Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18380

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,960,873	+				+0.7
3,960,874	-				-0.9
3,960,896	+				+0.1
3,960,896	+				-0.8
3,960,897	-				-0.1
3,960,897	-				-0.5
3,960,907	+				-1.5
3,960,908	-				+0.1
3,960,908	-				-3.0
3,960,930	+				+0.2
3,960,931	-				-1.5
3,960,931	-				+0.4
3,961,045	+		DZA65_RS18380	0.11	-0.8
3,961,045	+		DZA65_RS18380	0.11	-0.6
3,961,045	+		DZA65_RS18380	0.11	+1.7
3,961,045	+		DZA65_RS18380	0.11	-2.3
3,961,046	-		DZA65_RS18380	0.11	-0.2
3,961,046	-		DZA65_RS18380	0.11	+0.5
3,961,077	+		DZA65_RS18380	0.15	+0.2
3,961,077	+		DZA65_RS18380	0.15	+1.2
3,961,218	+		DZA65_RS18380	0.34	+0.2
3,961,218	+				+1.2
3,961,218	+		DZA65_RS18380	0.34	-1.2
3,961,219	-		DZA65_RS18380	0.34	+0.1
3,961,219	-		DZA65_RS18380	0.34	-1.5
3,961,301	+		DZA65_RS18380	0.45	-0.3
3,961,454	+		DZA65_RS18380	0.65	+0.1
3,961,454	+		DZA65_RS18380	0.65	-1.2
3,961,454	+		DZA65_RS18380	0.65	+1.0
3,961,454	+		DZA65_RS18380	0.65	+0.7
3,961,454	+		DZA65_RS18380	0.65	-2.0
3,961,454	+		DZA65_RS18380	0.65	+0.2
3,961,454	+		DZA65_RS18380	0.65	-1.0
3,961,454	+		DZA65_RS18380	0.65	-0.2
3,961,455	-		DZA65_RS18380	0.66	+0.0
3,961,455	-		DZA65_RS18380	0.66	-1.2
3,961,467	-		DZA65_RS18380	0.67	-0.6
3,961,579	+		DZA65_RS18380	0.82	+0.2
3,961,585	+		DZA65_RS18380	0.83	-1.0
3,961,585	+		DZA65_RS18380	0.83	-0.5
3,961,586	-		DZA65_RS18380	0.83	+0.1
3,961,604	+		DZA65_RS18380	0.85	-0.9
3,961,604	+		DZA65_RS18380	0.85	-0.4
3,961,604	+		DZA65_RS18380	0.85	+0.8
3,961,604	+		DZA65_RS18380	0.85	-0.5
3,961,604	+		DZA65_RS18380	0.85	+1.9
3,961,604	+		DZA65_RS18380	0.85	+0.0
3,961,604	+		DZA65_RS18380	0.85	-0.1
3,961,604	+		DZA65_RS18380	0.85	-1.3
3,961,605	-		DZA65_RS18380	0.86	+0.2
3,961,605	-		DZA65_RS18380	0.86	+0.1
3,961,605	-		DZA65_RS18380	0.86	-0.4
3,961,605	-		DZA65_RS18380	0.86	+0.5
3,961,605	-		DZA65_RS18380	0.86	+1.3
3,961,605	-		DZA65_RS18380	0.86	-1.5
3,961,606	+		DZA65_RS18380	0.86	+0.2
3,961,606	+		DZA65_RS18380	0.86	-0.6
3,961,606	+		DZA65_RS18380	0.86	-1.1
3,961,607	-		DZA65_RS18380	0.86	-0.7
3,961,607	-		DZA65_RS18380	0.86	+0.4
3,961,678	-				+0.8
3,961,678	-				-2.3
3,961,707	+				+1.2
3,961,708	-				-0.5
3,961,744	+				-1.5
3,961,744	+				-0.2
3,961,744	+				-0.3
3,961,745	-				-2.0
3,961,745	-				-3.1
3,961,763	+				+1.0
3,961,770	-				+0.2
3,961,776	+				-0.4
3,961,776	+				-1.6
3,961,778	+				-0.6
3,961,779	-				-0.2
3,961,779	-				-0.1
3,961,809	+				-0.7
3,961,834	-				-0.5
3,961,861	+				+0.0
3,961,862	-				-0.0
3,961,862	-				+1.8
3,961,900	-				-0.2
3,961,909	+				-2.5
3,961,912	+				-0.9
3,961,913	-				-0.5
3,961,913	-				-0.2
3,961,913	-				+1.2
3,961,913	-				+0.4
3,961,913	-				-0.3
3,961,924	+				+0.4
3,961,924	+				-1.0
3,961,924	+				+0.2
3,961,924	+				-1.2
3,961,925	-				+0.8
3,961,925	-				+0.4
3,961,935	-				+0.4
3,961,935	-				+0.6
3,961,935	-				+1.1
3,962,102	+				+0.2
3,962,106	-				+0.5
3,962,117	-				+0.6
3,962,117	-				+0.8
3,962,124	+				+1.4
3,962,124	+				+1.1
3,962,124	+				-0.0
3,962,124	+				-1.0
3,962,124	+				-1.2
3,962,124	+				-0.2
3,962,124	+				+0.4
3,962,125	-				+0.3
3,962,125	-				+0.0
3,962,125	-				-0.2
3,962,125	-				-0.6
3,962,125	-				+2.2
3,962,125	-				+0.2
3,962,157	+		DZA65_RS18385	0.11	-1.4
3,962,157	+		DZA65_RS18385	0.11	+0.5
3,962,157	+		DZA65_RS18385	0.11	+1.9
3,962,157	+		DZA65_RS18385	0.11	+0.2
3,962,157	+		DZA65_RS18385	0.11	+2.9
3,962,157	+		DZA65_RS18385	0.11	-1.2
3,962,157	+		DZA65_RS18385	0.11	-0.2
3,962,157	+		DZA65_RS18385	0.11	-0.8
3,962,157	+		DZA65_RS18385	0.11	+0.1
3,962,157	+		DZA65_RS18385	0.11	+0.1
3,962,157	+		DZA65_RS18385	0.11	+0.6
3,962,157	+		DZA65_RS18385	0.11	+0.8
3,962,158	-		DZA65_RS18385	0.11	+0.5
3,962,158	-		DZA65_RS18385	0.11	-1.0
3,962,158	-		DZA65_RS18385	0.11	-0.3
3,962,158	-		DZA65_RS18385	0.11	+0.5
3,962,158	-		DZA65_RS18385	0.11	+1.0
3,962,158	-		DZA65_RS18385	0.11	+0.8
3,962,158	-		DZA65_RS18385	0.11	+1.0
3,962,158	-		DZA65_RS18385	0.11	+1.2
3,962,158	-		DZA65_RS18385	0.11	-1.2
3,962,158	-		DZA65_RS18385	0.11	-0.8
3,962,158	-		DZA65_RS18385	0.11	-0.8
3,962,158	-		DZA65_RS18385	0.11	-0.5
3,962,158	-		DZA65_RS18385	0.11	-1.3
3,962,158	-		DZA65_RS18385	0.11	+0.1
3,962,159	+		DZA65_RS18385	0.11	-0.8
3,962,159	+		DZA65_RS18385	0.11	+0.8
3,962,160	-		DZA65_RS18385	0.11	-0.2
3,962,261	+		DZA65_RS18385	0.17	+1.1
3,962,261	+		DZA65_RS18385	0.17	-1.2
3,962,262	-		DZA65_RS18385	0.17	-0.8
3,962,262	-		DZA65_RS18385	0.17	+0.6
3,962,360	+		DZA65_RS18385	0.22	-0.3
3,962,360	+		DZA65_RS18385	0.22	+0.4
3,962,387	+		DZA65_RS18385	0.23	+1.2
3,962,388	-		DZA65_RS18385	0.23	-1.7
3,962,388	-		DZA65_RS18385	0.23	+1.0
3,962,493	+				+0.8
3,962,493	+		DZA65_RS18385	0.29	-2.0
3,962,493	+		DZA65_RS18385	0.29	-1.2
3,962,493	+		DZA65_RS18385	0.29	-0.6
3,962,493	+		DZA65_RS18385	0.29	+0.2
3,962,493	+		DZA65_RS18385	0.29	-0.2
3,962,493	+		DZA65_RS18385	0.29	+0.2
3,962,493	+		DZA65_RS18385	0.29	+1.2
3,962,493	+		DZA65_RS18385	0.29	-1.8
3,962,493	+		DZA65_RS18385	0.29	+0.4
3,962,493	+		DZA65_RS18385	0.29	+0.1
3,962,493	+		DZA65_RS18385	0.29	+0.1
3,962,493	+		DZA65_RS18385	0.29	+1.4
3,962,493	+		DZA65_RS18385	0.29	+1.8
3,962,493	+		DZA65_RS18385	0.29	-1.3
3,962,493	+		DZA65_RS18385	0.29	+0.7
3,962,493	+		DZA65_RS18385	0.29	-0.8
3,962,493	+		DZA65_RS18385	0.29	+1.1
3,962,493	+		DZA65_RS18385	0.29	-1.3
3,962,493	+		DZA65_RS18385	0.29	+0.2
3,962,493	+		DZA65_RS18385	0.29	-1.3
3,962,493	+		DZA65_RS18385	0.29	-1.8
3,962,494	-		DZA65_RS18385	0.29	-0.7
3,962,494	-		DZA65_RS18385	0.29	-0.6
3,962,494	-		DZA65_RS18385	0.29	-0.3
3,962,494	-		DZA65_RS18385	0.29	-0.1
3,962,494	-		DZA65_RS18385	0.29	-0.4
3,962,494	-		DZA65_RS18385	0.29	+1.4
3,962,494	-		DZA65_RS18385	0.29	-0.8
3,962,494	-		DZA65_RS18385	0.29	+0.1
3,962,494	-		DZA65_RS18385	0.29	+1.4
3,962,494	-		DZA65_RS18385	0.29	-0.5
3,962,494	-		DZA65_RS18385	0.29	-0.5
3,962,494	-		DZA65_RS18385	0.29	+0.7
3,962,494	-		DZA65_RS18385	0.29	-0.2
3,962,494	-		DZA65_RS18385	0.29	+1.5
3,962,494	-		DZA65_RS18385	0.29	-0.7
3,962,494	-		DZA65_RS18385	0.29	-2.5
3,962,495	+		DZA65_RS18385	0.29	+0.8
3,962,495	+		DZA65_RS18385	0.29	+0.6
3,962,495	+		DZA65_RS18385	0.29	+0.4
3,962,495	+		DZA65_RS18385	0.29	+0.6
3,962,495	+		DZA65_RS18385	0.29	-0.2
3,962,495	+		DZA65_RS18385	0.29	-1.2
3,962,495	+		DZA65_RS18385	0.29	+1.2
3,962,495	+		DZA65_RS18385	0.29	+0.5
3,962,495	+		DZA65_RS18385	0.29	-1.3
3,962,495	+		DZA65_RS18385	0.29	+1.8
3,962,495	+		DZA65_RS18385	0.29	-0.9
3,962,495	+		DZA65_RS18385	0.29	-0.3
3,962,495	+		DZA65_RS18385	0.29	+0.2
3,962,495	+		DZA65_RS18385	0.29	-1.3
3,962,495	+		DZA65_RS18385	0.29	+0.2
3,962,496	-		DZA65_RS18385	0.29	-1.2
3,962,496	-		DZA65_RS18385	0.29	+0.8
3,962,496	-		DZA65_RS18385	0.29	+2.1
3,962,496	-		DZA65_RS18385	0.29	-0.6
3,962,496	-		DZA65_RS18385	0.29	-0.5
3,962,496	-		DZA65_RS18385	0.29	+0.6
3,962,496	-		DZA65_RS18385	0.29	+1.1
3,962,496	-		DZA65_RS18385	0.29	-0.0
3,962,496	-		DZA65_RS18385	0.29	+0.3
3,962,564	+		DZA65_RS18385	0.32	-0.6
3,962,565	-		DZA65_RS18385	0.32	-1.8
3,962,565	-		DZA65_RS18385	0.32	+1.0
3,962,597	+		DZA65_RS18385	0.34	-2.2
3,962,598	-		DZA65_RS18385	0.34	+0.1
3,962,598	-		DZA65_RS18385	0.34	+2.2
3,962,598	-		DZA65_RS18385	0.34	+0.3
3,962,642	+		DZA65_RS18385	0.36	+0.1
3,962,642	+		DZA65_RS18385	0.36	+0.3
3,962,642	+		DZA65_RS18385	0.36	+1.2
3,962,642	+		DZA65_RS18385	0.36	-0.5
3,962,643	-		DZA65_RS18385	0.36	-0.2
3,962,643	-		DZA65_RS18385	0.36	+0.3
3,962,643	-		DZA65_RS18385	0.36	-0.2
3,962,643	-		DZA65_RS18385	0.36	-0.2
3,962,670	+		DZA65_RS18385	0.38	-0.5
3,962,670	+		DZA65_RS18385	0.38	+1.2
3,962,671	-		DZA65_RS18385	0.38	-1.3