Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17680

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,806,650	-				+0.1
3,806,650	-				-0.3
3,806,650	-				-1.3
3,806,659	-				-0.8
3,806,720	-				-0.2
3,806,722	+				+1.3
3,806,723	-				+0.4
3,806,723	-				-1.4
3,806,764	+		DZA65_RS17675	0.16	-3.2
3,806,764	+		DZA65_RS17675	0.16	+0.5
3,806,764	+		DZA65_RS17675	0.16	-0.8
3,806,764	+		DZA65_RS17675	0.16	+0.4
3,806,765	-		DZA65_RS17675	0.16	+1.5
3,806,765	-		DZA65_RS17675	0.16	+0.2
3,806,766	+		DZA65_RS17675	0.16	+0.7
3,806,766	+		DZA65_RS17675	0.16	-0.3
3,806,766	+		DZA65_RS17675	0.16	+2.7
3,806,788	+		DZA65_RS17675	0.20	+0.3
3,806,788	+		DZA65_RS17675	0.20	+0.4
3,806,788	+		DZA65_RS17675	0.20	-0.3
3,806,788	+		DZA65_RS17675	0.20	+0.3
3,806,789	-		DZA65_RS17675	0.20	+0.7
3,806,789	-		DZA65_RS17675	0.20	-1.3
3,806,789	-		DZA65_RS17675	0.20	+0.7
3,806,792	+		DZA65_RS17675	0.21	+2.1
3,806,792	+		DZA65_RS17675	0.21	-1.6
3,806,792	+		DZA65_RS17675	0.21	-0.6
3,806,792	+		DZA65_RS17675	0.21	-1.0
3,806,793	-		DZA65_RS17675	0.21	+0.1
3,806,793	-		DZA65_RS17675	0.21	-0.7
3,806,793	-		DZA65_RS17675	0.21	+0.5
3,806,793	-				+0.7
3,806,793	-		DZA65_RS17675	0.21	+1.5
3,806,793	-		DZA65_RS17675	0.21	+0.7
3,806,795	+		DZA65_RS17675	0.21	-0.1
3,806,795	+		DZA65_RS17675	0.21	+0.4
3,806,795	+		DZA65_RS17675	0.21	+1.2
3,806,795	+		DZA65_RS17675	0.21	-1.2
3,806,796	-		DZA65_RS17675	0.21	+1.0
3,806,802	+		DZA65_RS17675	0.22	+0.5
3,806,802	+		DZA65_RS17675	0.22	-0.1
3,806,826	+		DZA65_RS17675	0.26	+0.4
3,806,826	+		DZA65_RS17675	0.26	-0.3
3,806,826	+		DZA65_RS17675	0.26	-2.3
3,806,826	+		DZA65_RS17675	0.26	+1.3
3,806,826	+		DZA65_RS17675	0.26	-0.3
3,806,827	-		DZA65_RS17675	0.27	-1.7
3,806,859	+		DZA65_RS17675	0.32	+0.1
3,806,865	-		DZA65_RS17675	0.33	-0.5
3,806,899	-		DZA65_RS17675	0.39	-1.0
3,806,920	+		DZA65_RS17675	0.43	-0.3
3,806,920	+		DZA65_RS17675	0.43	+0.7
3,806,921	-		DZA65_RS17675	0.43	+0.4
3,806,985	-		DZA65_RS17675	0.54	-0.8
3,806,992	+		DZA65_RS17675	0.55	+0.5
3,806,993	-		DZA65_RS17675	0.55	-1.6
3,807,029	-		DZA65_RS17675	0.61	-1.4
3,807,029	-		DZA65_RS17675	0.61	+1.2
3,807,045	+		DZA65_RS17675	0.64	+0.1
3,807,051	+		DZA65_RS17675	0.65	-0.8
3,807,052	-		DZA65_RS17675	0.65	-1.0
3,807,052	-		DZA65_RS17675	0.65	+0.1
3,807,052	-		DZA65_RS17675	0.65	-0.6
3,807,052	-		DZA65_RS17675	0.65	-0.3
3,807,091	+		DZA65_RS17675	0.72	+0.7
3,807,092	-		DZA65_RS17675	0.72	-1.1
3,807,092	-		DZA65_RS17675	0.72	-1.1
3,807,100	-		DZA65_RS17675	0.73	-0.4
3,807,100	-		DZA65_RS17675	0.73	+0.1
3,807,100	-		DZA65_RS17675	0.73	-0.6
3,807,114	+		DZA65_RS17675	0.76	-1.6
3,807,114	+		DZA65_RS17675	0.76	+0.9
3,807,115	-		DZA65_RS17675	0.76	-0.3
3,807,190	-		DZA65_RS17675	0.89	-2.4
3,807,190	-		DZA65_RS17675	0.89	-1.1
3,807,226	+				+1.2
3,807,227	-				+0.4
3,807,227	-				+0.0
3,807,269	-				-2.0
3,807,269	-				+0.5
3,807,269	-				+0.7
3,807,379	+				+0.0
3,807,379	+				+0.2
3,807,379	+				+0.3
3,807,380	-				+0.0
3,807,380	-				-0.2
3,807,380	-				+0.3
3,807,380	-				+0.4
3,807,380	-				+0.5
3,807,380	-				+1.0
3,807,381	+				-1.1
3,807,381	+				-1.3
3,807,381	+				+2.0
3,807,381	+				+1.0
3,807,381	+				-0.3
3,807,381	+				+0.2
3,807,381	+				-0.8
3,807,381	+				-0.6
3,807,381	+				+0.7
3,807,382	-				-0.7
3,807,382	-				-1.6
3,807,382	-				+0.1
3,807,382	-				+0.7
3,807,382	-				+0.5
3,807,382	-				-0.8
3,807,382	-				+0.3
3,807,382	-				-1.0
3,807,382	-				-0.3
3,807,390	+				+1.0
3,807,390	+				+0.0
3,807,390	+				+0.2
3,807,390	+				+0.4
3,807,391	-				+1.0
3,807,391	-				-1.3
3,807,391	-				-1.0
3,807,391	-				-1.3
3,807,423	+				+0.5
3,807,423	+				+0.4
3,807,423	+				-0.7
3,807,436	+		DZA65_RS17680	0.11	-1.1
3,807,436	+		DZA65_RS17680	0.11	+0.4
3,807,436	+		DZA65_RS17680	0.11	-1.6
3,807,436	+		DZA65_RS17680	0.11	+0.4
3,807,437	-		DZA65_RS17680	0.11	-0.4
3,807,437	-		DZA65_RS17680	0.11	-0.7
3,807,437	-		DZA65_RS17680	0.11	-1.3
3,807,437	-		DZA65_RS17680	0.11	-0.3
3,807,438	+		DZA65_RS17680	0.11	+0.9
3,807,438	+		DZA65_RS17680	0.11	-0.7
3,807,438	+		DZA65_RS17680	0.11	+1.1
3,807,438	+		DZA65_RS17680	0.11	+0.4
3,807,438	+		DZA65_RS17680	0.11	+3.0
3,807,438	+		DZA65_RS17680	0.11	+0.2
3,807,438	+		DZA65_RS17680	0.11	+1.1
3,807,438	+		DZA65_RS17680	0.11	-0.4
3,807,438	+		DZA65_RS17680	0.11	+0.3
3,807,438	+		DZA65_RS17680	0.11	+0.7
3,807,438	+		DZA65_RS17680	0.11	+2.3
3,807,438	+		DZA65_RS17680	0.11	+0.7
3,807,438	+		DZA65_RS17680	0.11	+0.5
3,807,438	+		DZA65_RS17680	0.11	-1.8
3,807,438	+		DZA65_RS17680	0.11	+0.5
3,807,438	+		DZA65_RS17680	0.11	-1.0
3,807,438	+		DZA65_RS17680	0.11	+0.0
3,807,439	-		DZA65_RS17680	0.11	-0.3
3,807,439	-		DZA65_RS17680	0.11	-0.8
3,807,439	-		DZA65_RS17680	0.11	-0.8
3,807,439	-		DZA65_RS17680	0.11	+1.5
3,807,439	-		DZA65_RS17680	0.11	+0.6
3,807,439	-		DZA65_RS17680	0.11	+1.4
3,807,439	-		DZA65_RS17680	0.11	+0.9
3,807,439	-		DZA65_RS17680	0.11	+1.3
3,807,439	-		DZA65_RS17680	0.11	+0.6
3,807,439	-		DZA65_RS17680	0.11	+0.5
3,807,460	+		DZA65_RS17680	0.13	+0.9
3,807,501	+		DZA65_RS17680	0.17	+0.2
3,807,501	+		DZA65_RS17680	0.17	-1.3
3,807,502	-		DZA65_RS17680	0.17	-2.6
3,807,502	-		DZA65_RS17680	0.17	+2.3
3,807,574	+		DZA65_RS17680	0.24	+0.7
3,807,593	-		DZA65_RS17680	0.25	+1.3
3,807,593	-		DZA65_RS17680	0.25	+0.3
3,807,593	-		DZA65_RS17680	0.25	+0.7
3,807,641	+		DZA65_RS17680	0.30	-1.8
3,807,641	+		DZA65_RS17680	0.30	-0.3
3,807,641	+		DZA65_RS17680	0.30	+2.7
3,807,641	+		DZA65_RS17680	0.30	+0.1
3,807,641	+		DZA65_RS17680	0.30	+0.0
3,807,641	+		DZA65_RS17680	0.30	-2.4
3,807,641	+		DZA65_RS17680	0.30	-2.0
3,807,641	+		DZA65_RS17680	0.30	+0.2
3,807,641	+		DZA65_RS17680	0.30	-0.1
3,807,641	+		DZA65_RS17680	0.30	-1.0
3,807,642	-		DZA65_RS17680	0.30	+0.7
3,807,642	-		DZA65_RS17680	0.30	-0.1
3,807,685	+		DZA65_RS17680	0.34	-2.1
3,807,685	+		DZA65_RS17680	0.34	+0.1
3,807,776	+		DZA65_RS17680	0.42	-0.2
3,807,777	-		DZA65_RS17680	0.43	-1.8
3,807,777	-		DZA65_RS17680	0.43	+0.4
3,807,825	-		DZA65_RS17680	0.47	+1.2
3,807,825	-		DZA65_RS17680	0.47	-0.6
3,807,825	-		DZA65_RS17680	0.47	+0.0
3,807,870	+		DZA65_RS17680	0.51	+0.7
3,807,870	+		DZA65_RS17680	0.51	-2.6
3,807,871	-		DZA65_RS17680	0.51	-0.5
3,807,871	-		DZA65_RS17680	0.51	-0.1
3,807,871	-		DZA65_RS17680	0.51	+1.3
3,807,871	-		DZA65_RS17680	0.51	-0.8
3,807,871	-		DZA65_RS17680	0.51	-1.3
3,807,977	-		DZA65_RS17680	0.61	+1.3
3,807,978	+		DZA65_RS17680	0.61	+0.4
3,807,978	+		DZA65_RS17680	0.61	-2.7
3,807,978	+		DZA65_RS17680	0.61	-1.4
3,807,978	+		DZA65_RS17680	0.61	-0.2
3,807,979	-		DZA65_RS17680	0.61	-1.6
3,807,979	-		DZA65_RS17680	0.61	-0.5
3,807,979	-		DZA65_RS17680	0.61	-1.8
3,807,979	-		DZA65_RS17680	0.61	+2.6
3,807,979	-		DZA65_RS17680	0.61	+0.5
3,808,105	+		DZA65_RS17680	0.73	+0.5
3,808,105	+		DZA65_RS17680	0.73	-2.6
3,808,132	+		DZA65_RS17680	0.76	-0.8
3,808,132	+		DZA65_RS17680	0.76	-0.7
3,808,135	-		DZA65_RS17680	0.76	+1.0
3,808,150	+		DZA65_RS17680	0.77	+0.7
3,808,151	-		DZA65_RS17680	0.77	+0.4
3,808,180	-		DZA65_RS17680	0.80	-0.5
3,808,248	-		DZA65_RS17680	0.86	+0.5
3,808,368	+				+0.2
3,808,369	-				-0.3
3,808,369	-				-0.8
3,808,369	-				-0.6
3,808,369	-				+0.7
3,808,370	+				-0.4
3,808,370	+				+1.2
3,808,370	+				+1.7
3,808,370	+				-2.0
3,808,370	+				+1.4
3,808,371	-				+1.1
3,808,371	-				+0.5
3,808,371	-				-2.1
3,808,371	-				+0.6
3,808,386	+				+0.0
3,808,387	-				+2.1
3,808,407	-				+0.7
3,808,444	+				-0.2
3,808,444	+				+0.0
3,808,444	+				+1.2
3,808,444	+				+0.4
3,808,444	+				+0.7
3,808,444	+				-0.8
3,808,445	-				-0.1
3,808,445	-				+0.7
3,808,445	-				-0.3
3,808,446	+				+0.7
3,808,446	+				+1.7
3,808,447	-				+0.3
3,808,447	-				-1.3
3,808,447	-				+1.3
3,808,454	+				+0.8
3,808,455	-				+0.4
3,808,466	+				-0.8
3,808,467	-				+0.6
3,808,469	+				-1.3
3,808,476	-				+3.3
3,808,487	+				-1.7
3,808,487	+				-0.3
3,808,487	+				+2.6
3,808,487	+				+0.2
3,808,487	+				-0.5
3,808,488	-				-0.1
3,808,488	-				+0.1
3,808,488	-				-0.6
3,808,488	-				-0.5
3,808,503	+		DZA65_RS17685	0.16	+2.3
3,808,504	-		DZA65_RS17685	0.17	+0.6
3,808,516	+		DZA65_RS17685	0.33	-0.7
3,808,516	+		DZA65_RS17685	0.33	-0.2
3,808,530	+		DZA65_RS17685	0.51	-1.3
3,808,547	-		DZA65_RS17685	0.74	-1.3
3,808,547	-		DZA65_RS17685	0.74	-0.6
3,808,558	+		DZA65_RS17685	0.88	+1.2
3,808,558	+		DZA65_RS17685	0.88	+0.9
3,808,558	+		DZA65_RS17685	0.88	+1.5
3,808,558	+		DZA65_RS17685	0.88	-0.8
3,808,558	+		DZA65_RS17685	0.88	+0.2
3,808,558	+		DZA65_RS17685	0.88	-1.1
3,808,558	+		DZA65_RS17685	0.88	+0.9
3,808,558	+		DZA65_RS17685	0.88	-0.8
3,808,559	-				-1.3
3,808,559	-				+0.4
3,808,559	-				-1.5
3,808,559	-				+0.4
3,808,559	-				-1.8
3,808,559	-				-1.4
3,808,559	-				-0.6
3,808,559	-				-0.3
3,808,560	+				-1.6
3,808,617	-				-0.7
3,808,619	+				-1.0
3,808,619	+				+0.7
3,808,620	-				+1.1
3,808,620	-				+1.7
3,808,620	-				+1.7
3,808,651	+				+1.7
3,808,651	+				+0.3
3,808,651	+				+0.7
3,808,651	+				+0.7
3,808,652	-				-1.0
3,808,762	-				+0.3
3,808,762	-				-1.3
3,808,858	+		DZA65_RS17690	0.11	-0.8
3,808,881	+		DZA65_RS17690	0.13	-0.3
3,808,881	+		DZA65_RS17690	0.13	-2.1
3,808,881	+		DZA65_RS17690	0.13	+0.4
3,808,881	+		DZA65_RS17690	0.13	-1.2
3,808,882	-		DZA65_RS17690	0.13	-0.3
3,808,928	+		DZA65_RS17690	0.17	+1.7
3,809,000	-		DZA65_RS17690	0.22	+0.7
3,809,000	-		DZA65_RS17690	0.22	-0.0
3,809,000	-		DZA65_RS17690	0.22	+0.2
3,809,050	-		DZA65_RS17690	0.26	-0.0
3,809,050	-		DZA65_RS17690	0.26	-0.3
3,809,102	+		DZA65_RS17690	0.30	-0.4
3,809,147	-		DZA65_RS17690	0.34	+0.1
3,809,292	+		DZA65_RS17690	0.46	-3.2
3,809,292	+		DZA65_RS17690	0.46	+0.3
3,809,292	+		DZA65_RS17690	0.46	+0.7
3,809,292	+				+2.3
3,809,292	+		DZA65_RS17690	0.46	-0.3
3,809,292	+		DZA65_RS17690	0.46	-0.0
3,809,292	+		DZA65_RS17690	0.46	-0.3
3,809,292	+		DZA65_RS17690	0.46	-0.7
3,809,292	+		DZA65_RS17690	0.46	+0.2
3,809,292	+		DZA65_RS17690	0.46	-1.6
3,809,292	+		DZA65_RS17690	0.46	-0.5
3,809,292	+		DZA65_RS17690	0.46	+1.2
3,809,292	+		DZA65_RS17690	0.46	+0.1
3,809,292	+		DZA65_RS17690	0.46	+1.0
3,809,292	+		DZA65_RS17690	0.46	+0.2
3,809,292	+		DZA65_RS17690	0.46	+0.2
3,809,293	-		DZA65_RS17690	0.46	+0.4
3,809,293	-		DZA65_RS17690	0.46	+0.4
3,809,293	-		DZA65_RS17690	0.46	-2.1
3,809,293	-		DZA65_RS17690	0.46	+2.3
3,809,293	-		DZA65_RS17690	0.46	+1.0
3,809,293	-		DZA65_RS17690	0.46	+1.0
3,809,293	-		DZA65_RS17690	0.46	+1.7
3,809,293	-		DZA65_RS17690	0.46	-0.5
3,809,293	-		DZA65_RS17690	0.46	+0.3
3,809,293	-		DZA65_RS17690	0.46	+1.3
3,809,293	-		DZA65_RS17690	0.46	-2.4
3,809,293	-		DZA65_RS17690	0.46	-1.1
3,809,293	-		DZA65_RS17690	0.46	+0.4
3,809,293	-		DZA65_RS17690	0.46	+0.6
3,809,293	-		DZA65_RS17690	0.46	-0.1
3,809,293	-		DZA65_RS17690	0.46	-2.1
3,809,296	+		DZA65_RS17690	0.46	+0.1
3,809,296	+		DZA65_RS17690	0.46	-0.3
3,809,297	-		DZA65_RS17690	0.46	+2.3
3,809,297	-		DZA65_RS17690	0.46	+1.2
3,809,297	-		DZA65_RS17690	0.46	-0.6
3,809,297	-		DZA65_RS17690	0.46	-0.1
3,809,297	-		DZA65_RS17690	0.46	-0.6
3,809,297	-		DZA65_RS17690	0.46	+0.7
3,809,297	-		DZA65_RS17690	0.46	+0.4
3,809,297	-		DZA65_RS17690	0.46	-0.0