Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17615

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,795,031	+				+1.5
3,795,031	+				+0.1
3,795,054	-				+0.5
3,795,061	-				-0.4
3,795,146	-				-0.9
3,795,146	-				+0.7
3,795,178	+				-0.6
3,795,178	+				-0.0
3,795,178	+				+0.5
3,795,178	+				-0.0
3,795,179	-				-1.8
3,795,179	-				+0.2
3,795,208	+				-1.1
3,795,208	+				+0.4
3,795,209	-				-1.6
3,795,209	-				-0.5
3,795,381	+				+0.2
3,795,381	+				+0.8
3,795,382	-				-0.5
3,795,383	+				+0.5
3,795,383	+				+0.6
3,795,384	-				+0.5
3,795,385	+				+2.3
3,795,386	-				-0.3
3,795,400	-				+0.7
3,795,401	+				-0.3
3,795,402	-				-2.3
3,795,421	+				-2.4
3,795,422	-				-0.7
3,795,436	-				+0.7
3,795,529	+		DZA65_RS17610	0.16	-1.3
3,795,541	-		DZA65_RS17610	0.18	+0.2
3,795,555	+		DZA65_RS17610	0.21	-1.3
3,795,555	+		DZA65_RS17610	0.21	-0.6
3,795,556	-		DZA65_RS17610	0.21	+0.4
3,795,556	-		DZA65_RS17610	0.21	-2.3
3,795,556	-		DZA65_RS17610	0.21	+0.7
3,795,624	+		DZA65_RS17610	0.34	+1.5
3,795,625	-		DZA65_RS17610	0.34	-1.1
3,795,625	-				+1.1
3,795,625	-		DZA65_RS17610	0.34	-0.3
3,795,625	-		DZA65_RS17610	0.34	-0.6
3,795,625	-		DZA65_RS17610	0.34	-0.0
3,795,625	-		DZA65_RS17610	0.34	+1.1
3,795,628	+		DZA65_RS17610	0.35	+0.6
3,795,628	+		DZA65_RS17610	0.35	+1.1
3,795,628	+		DZA65_RS17610	0.35	+0.5
3,795,628	+		DZA65_RS17610	0.35	-1.6
3,795,629	-		DZA65_RS17610	0.35	+0.4
3,795,629	-		DZA65_RS17610	0.35	-0.2
3,795,671	-		DZA65_RS17610	0.43	-0.3
3,795,711	+		DZA65_RS17610	0.50	-0.5
3,795,752	-		DZA65_RS17610	0.58	+1.0
3,795,752	-		DZA65_RS17610	0.58	-0.5
3,795,769	+		DZA65_RS17610	0.62	+1.7
3,795,769	+		DZA65_RS17610	0.62	+0.5
3,795,774	+		DZA65_RS17610	0.62	+0.5
3,795,774	+		DZA65_RS17610	0.62	-0.5
3,795,774	+		DZA65_RS17610	0.62	-0.6
3,795,774	+		DZA65_RS17610	0.62	-0.0
3,795,775	-		DZA65_RS17610	0.63	+1.0
3,795,775	-		DZA65_RS17610	0.63	+0.2
3,795,778	+		DZA65_RS17610	0.63	-2.1
3,795,778	+		DZA65_RS17610	0.63	-1.1
3,795,778	+		DZA65_RS17610	0.63	+0.2
3,795,778	+		DZA65_RS17610	0.63	-0.0
3,795,779	-		DZA65_RS17610	0.63	+0.7
3,795,802	+		DZA65_RS17610	0.68	+0.2
3,795,804	+		DZA65_RS17610	0.68	+0.1
3,795,804	+		DZA65_RS17610	0.68	+0.6
3,795,804	+		DZA65_RS17610	0.68	-0.5
3,795,804	+		DZA65_RS17610	0.68	+0.4
3,795,805	-		DZA65_RS17610	0.68	+0.2
3,795,805	-		DZA65_RS17610	0.68	+0.4
3,795,805	-		DZA65_RS17610	0.68	-1.6
3,795,841	+		DZA65_RS17610	0.75	+1.2
3,795,842	-		DZA65_RS17610	0.75	-0.4
3,795,842	-		DZA65_RS17610	0.75	+0.6
3,795,844	+		DZA65_RS17610	0.76	-0.3
3,795,845	-		DZA65_RS17610	0.76	-0.3
3,795,938	-				-0.6
3,795,938	-				-0.0
3,795,940	-				-0.3
3,795,955	+				+0.3
3,795,956	-				-0.3
3,796,000	+				-0.0
3,796,001	-				+0.9
3,796,027	+				-2.4
3,796,027	+				-1.1
3,796,032	-				-0.3
3,796,086	+		DZA65_RS17615	0.19	-1.8
3,796,098	-		DZA65_RS17615	0.23	+0.9
3,796,153	-		DZA65_RS17615	0.41	+1.2
3,796,155	+		DZA65_RS17615	0.42	+0.2
3,796,166	-		DZA65_RS17615	0.45	+0.7
3,796,177	-		DZA65_RS17615	0.49	+1.6
3,796,213	+		DZA65_RS17615	0.61	+0.6
3,796,213	+		DZA65_RS17615	0.61	+0.4
3,796,214	-		DZA65_RS17615	0.61	-0.7
3,796,214	-		DZA65_RS17615	0.61	-0.3
3,796,214	-		DZA65_RS17615	0.61	-1.1
3,796,227	-		DZA65_RS17615	0.66	+0.3
3,796,235	-		DZA65_RS17615	0.68	+0.6
3,796,297	-		DZA65_RS17615	0.89	+1.1
3,796,329	+				+0.4
3,796,329	+				+0.4
3,796,345	-				+0.4
3,796,360	+				-1.1
3,796,361	-				-0.8
3,796,420	+				-1.1
3,796,421	-				-0.2
3,796,422	+				-0.3
3,796,422	+				-0.0
3,796,422	+				+0.7
3,796,422	+				+0.4
3,796,422	+				+0.2
3,796,422	+				-0.5
3,796,423	-				+0.7
3,796,423	-				+0.2
3,796,423	-				+0.3
3,796,423	-				+0.4
3,796,442	+				-0.1
3,796,454	+				-0.4
3,796,477	+				+0.1
3,796,478	-				-0.7
3,796,478	-				+0.9
3,796,505	+				+0.3
3,796,506	-				-0.4
3,796,535	-				-0.4
3,796,535	-				-1.6
3,796,554	+				+0.7
3,796,554	+				+0.1
3,796,554	+				+1.2
3,796,554	+				-1.3
3,796,554	+				-0.3
3,796,554	+				-0.3
3,796,554	+				-0.7
3,796,554	+				-1.8
3,796,554	+				+0.6
3,796,554	+				-2.6
3,796,555	-				-0.3
3,796,555	-				+1.1
3,796,555	-				-1.6
3,796,555	-				-0.9
3,796,555	-				+0.2
3,796,555	-				-0.1
3,796,555	-				+0.7
3,796,555	-				-1.3
3,796,561	+				-0.3
3,796,561	+				-0.6
3,796,561	+				+0.7
3,796,561	+				-0.3
3,796,561	+				-1.9
3,796,562	-				-0.3
3,796,562	-				-0.0
3,796,562	-				+0.1
3,796,562	-				+0.8
3,796,562	-				-2.4
3,796,562	-				+0.5
3,796,562	-				-0.3
3,796,588	+				+0.9
3,796,588	+				-0.3
3,796,589	-				-0.2
3,796,589	-				+1.1
3,796,589	-				+0.1
3,796,589	-				-0.7
3,796,589	-				-0.6
3,796,589	-				-0.1
3,796,589	-				+1.4
3,796,645	-		DZA65_RS17620	0.12	+0.5
3,796,645	-		DZA65_RS17620	0.12	-0.5
3,796,673	-		DZA65_RS17620	0.17	+0.5
3,796,715	+		DZA65_RS17620	0.24	+1.2
3,796,715	+		DZA65_RS17620	0.24	-0.7
3,796,716	-		DZA65_RS17620	0.24	+1.7
3,796,716	-		DZA65_RS17620	0.24	+0.2
3,796,741	-		DZA65_RS17620	0.28	-0.9
3,796,741	-		DZA65_RS17620	0.28	-0.1
3,796,791	-		DZA65_RS17620	0.36	+2.8
3,796,791	-		DZA65_RS17620	0.36	+1.3
3,796,799	-		DZA65_RS17620	0.38	+0.1
3,796,964	+		DZA65_RS17620	0.65	-2.1
3,796,964	+		DZA65_RS17620	0.65	+1.3
3,796,965	-		DZA65_RS17620	0.65	-0.4
3,796,965	-		DZA65_RS17620	0.65	-1.4
3,796,965	-		DZA65_RS17620	0.65	-1.6
3,796,965	-		DZA65_RS17620	0.65	-0.1
3,796,965	-		DZA65_RS17620	0.65	+0.3
3,797,006	+		DZA65_RS17620	0.72	-1.9
3,797,007	-		DZA65_RS17620	0.72	+1.3
3,797,007	-		DZA65_RS17620	0.72	+0.6
3,797,007	-		DZA65_RS17620	0.72	-0.5
3,797,007	-		DZA65_RS17620	0.72	-0.4
3,797,034	+		DZA65_RS17620	0.77	+0.3
3,797,035	-		DZA65_RS17620	0.77	+1.1
3,797,091	-		DZA65_RS17620	0.86	+0.2
3,797,100	+		DZA65_RS17620	0.88	-0.7
3,797,100	+		DZA65_RS17620	0.88	+0.7
3,797,100	+		DZA65_RS17620	0.88	+1.0
3,797,104	+		DZA65_RS17620	0.88	+0.3
3,797,105	-		DZA65_RS17620	0.88	-0.5
3,797,120	+				-0.9
3,797,120	+				-2.4
3,797,121	-				-2.1
3,797,126	+				+1.5
3,797,126	+				-0.3
3,797,127	-				+0.1
3,797,127	-				-0.7
3,797,145	+				+0.2
3,797,146	-				+0.7
3,797,169	+				+0.2
3,797,169	+				-0.2
3,797,169	+				+0.7
3,797,169	+				-0.8
3,797,170	-				-0.5
3,797,173	-				+0.6
3,797,192	-				-1.0
3,797,209	+				-3.2
3,797,209	+				-0.8
3,797,210	-				-0.0
3,797,232	+				+0.0
3,797,233	-				-0.8
3,797,256	+				-1.8
3,797,256	+				-0.3
3,797,256	+				+1.0
3,797,256	+				-2.1
3,797,257	-				-1.3
3,797,257	-				-0.8
3,797,257	-				+0.6
3,797,257	-				+1.2
3,797,272	+				-0.4
3,797,273	-				-0.5
3,797,273	-				-0.7
3,797,291	+				+1.9
3,797,292	-				+0.4
3,797,292	-				-0.4