Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18095

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,893,088	+		DZA65_RS18090	0.77	-0.2
3,893,165	+		DZA65_RS18090	0.82	+0.5
3,893,166	-		DZA65_RS18090	0.82	+0.5
3,893,174	+		DZA65_RS18090	0.82	-0.0
3,893,174	+		DZA65_RS18090	0.82	-0.7
3,893,174	+		DZA65_RS18090	0.82	-0.5
3,893,182	-		DZA65_RS18090	0.83	-2.5
3,893,290	+		DZA65_RS18090	0.89	-0.8
3,893,293	+		DZA65_RS18090	0.89	-1.0
3,893,293	+		DZA65_RS18090	0.89	+0.2
3,893,294	-		DZA65_RS18090	0.89	-2.0
3,893,382	+				-1.2
3,893,383	-				-0.4
3,893,550	+				-0.2
3,893,551	-				+0.8
3,893,553	-				+0.4
3,893,569	+				+1.9
3,893,570	-				-1.0
3,893,570	-				-0.2
3,893,570	-				-0.4
3,893,581	+				-0.8
3,893,581	+				+1.6
3,893,582	-				-0.0
3,893,582	-				+0.3
3,893,586	+				-0.3
3,893,587	-				+0.1
3,893,587	-				-0.1
3,893,587	-				+0.8
3,893,587	-				-0.1
3,893,587	-				-0.0
3,893,588	+				+0.2
3,893,588	+				+0.9
3,893,588	+				+0.1
3,893,588	+				+0.5
3,893,588	+				+0.5
3,893,588	+				-0.8
3,893,588	+				+0.8
3,893,589	-				-1.5
3,893,589	-				-1.4
3,893,589	-				+0.9
3,893,589	-				+0.4
3,893,589	-				+1.8
3,893,589	-				+1.5
3,893,589	-				-2.4
3,893,589	-				+0.8
3,893,589	-				-0.2
3,893,589	-				-1.8
3,893,589	-				-2.0
3,893,589	-				+0.3
3,893,589	-				-0.5
3,893,589	-				-1.2
3,893,593	+				-1.4
3,893,594	-				+0.2
3,893,616	-				-0.6
3,893,616	-				-0.7
3,893,675	+				-2.4
3,893,704	+				-1.5
3,893,814	+				-0.2
3,893,814	+				-0.8
3,893,815	-				-0.8
3,893,815	-				-0.1
3,893,912	+				-1.7
3,893,913	-				-0.6
3,894,014	-				+0.1
3,894,038	+				-0.4
3,894,038	+				+0.3
3,894,038	+				+0.3
3,894,038	+				-1.5
3,894,038	+				+0.0
3,894,038	+				-0.5
3,894,038	+				+0.1
3,894,038	+				-0.4
3,894,039	-				+0.3
3,894,039	-				-0.5
3,894,039	-				-2.5
3,894,039	-				-0.5
3,894,039	-				-0.8
3,894,039	-				+0.2
3,894,039	-				-0.5
3,894,039	-				-0.2
3,894,075	+				+0.6
3,894,104	-				+0.6
3,894,104	-				-2.4
3,894,129	+				-1.1
3,894,130	-				+0.2
3,894,130	-				+2.5
3,894,130	-				+0.6
3,894,133	+				+0.4
3,894,185	+		DZA65_RS18095	0.11	-1.4
3,894,185	+		DZA65_RS18095	0.11	-1.4
3,894,186	-		DZA65_RS18095	0.11	-0.8
3,894,186	-		DZA65_RS18095	0.11	-2.0
3,894,187	+		DZA65_RS18095	0.11	+0.3
3,894,188	-		DZA65_RS18095	0.11	+1.0
3,894,188	-		DZA65_RS18095	0.11	+0.8
3,894,188	-		DZA65_RS18095	0.11	-0.4
3,894,188	-		DZA65_RS18095	0.11	+0.5
3,894,188	-		DZA65_RS18095	0.11	-0.2
3,894,212	+		DZA65_RS18095	0.13	+0.5
3,894,220	+		DZA65_RS18095	0.14	+0.4
3,894,224	+		DZA65_RS18095	0.14	-1.8
3,894,224	+		DZA65_RS18095	0.14	+1.4
3,894,225	-		DZA65_RS18095	0.14	+1.0
3,894,225	-		DZA65_RS18095	0.14	-1.8
3,894,232	+		DZA65_RS18095	0.15	-0.7
3,894,232	+		DZA65_RS18095	0.15	-0.7
3,894,233	-		DZA65_RS18095	0.15	-1.1
3,894,233	-		DZA65_RS18095	0.15	+0.3
3,894,290	+		DZA65_RS18095	0.20	+1.4
3,894,292	+		DZA65_RS18095	0.20	-0.5
3,894,308	+		DZA65_RS18095	0.21	-0.4
3,894,333	-		DZA65_RS18095	0.23	+0.6
3,894,351	+		DZA65_RS18095	0.25	-0.2
3,894,351	+		DZA65_RS18095	0.25	-0.9
3,894,352	-		DZA65_RS18095	0.25	-0.6
3,894,355	-		DZA65_RS18095	0.25	-1.7
3,894,355	-		DZA65_RS18095	0.25	+0.7
3,894,356	+		DZA65_RS18095	0.25	+0.4
3,894,357	-		DZA65_RS18095	0.25	+0.1
3,894,357	-		DZA65_RS18095	0.25	-0.3
3,894,417	+		DZA65_RS18095	0.30	-0.1
3,894,418	-		DZA65_RS18095	0.30	-1.0
3,894,420	+		DZA65_RS18095	0.30	-0.4
3,894,420	+		DZA65_RS18095	0.30	-0.5
3,894,421	-		DZA65_RS18095	0.31	-1.9
3,894,425	-		DZA65_RS18095	0.31	+0.7
3,894,425	-		DZA65_RS18095	0.31	-1.2
3,894,434	+		DZA65_RS18095	0.32	+0.0
3,894,474	+		DZA65_RS18095	0.35	+0.9
3,894,643	-		DZA65_RS18095	0.49	-2.4
3,894,684	-		DZA65_RS18095	0.52	+0.6
3,894,684	-		DZA65_RS18095	0.52	-1.5
3,894,684	-		DZA65_RS18095	0.52	+1.8
3,894,735	+		DZA65_RS18095	0.56	-0.2
3,894,735	+		DZA65_RS18095	0.56	-1.0
3,894,736	-		DZA65_RS18095	0.56	+0.2
3,894,737	+		DZA65_RS18095	0.56	-1.8
3,894,737	+		DZA65_RS18095	0.56	+0.7
3,894,737	+		DZA65_RS18095	0.56	+1.4
3,894,738	-		DZA65_RS18095	0.57	-0.4
3,894,738	-		DZA65_RS18095	0.57	+0.4
3,894,738	-		DZA65_RS18095	0.57	-1.0
3,894,738	-		DZA65_RS18095	0.57	+0.3
3,894,743	-		DZA65_RS18095	0.57	+1.1
3,894,773	+		DZA65_RS18095	0.59	-2.4
3,894,861	-		DZA65_RS18095	0.67	-0.1
3,894,924	+		DZA65_RS18095	0.72	+0.5
3,895,112	+		DZA65_RS18095	0.87	-1.9
3,895,113	-		DZA65_RS18095	0.87	+0.5
3,895,117	-		DZA65_RS18095	0.88	-0.8
3,895,146	+		DZA65_RS18095	0.90	-0.7
3,895,165	+				-1.2
3,895,203	-				-0.1
3,895,219	-				+0.7
3,895,222	+				+0.5
3,895,222	+				-2.0
3,895,223	-				+0.3
3,895,347	+				-0.5
3,895,348	-				+1.5
3,895,348	-				-0.2
3,895,348	-				-0.5
3,895,385	+		DZA65_RS18100	0.13	+0.8
3,895,385	+		DZA65_RS18100	0.13	+1.3
3,895,386	-		DZA65_RS18100	0.13	-2.4
3,895,394	-		DZA65_RS18100	0.14	-0.7
3,895,441	-		DZA65_RS18100	0.19	+0.0
3,895,451	-		DZA65_RS18100	0.20	-0.4
3,895,464	+		DZA65_RS18100	0.21	-1.8
3,895,464	+		DZA65_RS18100	0.21	+0.5
3,895,465	-		DZA65_RS18100	0.21	-0.1
3,895,465	-		DZA65_RS18100	0.21	-0.4
3,895,468	+		DZA65_RS18100	0.22	-1.5
3,895,476	+		DZA65_RS18100	0.23	-0.8
3,895,476	+		DZA65_RS18100	0.23	+0.2
3,895,476	+		DZA65_RS18100	0.23	-0.2
3,895,476	+		DZA65_RS18100	0.23	-2.5
3,895,476	+		DZA65_RS18100	0.23	-2.7
3,895,476	+		DZA65_RS18100	0.23	-1.0
3,895,476	+		DZA65_RS18100	0.23	-1.2
3,895,477	-		DZA65_RS18100	0.23	-1.5
3,895,477	-		DZA65_RS18100	0.23	+2.6
3,895,478	+		DZA65_RS18100	0.23	-1.0
3,895,479	-		DZA65_RS18100	0.23	-1.8
3,895,528	+		DZA65_RS18100	0.28	+1.6
3,895,529	-		DZA65_RS18100	0.28	+1.9
3,895,532	-		DZA65_RS18100	0.28	+2.6
3,895,582	+		DZA65_RS18100	0.33	+0.6
3,895,582	+		DZA65_RS18100	0.33	-0.4
3,895,583	-		DZA65_RS18100	0.34	-1.4
3,895,612	+		DZA65_RS18100	0.37	+1.0
3,895,612	+		DZA65_RS18100	0.37	-1.2
3,895,613	-		DZA65_RS18100	0.37	-1.3
3,895,613	-		DZA65_RS18100	0.37	+1.1
3,895,613	-		DZA65_RS18100	0.37	-0.2
3,895,614	+		DZA65_RS18100	0.37	-2.7
3,895,615	-		DZA65_RS18100	0.37	+0.4
3,895,764	+		DZA65_RS18100	0.52	-1.7
3,895,765	-		DZA65_RS18100	0.52	+1.1
3,895,793	-		DZA65_RS18100	0.55	-0.1
3,895,805	+		DZA65_RS18100	0.56	-1.0
3,895,828	+		DZA65_RS18100	0.59	-2.2
3,895,893	+		DZA65_RS18100	0.65	+0.3
3,895,893	+		DZA65_RS18100	0.65	+1.2
3,895,894	-		DZA65_RS18100	0.65	-1.8
3,895,894	-		DZA65_RS18100	0.65	+0.1
3,895,915	+		DZA65_RS18100	0.68	-1.9
3,895,916	-		DZA65_RS18100	0.68	-0.2
3,895,993	+		DZA65_RS18100	0.76	-0.8
3,895,994	-		DZA65_RS18100	0.76	-0.5
3,895,994	-		DZA65_RS18100	0.76	-1.3
3,895,994	-		DZA65_RS18100	0.76	+0.8
3,895,995	+		DZA65_RS18100	0.76	-0.5
3,895,995	+		DZA65_RS18100	0.76	+0.2
3,895,995	+		DZA65_RS18100	0.76	+1.5
3,895,995	+		DZA65_RS18100	0.76	+1.2
3,895,996	-		DZA65_RS18100	0.76	-1.2
3,895,996	-		DZA65_RS18100	0.76	+1.3
3,895,996	-		DZA65_RS18100	0.76	-1.1
3,896,082	+		DZA65_RS18100	0.85	-0.2
3,896,105	-		DZA65_RS18100	0.87	+0.8
3,896,174	+				-1.2
3,896,175	-				-0.7