Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17950

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,864,584	-		DZA65_RS17945	0.50	-0.2
3,864,584	-		DZA65_RS17945	0.50	+0.5
3,864,630	-		DZA65_RS17945	0.53	+0.8
3,864,658	+		DZA65_RS17945	0.55	-0.0
3,864,659	-		DZA65_RS17945	0.55	-0.5
3,864,659	-		DZA65_RS17945	0.55	+0.4
3,864,689	+		DZA65_RS17945	0.58	+1.5
3,864,689	+		DZA65_RS17945	0.58	-0.4
3,864,689	+		DZA65_RS17945	0.58	+1.0
3,864,690	-		DZA65_RS17945	0.58	+1.0
3,864,716	+		DZA65_RS17945	0.60	+0.4
3,864,717	-		DZA65_RS17945	0.60	-1.2
3,864,717	-		DZA65_RS17945	0.60	-0.4
3,864,737	+		DZA65_RS17945	0.61	-1.5
3,864,737	+		DZA65_RS17945	0.61	-2.0
3,864,737	+		DZA65_RS17945	0.61	+0.0
3,864,737	+		DZA65_RS17945	0.61	+0.1
3,864,737	+		DZA65_RS17945	0.61	-1.2
3,864,738	-		DZA65_RS17945	0.62	+0.1
3,864,738	-		DZA65_RS17945	0.62	-1.4
3,864,738	-		DZA65_RS17945	0.62	+2.6
3,864,738	-		DZA65_RS17945	0.62	-0.8
3,864,738	-		DZA65_RS17945	0.62	-0.5
3,864,738	-		DZA65_RS17945	0.62	+0.4
3,864,738	-		DZA65_RS17945	0.62	+0.4
3,864,738	-		DZA65_RS17945	0.62	+0.0
3,864,738	-		DZA65_RS17945	0.62	+0.1
3,864,738	-		DZA65_RS17945	0.62	+0.3
3,864,741	+		DZA65_RS17945	0.62	-0.2
3,864,742	-		DZA65_RS17945	0.62	-0.1
3,864,742	-		DZA65_RS17945	0.62	-1.5
3,864,756	+		DZA65_RS17945	0.63	+0.0
3,864,756	+		DZA65_RS17945	0.63	-0.5
3,864,756	+		DZA65_RS17945	0.63	+0.4
3,864,756	+		DZA65_RS17945	0.63	-1.0
3,864,756	+		DZA65_RS17945	0.63	+0.8
3,864,757	-		DZA65_RS17945	0.63	+0.1
3,864,757	-		DZA65_RS17945	0.63	-1.0
3,864,757	-		DZA65_RS17945	0.63	+1.7
3,864,757	-		DZA65_RS17945	0.63	+0.3
3,864,766	+		DZA65_RS17945	0.64	-0.3
3,864,767	-		DZA65_RS17945	0.64	-1.8
3,864,795	+		DZA65_RS17945	0.66	-0.1
3,864,795	+		DZA65_RS17945	0.66	+0.0
3,864,795	+		DZA65_RS17945	0.66	-1.2
3,864,795	+		DZA65_RS17945	0.66	-1.8
3,864,795	+		DZA65_RS17945	0.66	+0.1
3,864,795	+		DZA65_RS17945	0.66	-0.1
3,864,795	+		DZA65_RS17945	0.66	-0.5
3,864,795	+		DZA65_RS17945	0.66	+0.4
3,864,795	+		DZA65_RS17945	0.66	-1.5
3,864,796	-		DZA65_RS17945	0.66	-1.9
3,864,796	-		DZA65_RS17945	0.66	+0.4
3,864,796	-		DZA65_RS17945	0.66	-2.0
3,864,796	-		DZA65_RS17945	0.66	+0.4
3,864,796	-		DZA65_RS17945	0.66	+0.5
3,864,796	-		DZA65_RS17945	0.66	+0.3
3,864,796	-				-0.8
3,864,796	-		DZA65_RS17945	0.66	-0.5
3,864,796	-		DZA65_RS17945	0.66	-1.7
3,864,796	-		DZA65_RS17945	0.66	+1.8
3,864,813	+		DZA65_RS17945	0.67	-0.2
3,864,851	+		DZA65_RS17945	0.70	-0.8
3,864,851	+		DZA65_RS17945	0.70	+0.4
3,864,852	-		DZA65_RS17945	0.70	-0.9
3,864,852	-		DZA65_RS17945	0.70	+0.8
3,864,852	-		DZA65_RS17945	0.70	+1.0
3,864,852	-		DZA65_RS17945	0.70	+1.8
3,864,857	+		DZA65_RS17945	0.71	+0.4
3,864,857	+		DZA65_RS17945	0.71	+0.9
3,864,915	-		DZA65_RS17945	0.75	-2.3
3,864,934	+		DZA65_RS17945	0.77	-0.8
3,864,934	+		DZA65_RS17945	0.77	+0.2
3,864,934	+		DZA65_RS17945	0.77	+1.3
3,864,934	+		DZA65_RS17945	0.77	-0.5
3,864,934	+		DZA65_RS17945	0.77	+0.3
3,864,934	+		DZA65_RS17945	0.77	+1.5
3,864,934	+		DZA65_RS17945	0.77	-0.4
3,864,935	-		DZA65_RS17945	0.77	-1.1
3,864,935	-		DZA65_RS17945	0.77	-0.2
3,864,935	-		DZA65_RS17945	0.77	-1.3
3,864,935	-		DZA65_RS17945	0.77	-0.4
3,864,935	-		DZA65_RS17945	0.77	+0.9
3,864,935	-		DZA65_RS17945	0.77	-1.9
3,864,935	-		DZA65_RS17945	0.77	+0.2
3,864,935	-		DZA65_RS17945	0.77	-2.0
3,864,935	-		DZA65_RS17945	0.77	+0.2
3,864,969	+		DZA65_RS17945	0.79	-0.6
3,864,969	+		DZA65_RS17945	0.79	-2.0
3,864,969	+		DZA65_RS17945	0.79	-1.6
3,864,969	+		DZA65_RS17945	0.79	+0.5
3,864,969	+		DZA65_RS17945	0.79	+0.2
3,864,969	+		DZA65_RS17945	0.79	+0.4
3,864,974	-		DZA65_RS17945	0.80	-0.5
3,864,982	+		DZA65_RS17945	0.80	-2.0
3,864,982	+		DZA65_RS17945	0.80	-0.4
3,864,982	+		DZA65_RS17945	0.80	+1.0
3,864,982	+		DZA65_RS17945	0.80	+0.8
3,864,983	-		DZA65_RS17945	0.80	-1.8
3,864,984	+		DZA65_RS17945	0.80	+0.7
3,864,984	+				+1.4
3,864,985	-		DZA65_RS17945	0.81	+1.0
3,864,985	-		DZA65_RS17945	0.81	+0.5
3,865,034	+		DZA65_RS17945	0.84	-0.2
3,865,034	+		DZA65_RS17945	0.84	+2.1
3,865,067	-		DZA65_RS17945	0.87	-0.7
3,865,069	+		DZA65_RS17945	0.87	+0.5
3,865,070	-		DZA65_RS17945	0.87	-0.4
3,865,087	+		DZA65_RS17945	0.88	+1.5
3,865,099	-		DZA65_RS17945	0.89	-0.9
3,865,099	-		DZA65_RS17945	0.89	-1.2
3,865,117	-				-0.4
3,865,122	+				+0.5
3,865,177	+				+0.2
3,865,178	-				-0.2
3,865,192	+				+1.2
3,865,192	+				-0.9
3,865,192	+				+0.6
3,865,193	-				-0.2
3,865,193	-				-0.2
3,865,193	-				+0.8
3,865,193	-				-0.4
3,865,193	-				+0.2
3,865,193	-				-0.2
3,865,193	-				-0.1
3,865,196	+				+0.4
3,865,196	+				-1.0
3,865,196	+				-2.4
3,865,196	+				+0.2
3,865,196	+				-0.3
3,865,196	+				-0.5
3,865,196	+				-0.3
3,865,196	+				+1.3
3,865,196	+				-0.4
3,865,197	-				+1.6
3,865,197	-				+0.3
3,865,197	-				+1.7
3,865,224	-				-0.2
3,865,224	-				-0.5
3,865,224	-				-0.7
3,865,237	+				-0.5
3,865,237	+				-0.1
3,865,237	+				+1.2
3,865,237	+				-0.8
3,865,239	+				-0.2
3,865,239	+				-0.8
3,865,239	+				-0.6
3,865,239	+				-0.1
3,865,239	+				-0.4
3,865,239	+				-0.4
3,865,239	+				+0.4
3,865,240	-				-0.2
3,865,240	-				+0.2
3,865,240	-				-0.2
3,865,240	-				+0.8
3,865,240	-				+1.1
3,865,240	-				+0.1
3,865,240	-				+0.4
3,865,262	+				-1.1
3,865,262	+				-1.4
3,865,263	-				-0.8
3,865,263	-				-0.1
3,865,266	+				-1.5
3,865,266	+				-0.5
3,865,266	+				+2.1
3,865,266	+				-0.7
3,865,273	+				+1.8
3,865,273	+				-0.5
3,865,273	+				+0.1
3,865,273	+				-0.5
3,865,274	-				+0.2
3,865,274	-				+0.8
3,865,278	+				-1.8
3,865,278	+				-0.7
3,865,278	+				+2.4
3,865,281	-				-0.7
3,865,281	-				-1.0
3,865,281	-				+1.0
3,865,287	+				-1.3
3,865,287	+				+0.3
3,865,287	+				-0.5
3,865,287	+				+0.0
3,865,287	+				+0.4
3,865,288	-				+0.2
3,865,288	-				+0.3
3,865,288	-				-0.2
3,865,292	+				-0.2
3,865,293	-				-0.6
3,865,293	-				+0.2
3,865,323	-				-1.4
3,865,335	+				-1.2
3,865,335	+				-2.2
3,865,335	+				+2.8
3,865,336	-				-0.2
3,865,336	-				+0.3
3,865,339	+				-0.5
3,865,339	+				-0.2
3,865,340	-				+1.2
3,865,340	-				+0.8
3,865,340	-				+1.8
3,865,343	+				+1.0
3,865,343	+				-1.1
3,865,343	+				-1.4
3,865,343	+				+1.9
3,865,343	+				+1.6
3,865,362	+				+0.2
3,865,362	+				+0.5
3,865,362	+				-0.5
3,865,362	+				+0.4
3,865,363	-				-0.0
3,865,372	+				+1.4
3,865,372	+				+0.2
3,865,373	-				+0.8
3,865,373	-				+0.2
3,865,386	-				+1.6
3,865,419	+				+1.5
3,865,419	+				-0.6
3,865,420	-				-0.8
3,865,430	+				+1.4
3,865,431	-				-0.8
3,865,431	-				+0.8
3,865,431	-				-0.9
3,865,432	+				+1.7
3,865,432	+				+0.2
3,865,433	-				-0.5
3,865,555	-		DZA65_RS17950	0.13	-0.1
3,865,581	-		DZA65_RS17950	0.35	-1.9
3,865,581	-		DZA65_RS17950	0.35	-1.0
3,865,643	+		DZA65_RS17950	0.89	+0.8
3,865,643	+		DZA65_RS17950	0.89	-2.1
3,865,685	+				-1.8
3,865,686	-				+1.3
3,865,690	-				+1.0
3,865,690	-				+0.4
3,865,690	-				-0.3
3,865,753	+		DZA65_RS17955	0.72	-1.5
3,865,803	-		DZA65_RS17960	0.13	-0.8