Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18180

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,917,426	-		DZA65_RS18175	0.42	+0.6
3,917,426	-		DZA65_RS18175	0.42	+0.8
3,917,594	+		DZA65_RS18175	0.55	+0.1
3,917,707	+		DZA65_RS18175	0.63	-0.2
3,917,740	+		DZA65_RS18175	0.66	-1.0
3,917,740	+		DZA65_RS18175	0.66	-0.1
3,917,740	+				+0.8
3,917,740	+		DZA65_RS18175	0.66	-0.9
3,917,740	+		DZA65_RS18175	0.66	-0.2
3,917,740	+		DZA65_RS18175	0.66	+0.1
3,917,740	+		DZA65_RS18175	0.66	+0.1
3,917,740	+		DZA65_RS18175	0.66	-0.4
3,917,740	+		DZA65_RS18175	0.66	+0.0
3,917,740	+		DZA65_RS18175	0.66	-0.0
3,917,740	+		DZA65_RS18175	0.66	-0.8
3,917,741	-		DZA65_RS18175	0.66	+0.1
3,917,741	-				+0.5
3,917,741	-		DZA65_RS18175	0.66	+1.1
3,917,741	-		DZA65_RS18175	0.66	+0.8
3,917,741	-		DZA65_RS18175	0.66	+1.2
3,917,749	+		DZA65_RS18175	0.67	+1.1
3,917,749	+		DZA65_RS18175	0.67	-0.0
3,917,750	-		DZA65_RS18175	0.67	-0.2
3,917,750	-		DZA65_RS18175	0.67	-0.2
3,917,949	+		DZA65_RS18175	0.81	+0.6
3,917,949	+		DZA65_RS18175	0.81	-1.1
3,917,949	+		DZA65_RS18175	0.81	+1.1
3,917,950	-		DZA65_RS18175	0.82	-1.7
3,917,950	-		DZA65_RS18175	0.82	-2.7
3,917,950	-		DZA65_RS18175	0.82	+0.5
3,917,960	-		DZA65_RS18175	0.82	+0.5
3,917,960	-		DZA65_RS18175	0.82	+0.1
3,917,975	+		DZA65_RS18175	0.83	-0.8
3,917,975	+		DZA65_RS18175	0.83	+0.5
3,917,975	+		DZA65_RS18175	0.83	-0.7
3,917,976	-		DZA65_RS18175	0.83	+0.8
3,918,068	+				-0.2
3,918,069	-				-1.2
3,918,069	-				+0.2
3,918,080	+				+1.8
3,918,094	+				+0.6
3,918,095	-				-1.2
3,918,095	-				+0.5
3,918,161	+				-0.6
3,918,161	+				+0.3
3,918,162	-				+0.1
3,918,170	+				+0.5
3,918,171	-				-0.5
3,918,200	+				+0.0
3,918,200	+				-0.8
3,918,200	+				+0.3
3,918,200	+				+2.0
3,918,200	+				-0.5
3,918,200	+				-0.7
3,918,201	-				+1.2
3,918,201	-				+2.7
3,918,201	-				-2.2
3,918,201	-				+0.1
3,918,201	-				-0.1
3,918,214	+				-0.2
3,918,222	-				+1.3
3,918,222	-				-0.8
3,918,222	-				+0.8
3,918,222	-				-2.0
3,918,222	-				-2.2
3,918,222	-				+2.0
3,918,234	+				-1.8
3,918,289	+				-0.6
3,918,289	+				-1.0
3,918,289	+				+0.4
3,918,289	+				+0.1
3,918,289	+				-2.1
3,918,335	+				-0.4
3,918,335	+				-0.5
3,918,336	-				+0.8
3,918,336	-				-1.5
3,918,423	+		DZA65_RS18180	0.15	-1.5
3,918,423	+		DZA65_RS18180	0.15	-0.8
3,918,423	+		DZA65_RS18180	0.15	+0.9
3,918,424	-		DZA65_RS18180	0.15	-1.7
3,918,424	-		DZA65_RS18180	0.15	+1.2
3,918,494	+		DZA65_RS18180	0.21	+0.6
3,918,650	+		DZA65_RS18180	0.32	+0.4
3,918,651	-		DZA65_RS18180	0.32	-0.8
3,918,802	+		DZA65_RS18180	0.43	+0.8
3,918,803	-		DZA65_RS18180	0.43	+0.4
3,918,803	-		DZA65_RS18180	0.43	+0.8
3,918,803	-		DZA65_RS18180	0.43	+1.9
3,918,803	-		DZA65_RS18180	0.43	+1.5
3,918,803	-		DZA65_RS18180	0.43	-0.7
3,918,803	-		DZA65_RS18180	0.43	-0.8
3,918,803	-		DZA65_RS18180	0.43	-2.7
3,918,946	-		DZA65_RS18180	0.54	-0.2
3,919,051	+		DZA65_RS18180	0.62	-0.6
3,919,051	+		DZA65_RS18180	0.62	+1.4
3,919,052	-		DZA65_RS18180	0.62	-0.8
3,919,084	+		DZA65_RS18180	0.64	-0.8
3,919,085	-		DZA65_RS18180	0.64	-1.7
3,919,115	+		DZA65_RS18180	0.66	+0.2
3,919,117	+		DZA65_RS18180	0.66	+0.2
3,919,117	+		DZA65_RS18180	0.66	+0.3
3,919,117	+		DZA65_RS18180	0.66	+0.1
3,919,117	+		DZA65_RS18180	0.66	+0.4
3,919,117	+		DZA65_RS18180	0.66	-0.7
3,919,117	+		DZA65_RS18180	0.66	+0.8
3,919,117	+		DZA65_RS18180	0.66	-0.4
3,919,117	+		DZA65_RS18180	0.66	+1.2
3,919,117	+		DZA65_RS18180	0.66	-0.8
3,919,117	+		DZA65_RS18180	0.66	+0.8
3,919,117	+		DZA65_RS18180	0.66	-0.2
3,919,117	+		DZA65_RS18180	0.66	+0.5
3,919,117	+		DZA65_RS18180	0.66	+1.0
3,919,117	+		DZA65_RS18180	0.66	+2.3
3,919,117	+		DZA65_RS18180	0.66	-1.2
3,919,118	-		DZA65_RS18180	0.66	-1.8
3,919,118	-		DZA65_RS18180	0.66	-2.0
3,919,118	-		DZA65_RS18180	0.66	+0.7
3,919,118	-		DZA65_RS18180	0.66	-0.1
3,919,118	-		DZA65_RS18180	0.66	-1.1
3,919,118	-		DZA65_RS18180	0.66	+1.1
3,919,118	-		DZA65_RS18180	0.66	+0.6
3,919,118	-		DZA65_RS18180	0.66	+0.8
3,919,126	+		DZA65_RS18180	0.67	+0.1
3,919,345	-		DZA65_RS18180	0.83	+0.8
3,919,390	+		DZA65_RS18180	0.86	-1.3
3,919,390	+		DZA65_RS18180	0.86	-0.5
3,919,390	+		DZA65_RS18180	0.86	+0.8
3,919,390	+		DZA65_RS18180	0.86	-1.0
3,919,390	+		DZA65_RS18180	0.86	+0.5
3,919,391	-		DZA65_RS18180	0.86	+0.3
3,919,391	-		DZA65_RS18180	0.86	+1.1
3,919,391	-		DZA65_RS18180	0.86	+0.9
3,919,391	-		DZA65_RS18180	0.86	+1.5
3,919,457	+				+0.3
3,919,471	+				+0.8
3,919,472	-				+0.8
3,919,472	-				-0.2
3,919,472	-				+0.6
3,919,472	-				+0.1
3,919,472	-				-0.6
3,919,514	-				+0.8
3,919,565	+				+0.2
3,919,565	+				+0.5
3,919,566	-				-0.4
3,919,606	+				+0.6
3,919,606	+				-0.7
3,919,606	+				-0.2
3,919,607	-				-0.2
3,919,608	+				-2.4
3,919,608	+				+0.4
3,919,608	+				-0.1
3,919,608	+				-0.1
3,919,608	+				+0.1
3,919,608	+				+1.0
3,919,609	-				+0.3
3,919,609	-				+0.2
3,919,624	+				+1.4
3,919,625	-				-1.5
3,919,625	-				-1.1
3,919,625	-				-0.2
3,919,689	+				+0.8
3,919,689	+				-0.5
3,919,689	+				+0.4
3,919,689	+				-0.4
3,919,689	+				-0.1
3,919,690	-				-0.8
3,919,690	-				-0.8
3,919,690	-				+0.6
3,919,690	-				-0.1
3,919,690	-				-0.9
3,919,690	-				+1.8
3,919,729	+				+0.6
3,919,730	-				+0.2
3,919,730	-				+0.8
3,919,730	-				+0.1
3,919,731	+		DZA65_RS18185	0.10	+0.3
3,919,731	+		DZA65_RS18185	0.10	-0.9
3,919,731	+		DZA65_RS18185	0.10	-0.2
3,919,732	-		DZA65_RS18185	0.10	-0.2
3,919,732	-		DZA65_RS18185	0.10	-0.6
3,919,906	+		DZA65_RS18185	0.23	+1.2
3,919,914	+		DZA65_RS18185	0.24	+0.2
3,919,914	+		DZA65_RS18185	0.24	-0.3
3,919,914	+		DZA65_RS18185	0.24	+0.2
3,919,914	+		DZA65_RS18185	0.24	+1.3
3,919,914	+		DZA65_RS18185	0.24	+0.4
3,919,914	+		DZA65_RS18185	0.24	+0.7
3,919,914	+		DZA65_RS18185	0.24	-1.0
3,919,914	+		DZA65_RS18185	0.24	-2.0
3,919,914	+		DZA65_RS18185	0.24	+0.1
3,919,915	-		DZA65_RS18185	0.24	-1.2
3,919,915	-		DZA65_RS18185	0.24	-1.5
3,919,915	-		DZA65_RS18185	0.24	+1.5
3,919,915	-		DZA65_RS18185	0.24	-2.8
3,919,915	-		DZA65_RS18185	0.24	+0.8
3,919,915	-		DZA65_RS18185	0.24	-1.4
3,919,915	-		DZA65_RS18185	0.24	+2.1
3,919,915	-		DZA65_RS18185	0.24	-2.0
3,919,915	-				+0.5
3,919,915	-		DZA65_RS18185	0.24	+2.1
3,919,918	+		DZA65_RS18185	0.24	-0.9
3,919,918	+		DZA65_RS18185	0.24	-0.3
3,919,918	+		DZA65_RS18185	0.24	+1.5
3,919,918	+		DZA65_RS18185	0.24	+1.7
3,919,919	-		DZA65_RS18185	0.24	+0.4
3,919,919	-		DZA65_RS18185	0.24	+0.2
3,919,948	+		DZA65_RS18185	0.26	-2.4
3,919,949	-		DZA65_RS18185	0.26	+1.9
3,919,949	-		DZA65_RS18185	0.26	+0.1
3,919,949	-		DZA65_RS18185	0.26	-0.1
3,919,969	+		DZA65_RS18185	0.28	-1.1
3,919,969	+		DZA65_RS18185	0.28	+0.5
3,919,970	-		DZA65_RS18185	0.28	+0.8
3,920,084	+		DZA65_RS18185	0.36	-0.5
3,920,085	-		DZA65_RS18185	0.36	-1.5
3,920,115	+		DZA65_RS18185	0.38	+0.3
3,920,115	+		DZA65_RS18185	0.38	+0.2
3,920,115	+		DZA65_RS18185	0.38	+0.4
3,920,115	+		DZA65_RS18185	0.38	-1.2
3,920,115	+		DZA65_RS18185	0.38	-0.6
3,920,116	-		DZA65_RS18185	0.39	-1.8
3,920,116	-		DZA65_RS18185	0.39	-1.1
3,920,116	-		DZA65_RS18185	0.39	-1.1
3,920,131	+		DZA65_RS18185	0.40	-1.0
3,920,131	+		DZA65_RS18185	0.40	-0.1
3,920,132	-		DZA65_RS18185	0.40	-1.5
3,920,134	+		DZA65_RS18185	0.40	+0.3
3,920,135	-		DZA65_RS18185	0.40	+1.1
3,920,135	-		DZA65_RS18185	0.40	-0.5
3,920,142	+		DZA65_RS18185	0.40	-1.5
3,920,142	+		DZA65_RS18185	0.40	-2.2
3,920,142	+		DZA65_RS18185	0.40	+2.8
3,920,143	-		DZA65_RS18185	0.41	+0.5
3,920,143	-		DZA65_RS18185	0.41	-1.2
3,920,143	-		DZA65_RS18185	0.41	-0.9
3,920,164	-		DZA65_RS18185	0.42	-0.8
3,920,175	+		DZA65_RS18185	0.43	-0.4
3,920,176	-		DZA65_RS18185	0.43	+1.8
3,920,176	-		DZA65_RS18185	0.43	-1.2
3,920,213	-		DZA65_RS18185	0.46	-0.3
3,920,213	-		DZA65_RS18185	0.46	-1.5
3,920,372	-		DZA65_RS18185	0.57	+0.4
3,920,455	+		DZA65_RS18185	0.64	-0.2
3,920,469	+		DZA65_RS18185	0.65	-2.2
3,920,488	+		DZA65_RS18185	0.66	-0.1
3,920,489	-		DZA65_RS18185	0.66	+0.6
3,920,489	-		DZA65_RS18185	0.66	+1.1