at 4072.616 kb on - strand, within DZA65_RS18860at 4072.616 kb on - strand, within DZA65_RS18860at 4072.616 kb on - strand, within DZA65_RS18860at 4072.619 kb on + strand, within DZA65_RS18860at 4072.619 kb on + strand, within DZA65_RS18860at 4072.662 kb on - strand, within DZA65_RS18860at 4072.662 kb on - strand, within DZA65_RS18860at 4072.662 kb on - strand, within DZA65_RS18860at 4072.663 kb on + strand, within DZA65_RS18860at 4072.663 kb on + strand, within DZA65_RS18860at 4072.663 kb on + strand, within DZA65_RS18860at 4072.663 kb on + strand, within DZA65_RS18860at 4072.664 kb on - strand, within DZA65_RS18860at 4072.664 kb on - strand, within DZA65_RS18860at 4072.925 kb on + strand, within DZA65_RS18860at 4072.925 kb on + strand, within DZA65_RS18860at 4072.925 kb on + strand, within DZA65_RS18860at 4072.926 kb on - strand, within DZA65_RS18860at 4072.926 kb on - strand, within DZA65_RS18860at 4072.938 kb on - strand, within DZA65_RS18860at 4072.964 kb on - strand, within DZA65_RS18860at 4072.964 kb on - strand, within DZA65_RS18860at 4073.011 kb on + strand, within DZA65_RS18860at 4073.011 kb on + strand, within DZA65_RS18860at 4073.012 kb on - strand, within DZA65_RS18860at 4073.012 kb on - strand, within DZA65_RS18860at 4073.012 kb on - strand, within DZA65_RS18860at 4073.057 kb on - strand, within DZA65_RS18860at 4073.057 kb on - strand, within DZA65_RS18860at 4073.101 kb on + strand, within DZA65_RS18860at 4073.101 kb on + strand, within DZA65_RS18860at 4073.102 kb on - strand, within DZA65_RS18860at 4073.102 kb on - strand, within DZA65_RS18860at 4073.126 kb on + strand, within DZA65_RS18860at 4073.181 kb on + strand, within DZA65_RS18860at 4073.181 kb on + strand, within DZA65_RS18860at 4073.181 kb on + strand, within DZA65_RS18860at 4073.181 kb on + strand, within DZA65_RS18860at 4073.182 kb on - strand, within DZA65_RS18860at 4073.182 kb on - strand, within DZA65_RS18860at 4073.182 kb on - strand, within DZA65_RS18860at 4073.244 kb on - strandat 4073.244 kb on - strandat 4073.339 kb on + strandat 4073.419 kb on + strandat 4073.419 kb on + strandat 4073.419 kb on + strandat 4073.419 kb on + strandat 4073.505 kb on - strand, within DZA65_RS18865at 4073.521 kb on + strand, within DZA65_RS18865at 4073.525 kb on + strand, within DZA65_RS18865at 4073.525 kb on + strand, within DZA65_RS18865at 4073.525 kb on + strand, within DZA65_RS18865at 4073.526 kb on - strand, within DZA65_RS18865at 4073.526 kb on - strand, within DZA65_RS18865at 4073.526 kb on - strand, within DZA65_RS18865at 4073.526 kb on - strand, within DZA65_RS18865at 4073.526 kb on - strand, within DZA65_RS18865at 4073.735 kb on + strand, within DZA65_RS18865at 4073.735 kb on + strand, within DZA65_RS18865at 4073.735 kb on + strand, within DZA65_RS18865at 4073.735 kb on + strand, within DZA65_RS18865at 4073.735 kb on + strand, within DZA65_RS18865at 4073.735 kb on + strand, within DZA65_RS18865at 4073.735 kb on + strand, within DZA65_RS18865at 4073.735 kb on + strand, within DZA65_RS18865at 4073.735 kb on + strand, within DZA65_RS18865at 4073.735 kb on + strand, within DZA65_RS18865at 4073.735 kb on + strand, within DZA65_RS18865at 4073.735 kb on + strand, within DZA65_RS18865at 4073.735 kb on + strand, within DZA65_RS18865at 4073.735 kb on + strand, within DZA65_RS18865at 4073.735 kb on + strand, within DZA65_RS18865at 4073.735 kb on + strand, within DZA65_RS18865at 4073.735 kb on + strand, within DZA65_RS18865at 4073.735 kb on + strand, within DZA65_RS18865at 4073.736 kb on - strand, within DZA65_RS18865at 4073.736 kb on - strand, within DZA65_RS18865at 4073.736 kb on - strand, within DZA65_RS18865at 4073.736 kb on - strand, within DZA65_RS18865at 4073.736 kb on - strand, within DZA65_RS18865at 4073.736 kb on - strand, within DZA65_RS18865at 4073.736 kb on - strand, within DZA65_RS18865at 4073.871 kb on + strand, within DZA65_RS18865at 4073.872 kb on - strand, within DZA65_RS18865at 4073.890 kb on + strand, within DZA65_RS18865at 4073.890 kb on + strand, within DZA65_RS18865at 4073.890 kb on + strand, within DZA65_RS18865at 4073.890 kb on + strand, within DZA65_RS18865at 4073.890 kb on + strand, within DZA65_RS18865at 4073.890 kb on + strand, within DZA65_RS18865at 4073.890 kb on + strand, within DZA65_RS18865at 4073.890 kb on + strand, within DZA65_RS18865at 4073.890 kb on + strand, within DZA65_RS18865at 4073.891 kb on - strand, within DZA65_RS18865at 4073.891 kb on - strand, within DZA65_RS18865at 4073.891 kb on - strand, within DZA65_RS18865at 4073.891 kb on - strand, within DZA65_RS18865at 4074.196 kb on + strand, within DZA65_RS18865at 4074.205 kb on + strand, within DZA65_RS18865at 4074.319 kb on - strand, within DZA65_RS18865at 4074.333 kb on - strand, within DZA65_RS18865at 4074.333 kb on - strand, within DZA65_RS18865at 4074.381 kb on + strandat 4074.401 kb on + strandat 4074.409 kb on - strandat 4074.419 kb on - strandat 4074.419 kb on - strandat 4074.439 kb on - strandat 4074.616 kb on + strandat 4074.617 kb on - strandat 4074.617 kb on - strandat 4074.890 kb on + strand, within DZA65_RS18870at 4075.037 kb on - strand, within DZA65_RS18870at 4075.067 kb on - strand, within DZA65_RS18870at 4075.080 kb on + strand, within DZA65_RS18870at 4075.080 kb on + strand, within DZA65_RS18870at 4075.080 kb on + strand, within DZA65_RS18870at 4075.081 kb on - strand, within DZA65_RS18870at 4075.081 kb on - strand, within DZA65_RS18870at 4075.091 kb on - strand, within DZA65_RS18870at 4075.091 kb on - strand, within DZA65_RS18870at 4075.161 kb on - strand, within DZA65_RS18870at 4075.161 kb on - strand, within DZA65_RS18870at 4075.161 kb on - strand, within DZA65_RS18870at 4075.390 kb on + strand, within DZA65_RS18870

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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4,072,380 + -1.1
4,072,387 + -2.3
4,072,420 + DZA65_RS18860 0.13 -1.7
4,072,420 + DZA65_RS18860 0.13 -3.0
4,072,420 + DZA65_RS18860 0.13 +0.4
4,072,420 + DZA65_RS18860 0.13 -0.1
4,072,421 - DZA65_RS18860 0.13 -0.5
4,072,421 - DZA65_RS18860 0.13 +1.1
4,072,421 - DZA65_RS18860 0.13 +0.1
4,072,421 - DZA65_RS18860 0.13 +1.2
4,072,421 - DZA65_RS18860 0.13 +1.1
4,072,421 - DZA65_RS18860 0.13 -1.1
4,072,421 - DZA65_RS18860 0.13 -1.0
4,072,426 + DZA65_RS18860 0.14 -1.0
4,072,426 + DZA65_RS18860 0.14 +1.7
4,072,426 + DZA65_RS18860 0.14 +0.9
4,072,426 + DZA65_RS18860 0.14 +0.3
4,072,426 + DZA65_RS18860 0.14 -1.1
4,072,426 + DZA65_RS18860 0.14 +0.9
4,072,426 + DZA65_RS18860 0.14 +1.6
4,072,426 + DZA65_RS18860 0.14 +0.9
4,072,426 + DZA65_RS18860 0.14 +0.5
4,072,426 + DZA65_RS18860 0.14 +1.6
4,072,426 + DZA65_RS18860 0.14 -1.5
4,072,426 + DZA65_RS18860 0.14 +0.6
4,072,426 + DZA65_RS18860 0.14 +1.1
4,072,426 + DZA65_RS18860 0.14 -1.0
4,072,426 + DZA65_RS18860 0.14 -0.1
4,072,426 + DZA65_RS18860 0.14 +0.1
4,072,426 + DZA65_RS18860 0.14 -0.7
4,072,426 + DZA65_RS18860 0.14 -0.6
4,072,427 - DZA65_RS18860 0.14 -0.8
4,072,427 - DZA65_RS18860 0.14 -0.1
4,072,427 - DZA65_RS18860 0.14 -0.3
4,072,427 - DZA65_RS18860 0.14 +2.5
4,072,427 - DZA65_RS18860 0.14 +2.3
4,072,427 - DZA65_RS18860 0.14 -0.5
4,072,427 - DZA65_RS18860 0.14 -2.2
4,072,427 - DZA65_RS18860 0.14 -2.0
4,072,427 - DZA65_RS18860 0.14 -0.1
4,072,427 - DZA65_RS18860 0.14 +1.1
4,072,436 + DZA65_RS18860 0.15 +1.7
4,072,436 + DZA65_RS18860 0.15 +0.0
4,072,436 + DZA65_RS18860 0.15 +0.7
4,072,436 + DZA65_RS18860 0.15 -1.7
4,072,437 - DZA65_RS18860 0.15 -0.4
4,072,571 - DZA65_RS18860 0.28 -1.1
4,072,615 + DZA65_RS18860 0.33 -1.6
4,072,615 + DZA65_RS18860 0.33 +0.9
4,072,615 + DZA65_RS18860 0.33 -1.6
4,072,615 + DZA65_RS18860 0.33 +0.1
4,072,616 - DZA65_RS18860 0.33 -1.5
4,072,616 - DZA65_RS18860 0.33 -0.1
4,072,616 - DZA65_RS18860 0.33 +0.5
4,072,616 - DZA65_RS18860 0.33 +0.0
4,072,619 + DZA65_RS18860 0.33 +0.0
4,072,619 + DZA65_RS18860 0.33 +1.1
4,072,662 - DZA65_RS18860 0.37 -0.1
4,072,662 - DZA65_RS18860 0.37 -1.8
4,072,662 - DZA65_RS18860 0.37 -0.6
4,072,663 + DZA65_RS18860 0.38 -1.7
4,072,663 + DZA65_RS18860 0.38 -2.6
4,072,663 + DZA65_RS18860 0.38 +0.2
4,072,663 + DZA65_RS18860 0.38 +1.5
4,072,664 - DZA65_RS18860 0.38 -0.5
4,072,664 - DZA65_RS18860 0.38 -0.3
4,072,925 + DZA65_RS18860 0.64 +0.3
4,072,925 + DZA65_RS18860 0.64 -0.6
4,072,925 + DZA65_RS18860 0.64 +0.9
4,072,926 - DZA65_RS18860 0.64 -1.1
4,072,926 - DZA65_RS18860 0.64 -1.1
4,072,938 - DZA65_RS18860 0.65 -2.0
4,072,964 - DZA65_RS18860 0.68 +1.4
4,072,964 - DZA65_RS18860 0.68 +0.9
4,073,011 + DZA65_RS18860 0.72 +0.6
4,073,011 + DZA65_RS18860 0.72 +0.4
4,073,012 - DZA65_RS18860 0.72 -0.5
4,073,012 - DZA65_RS18860 0.72 -0.7
4,073,012 - DZA65_RS18860 0.72 -0.3
4,073,057 - DZA65_RS18860 0.77 +0.5
4,073,057 - DZA65_RS18860 0.77 +1.3
4,073,101 + DZA65_RS18860 0.81 -1.0
4,073,101 + DZA65_RS18860 0.81 +0.1
4,073,102 - DZA65_RS18860 0.81 -2.8
4,073,102 - DZA65_RS18860 0.81 -2.0
4,073,126 + DZA65_RS18860 0.84 +0.9
4,073,181 + DZA65_RS18860 0.89 -1.6
4,073,181 + DZA65_RS18860 0.89 +0.1
4,073,181 + DZA65_RS18860 0.89 +0.5
4,073,181 + DZA65_RS18860 0.89 +1.2
4,073,182 - DZA65_RS18860 0.89 +1.2
4,073,182 - DZA65_RS18860 0.89 -0.7
4,073,182 - DZA65_RS18860 0.89 +0.3
4,073,244 - +0.4
4,073,244 - +0.0
4,073,339 + +0.1
4,073,419 + -1.7
4,073,419 + -0.4
4,073,419 + +0.3
4,073,419 + +1.1
4,073,505 - DZA65_RS18865 0.14 +1.1
4,073,521 + DZA65_RS18865 0.15 +0.7
4,073,525 + DZA65_RS18865 0.15 -1.0
4,073,525 + DZA65_RS18865 0.15 +1.0
4,073,525 + DZA65_RS18865 0.15 -2.0
4,073,526 - DZA65_RS18865 0.16 -0.1
4,073,526 - DZA65_RS18865 0.16 -0.6
4,073,526 - DZA65_RS18865 0.16 -1.0
4,073,526 - DZA65_RS18865 0.16 -2.5
4,073,526 - DZA65_RS18865 0.16 -1.0
4,073,735 + DZA65_RS18865 0.35 +0.0
4,073,735 + DZA65_RS18865 0.35 -0.8
4,073,735 + DZA65_RS18865 0.35 -0.7
4,073,735 + DZA65_RS18865 0.35 +0.4
4,073,735 + DZA65_RS18865 0.35 +0.3
4,073,735 + DZA65_RS18865 0.35 +0.0
4,073,735 + DZA65_RS18865 0.35 +0.2
4,073,735 + DZA65_RS18865 0.35 -0.1
4,073,735 + DZA65_RS18865 0.35 -1.3
4,073,735 + DZA65_RS18865 0.35 +0.1
4,073,735 + DZA65_RS18865 0.35 -0.5
4,073,735 + DZA65_RS18865 0.35 -1.5
4,073,735 + DZA65_RS18865 0.35 -0.4
4,073,735 + DZA65_RS18865 0.35 +0.6
4,073,735 + DZA65_RS18865 0.35 -1.2
4,073,735 + DZA65_RS18865 0.35 +0.9
4,073,735 + DZA65_RS18865 0.35 -0.7
4,073,735 + DZA65_RS18865 0.35 -0.7
4,073,736 - DZA65_RS18865 0.35 +0.0
4,073,736 - DZA65_RS18865 0.35 +1.1
4,073,736 - DZA65_RS18865 0.35 -1.0
4,073,736 - DZA65_RS18865 0.35 +0.9
4,073,736 - DZA65_RS18865 0.35 -2.5
4,073,736 - DZA65_RS18865 0.35 +0.7
4,073,736 - DZA65_RS18865 0.35 -2.3
4,073,871 + DZA65_RS18865 0.47 -0.6
4,073,872 - DZA65_RS18865 0.47 +1.7
4,073,890 + DZA65_RS18865 0.49 -1.0
4,073,890 + DZA65_RS18865 0.49 -1.7
4,073,890 + DZA65_RS18865 0.49 -0.5
4,073,890 + DZA65_RS18865 0.49 -0.4
4,073,890 + DZA65_RS18865 0.49 +0.6
4,073,890 + DZA65_RS18865 0.49 +0.3
4,073,890 + DZA65_RS18865 0.49 +1.1
4,073,890 + DZA65_RS18865 0.49 +0.3
4,073,890 + DZA65_RS18865 0.49 -2.1
4,073,891 - DZA65_RS18865 0.49 +0.1
4,073,891 - DZA65_RS18865 0.49 -0.8
4,073,891 - DZA65_RS18865 0.49 +2.1
4,073,891 - DZA65_RS18865 0.49 +0.3
4,074,196 + DZA65_RS18865 0.76 -1.5
4,074,205 + DZA65_RS18865 0.77 +0.4
4,074,319 - DZA65_RS18865 0.88 -1.1
4,074,333 - DZA65_RS18865 0.89 +0.5
4,074,333 - DZA65_RS18865 0.89 -0.4
4,074,381 + -1.0
4,074,401 + +1.3
4,074,409 - +0.2
4,074,419 - -2.0
4,074,419 - +1.1
4,074,439 - -0.0
4,074,616 + -0.1
4,074,617 - -1.7
4,074,617 - +2.4
4,074,890 + DZA65_RS18870 0.32 +3.3
4,075,037 - DZA65_RS18870 0.46 +0.9
4,075,067 - DZA65_RS18870 0.48 -0.0
4,075,080 + DZA65_RS18870 0.49 +0.9
4,075,080 + DZA65_RS18870 0.49 -0.3
4,075,080 + DZA65_RS18870 0.49 -1.5
4,075,081 - DZA65_RS18870 0.50 +1.1
4,075,081 - DZA65_RS18870 0.50 +1.9
4,075,091 - DZA65_RS18870 0.50 -0.3
4,075,091 - DZA65_RS18870 0.50 +0.6
4,075,161 - DZA65_RS18870 0.57 -0.9
4,075,161 - DZA65_RS18870 0.57 -0.4
4,075,161 - DZA65_RS18870 0.57 +0.4
4,075,390 + DZA65_RS18870 0.78 +0.1

Or see this region's nucleotide sequence