Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17795

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,829,534	+		DZA65_RS17785	0.82	-1.1
3,829,534	+		DZA65_RS17785	0.82	+1.2
3,829,534	+		DZA65_RS17785	0.82	-0.2
3,829,535	-		DZA65_RS17785	0.82	-1.8
3,829,535	-		DZA65_RS17785	0.82	+0.6
3,829,535	-		DZA65_RS17785	0.82	-1.0
3,829,535	-		DZA65_RS17785	0.82	+0.3
3,829,535	-		DZA65_RS17785	0.82	-0.6
3,829,535	-		DZA65_RS17785	0.82	+0.6
3,829,617	-		DZA65_RS17785	0.90	-1.5
3,829,662	+				-0.1
3,829,663	-				-0.4
3,829,663	-				+0.8
3,829,663	-				+1.5
3,829,663	-				-0.2
3,829,663	-				+1.1
3,829,663	-				+2.2
3,829,676	+				-0.2
3,829,677	-				+1.1
3,829,724	+				-0.9
3,829,724	+				-0.2
3,829,724	+				-0.2
3,829,724	+				-0.6
3,829,724	+				-0.8
3,829,724	+				-0.7
3,829,725	-				+0.5
3,829,736	-				+0.1
3,829,750	+				+0.2
3,829,750	+				+1.1
3,829,750	+				+0.7
3,829,750	+				+0.3
3,829,750	+				+1.2
3,829,750	+				+0.7
3,829,750	+				-1.1
3,829,751	-				-1.4
3,829,751	-				-1.1
3,829,810	+		DZA65_RS17790	0.11	+1.2
3,830,031	+		DZA65_RS17790	0.40	+0.1
3,830,032	-		DZA65_RS17790	0.40	+0.1
3,830,032	-		DZA65_RS17790	0.40	+2.1
3,830,032	-		DZA65_RS17790	0.40	+0.6
3,830,032	-		DZA65_RS17790	0.40	+0.4
3,830,037	+		DZA65_RS17790	0.41	-1.6
3,830,038	-		DZA65_RS17790	0.41	-0.6
3,830,079	+		DZA65_RS17790	0.46	+0.0
3,830,079	+		DZA65_RS17790	0.46	+0.8
3,830,079	+		DZA65_RS17790	0.46	+1.1
3,830,079	+		DZA65_RS17790	0.46	-0.1
3,830,079	+		DZA65_RS17790	0.46	-1.2
3,830,079	+		DZA65_RS17790	0.46	+0.1
3,830,079	+		DZA65_RS17790	0.46	-0.2
3,830,079	+		DZA65_RS17790	0.46	-0.7
3,830,080	-		DZA65_RS17790	0.46	+0.1
3,830,080	-		DZA65_RS17790	0.46	+1.7
3,830,080	-		DZA65_RS17790	0.46	-2.1
3,830,080	-		DZA65_RS17790	0.46	+0.4
3,830,082	+		DZA65_RS17790	0.46	-0.8
3,830,082	+		DZA65_RS17790	0.46	+1.0
3,830,082	+		DZA65_RS17790	0.46	-1.1
3,830,083	-		DZA65_RS17790	0.47	+0.0
3,830,083	-		DZA65_RS17790	0.47	-0.5
3,830,129	+		DZA65_RS17790	0.53	-0.4
3,830,130	-		DZA65_RS17790	0.53	+0.3
3,830,149	-		DZA65_RS17790	0.55	-0.4
3,830,149	-		DZA65_RS17790	0.55	-1.2
3,830,190	+		DZA65_RS17790	0.61	+0.6
3,830,191	-		DZA65_RS17790	0.61	-1.6
3,830,191	-		DZA65_RS17790	0.61	+0.9
3,830,205	+		DZA65_RS17790	0.62	+0.4
3,830,205	+		DZA65_RS17790	0.62	+0.5
3,830,206	-		DZA65_RS17790	0.63	+0.5
3,830,206	-		DZA65_RS17790	0.63	-0.2
3,830,206	-		DZA65_RS17790	0.63	-0.2
3,830,283	+		DZA65_RS17790	0.73	-0.8
3,830,283	+		DZA65_RS17790	0.73	+0.5
3,830,283	+		DZA65_RS17790	0.73	+0.4
3,830,283	+		DZA65_RS17790	0.73	+0.6
3,830,283	+		DZA65_RS17790	0.73	-0.1
3,830,283	+		DZA65_RS17790	0.73	+0.3
3,830,283	+		DZA65_RS17790	0.73	-0.4
3,830,283	+		DZA65_RS17790	0.73	-1.2
3,830,283	+		DZA65_RS17790	0.73	+0.4
3,830,283	+		DZA65_RS17790	0.73	+0.2
3,830,284	-		DZA65_RS17790	0.73	-0.1
3,830,284	-		DZA65_RS17790	0.73	+0.4
3,830,284	-		DZA65_RS17790	0.73	+0.3
3,830,284	-		DZA65_RS17790	0.73	-1.2
3,830,284	-		DZA65_RS17790	0.73	-1.6
3,830,284	-		DZA65_RS17790	0.73	-0.7
3,830,284	-		DZA65_RS17790	0.73	+0.0
3,830,284	-		DZA65_RS17790	0.73	+0.6
3,830,442	+				-1.1
3,830,442	+				-0.1
3,830,442	+				-0.1
3,830,490	+				-0.8
3,830,490	+				+0.8
3,830,490	+				-0.4
3,830,491	-				-0.2
3,830,491	-				-0.8
3,830,491	-				-1.8
3,830,491	-				+1.3
3,830,491	-				-0.2
3,830,526	+				-0.4
3,830,626	+				-1.8
3,830,627	-				+1.4
3,830,778	+		DZA65_RS17795	0.20	+0.0
3,830,779	-		DZA65_RS17795	0.21	-2.4
3,830,781	+		DZA65_RS17795	0.21	-0.4
3,830,781	+		DZA65_RS17795	0.21	+0.4
3,830,781	+		DZA65_RS17795	0.21	-1.1
3,830,782	-		DZA65_RS17795	0.21	-1.6
3,830,970	+		DZA65_RS17795	0.36	-1.0
3,831,091	+		DZA65_RS17795	0.45	+0.4
3,831,091	+		DZA65_RS17795	0.45	+1.3
3,831,091	+		DZA65_RS17795	0.45	-2.4
3,831,091	+		DZA65_RS17795	0.45	+1.5
3,831,091	+		DZA65_RS17795	0.45	-1.6
3,831,091	+		DZA65_RS17795	0.45	+0.4
3,831,092	-		DZA65_RS17795	0.45	+2.1
3,831,175	+		DZA65_RS17795	0.52	-0.8
3,831,175	+		DZA65_RS17795	0.52	-0.5
3,831,175	+		DZA65_RS17795	0.52	-0.2
3,831,189	+		DZA65_RS17795	0.53	+0.8
3,831,189	+		DZA65_RS17795	0.53	-0.7
3,831,190	-		DZA65_RS17795	0.53	-0.5
3,831,413	+		DZA65_RS17795	0.71	-1.6
3,831,413	+				+1.3
3,831,413	+		DZA65_RS17795	0.71	+0.2
3,831,414	-		DZA65_RS17795	0.71	+2.1
3,831,414	-		DZA65_RS17795	0.71	-0.2
3,831,414	-				-1.6
3,831,414	-		DZA65_RS17795	0.71	+0.5
3,831,414	-		DZA65_RS17795	0.71	+0.8
3,831,553	-		DZA65_RS17795	0.82	+0.8
3,831,565	+		DZA65_RS17795	0.83	-0.2
3,831,565	+		DZA65_RS17795	0.83	-1.6
3,831,566	-		DZA65_RS17795	0.83	-0.7
3,831,566	-		DZA65_RS17795	0.83	-0.7
3,831,566	-		DZA65_RS17795	0.83	-0.0
3,831,569	-		DZA65_RS17795	0.83	-0.8
3,831,657	+		DZA65_RS17795	0.90	+0.2
3,831,658	-				-2.4
3,831,658	-				-0.7
3,831,658	-				+0.3
3,831,658	-				+0.4
3,831,806	+				-0.6
3,831,806	+				-1.0
3,831,806	+				-1.6
3,831,806	+				-0.1
3,831,806	+				-0.8
3,831,806	+				+0.6
3,831,806	+				+0.8
3,831,806	+				+0.5
3,831,807	-				+0.2
3,831,807	-				-2.1
3,831,807	-				-0.5
3,831,807	-				-1.6
3,831,920	+		DZA65_RS17800	0.11	+0.3
3,831,920	+		DZA65_RS17800	0.11	+0.4
3,831,921	-		DZA65_RS17800	0.11	+0.3
3,831,921	-		DZA65_RS17800	0.11	-1.2
3,832,085	+		DZA65_RS17800	0.24	+0.3
3,832,086	-		DZA65_RS17800	0.24	-1.2
3,832,153	-		DZA65_RS17800	0.30	+1.4
3,832,180	-		DZA65_RS17800	0.32	+0.2
3,832,180	-		DZA65_RS17800	0.32	-2.2
3,832,284	-		DZA65_RS17800	0.40	+0.8
3,832,284	-		DZA65_RS17800	0.40	+0.8
3,832,284	-		DZA65_RS17800	0.40	+0.8
3,832,292	+		DZA65_RS17800	0.41	-0.8
3,832,292	+		DZA65_RS17800	0.41	+3.1
3,832,292	+		DZA65_RS17800	0.41	+1.0
3,832,292	+		DZA65_RS17800	0.41	-1.4
3,832,293	-		DZA65_RS17800	0.41	-0.2
3,832,345	+		DZA65_RS17800	0.45	-0.5
3,832,345	+		DZA65_RS17800	0.45	-0.3
3,832,353	+		DZA65_RS17800	0.46	+0.2
3,832,353	+		DZA65_RS17800	0.46	+0.2
3,832,354	-		DZA65_RS17800	0.46	+0.4
3,832,354	-		DZA65_RS17800	0.46	+1.8
3,832,354	-		DZA65_RS17800	0.46	-0.2
3,832,354	-		DZA65_RS17800	0.46	-3.1
3,832,354	-		DZA65_RS17800	0.46	+0.2
3,832,377	+		DZA65_RS17800	0.48	-1.2
3,832,377	+				+0.2
3,832,378	-		DZA65_RS17800	0.48	-0.5
3,832,378	-		DZA65_RS17800	0.48	+1.2
3,832,509	+		DZA65_RS17800	0.58	-0.4
3,832,510	-		DZA65_RS17800	0.59	-0.8
3,832,511	+		DZA65_RS17800	0.59	-0.7
3,832,512	-		DZA65_RS17800	0.59	-1.7
3,832,512	-		DZA65_RS17800	0.59	-0.2
3,832,512	-		DZA65_RS17800	0.59	-2.1
3,832,539	+		DZA65_RS17800	0.61	+1.8
3,832,539	+		DZA65_RS17800	0.61	-2.6
3,832,539	+		DZA65_RS17800	0.61	-0.1
3,832,540	-		DZA65_RS17800	0.61	+0.9
3,832,636	+		DZA65_RS17800	0.69	+0.0
3,832,636	+		DZA65_RS17800	0.69	-0.9
3,832,636	+		DZA65_RS17800	0.69	-0.5
3,832,637	-		DZA65_RS17800	0.69	+0.8
3,832,637	-		DZA65_RS17800	0.69	-0.6
3,832,637	-		DZA65_RS17800	0.69	-0.2
3,832,637	-		DZA65_RS17800	0.69	+0.4
3,832,637	-		DZA65_RS17800	0.69	-0.4
3,832,637	-		DZA65_RS17800	0.69	+2.0
3,832,637	-		DZA65_RS17800	0.69	+0.9
3,832,637	-		DZA65_RS17800	0.69	-0.2
3,832,637	-		DZA65_RS17800	0.69	-0.3