Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17590

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,791,377	+		DZA65_RS17585	0.46	+0.3
3,791,393	+		DZA65_RS17585	0.47	-0.9
3,791,393	+		DZA65_RS17585	0.47	+0.7
3,791,393	+		DZA65_RS17585	0.47	+1.0
3,791,393	+		DZA65_RS17585	0.47	-1.1
3,791,472	+		DZA65_RS17585	0.51	+1.0
3,791,501	+		DZA65_RS17585	0.53	+1.1
3,791,696	+		DZA65_RS17585	0.65	+0.8
3,791,697	-		DZA65_RS17585	0.65	+1.7
3,791,733	-		DZA65_RS17585	0.67	-1.9
3,791,779	+				+2.3
3,791,780	-		DZA65_RS17585	0.70	+1.1
3,791,828	+		DZA65_RS17585	0.73	-0.1
3,791,828	+		DZA65_RS17585	0.73	+1.5
3,791,828	+		DZA65_RS17585	0.73	+0.2
3,791,829	-		DZA65_RS17585	0.73	-0.9
3,791,886	+		DZA65_RS17585	0.76	-1.6
3,791,886	+		DZA65_RS17585	0.76	-0.3
3,791,886	+		DZA65_RS17585	0.76	-0.5
3,791,886	+		DZA65_RS17585	0.76	+1.4
3,791,886	+		DZA65_RS17585	0.76	-0.0
3,791,886	+		DZA65_RS17585	0.76	+0.1
3,791,886	+		DZA65_RS17585	0.76	-1.6
3,791,887	-		DZA65_RS17585	0.76	+1.9
3,791,887	-		DZA65_RS17585	0.76	+0.1
3,791,887	-		DZA65_RS17585	0.76	-0.7
3,791,887	-		DZA65_RS17585	0.76	+0.9
3,791,887	-		DZA65_RS17585	0.76	-0.5
3,791,887	-		DZA65_RS17585	0.76	-0.7
3,791,887	-		DZA65_RS17585	0.76	+0.0
3,791,887	-				+0.1
3,792,045	+		DZA65_RS17585	0.86	-0.1
3,792,045	+		DZA65_RS17585	0.86	+0.5
3,792,045	+		DZA65_RS17585	0.86	-1.0
3,792,046	-		DZA65_RS17585	0.86	+1.1
3,792,046	-		DZA65_RS17585	0.86	+0.7
3,792,046	-		DZA65_RS17585	0.86	-0.0
3,792,086	+		DZA65_RS17585	0.88	+1.0
3,792,087	-		DZA65_RS17585	0.88	-0.3
3,792,098	-		DZA65_RS17585	0.89	-0.3
3,792,098	-		DZA65_RS17585	0.89	+1.0
3,792,109	+		DZA65_RS17585	0.89	+1.1
3,792,127	-				+0.3
3,792,149	+				+1.7
3,792,149	+				-1.3
3,792,149	+				-0.9
3,792,149	+				+0.7
3,792,149	+				-1.6
3,792,149	+				-0.9
3,792,149	+				+0.2
3,792,149	+				-1.1
3,792,150	-				+1.1
3,792,150	-				-0.7
3,792,150	-				-0.9
3,792,212	+				-0.5
3,792,212	+				-2.6
3,792,212	+				+0.3
3,792,212	+				-0.3
3,792,212	+				-2.1
3,792,213	-				-0.9
3,792,213	-				+0.5
3,792,213	-				-0.5
3,792,213	-				-0.9
3,792,213	-				-1.1
3,792,255	+				-0.5
3,792,256	-				-1.6
3,792,256	-				-0.1
3,792,256	-				-1.3
3,792,256	-				-0.4
3,792,275	+				+1.1
3,792,275	+				-0.4
3,792,275	+				-0.6
3,792,275	+				-0.3
3,792,276	-				+0.7
3,792,310	+				-2.7
3,792,310	+				-0.2
3,792,310	+				-0.3
3,792,310	+				+0.2
3,792,310	+				+0.5
3,792,310	+				-0.4
3,792,310	+				-1.3
3,792,311	-				+1.2
3,792,311	-				+0.1
3,792,311	-				-0.6
3,792,311	-				-1.7
3,792,311	-				+1.9
3,792,313	+				-0.1
3,792,313	+				+0.8
3,792,313	+				-2.1
3,792,313	+				-1.1
3,792,313	+				-1.9
3,792,313	+				+0.6
3,792,313	+				-1.4
3,792,313	+				+1.5
3,792,313	+				-0.9
3,792,313	+				-1.3
3,792,314	-				-2.1
3,792,314	-				+0.7
3,792,314	-				-0.3
3,792,314	-				-0.5
3,792,314	-				+0.2
3,792,314	-				-0.6
3,792,314	-				+0.2
3,792,314	-				-0.3
3,792,320	+				+0.4
3,792,375	+				-1.3
3,792,375	+				-1.4
3,792,375	+				+1.0
3,792,376	-				+0.7
3,792,376	-				+1.5
3,792,376	-				+0.4
3,792,612	+		DZA65_RS17590	0.26	-1.2
3,792,612	+		DZA65_RS17590	0.26	-1.0
3,792,612	+		DZA65_RS17590	0.26	+1.0
3,792,612	+		DZA65_RS17590	0.26	-0.0
3,792,612	+		DZA65_RS17590	0.26	+0.5
3,792,612	+		DZA65_RS17590	0.26	+1.2
3,792,612	+		DZA65_RS17590	0.26	-2.3
3,792,612	+		DZA65_RS17590	0.26	+1.0
3,792,612	+		DZA65_RS17590	0.26	-1.0
3,792,613	-		DZA65_RS17590	0.26	+0.1
3,792,613	-				+2.1
3,792,613	-		DZA65_RS17590	0.26	+0.9
3,792,613	-		DZA65_RS17590	0.26	+0.3
3,792,613	-		DZA65_RS17590	0.26	-0.1
3,792,613	-		DZA65_RS17590	0.26	+0.2
3,792,613	-		DZA65_RS17590	0.26	-0.4
3,792,613	-		DZA65_RS17590	0.26	-0.2
3,792,720	+		DZA65_RS17590	0.35	-1.3
3,792,720	+		DZA65_RS17590	0.35	+0.5
3,792,720	+		DZA65_RS17590	0.35	+0.1
3,792,721	-		DZA65_RS17590	0.35	+0.1
3,792,736	+		DZA65_RS17590	0.36	-2.3
3,792,736	+		DZA65_RS17590	0.36	-0.9
3,792,737	-		DZA65_RS17590	0.36	+1.4
3,792,737	-		DZA65_RS17590	0.36	+0.2
3,792,789	+		DZA65_RS17590	0.40	-1.6
3,792,789	+		DZA65_RS17590	0.40	+0.7
3,792,790	-		DZA65_RS17590	0.40	-0.3
3,792,875	+		DZA65_RS17590	0.47	+0.3
3,792,907	+		DZA65_RS17590	0.50	-0.0
3,792,907	+		DZA65_RS17590	0.50	-0.0
3,792,908	-		DZA65_RS17590	0.50	+0.9
3,792,908	-		DZA65_RS17590	0.50	-0.7
3,792,908	-		DZA65_RS17590	0.50	-2.3
3,792,908	-		DZA65_RS17590	0.50	+0.1
3,793,018	+		DZA65_RS17590	0.59	+0.0
3,793,018	+		DZA65_RS17590	0.59	+0.7
3,793,018	+		DZA65_RS17590	0.59	-1.7
3,793,019	-		DZA65_RS17590	0.59	+0.7
3,793,019	-		DZA65_RS17590	0.59	-1.3
3,793,217	+		DZA65_RS17590	0.75	+0.2
3,793,284	+		DZA65_RS17590	0.80	+1.1
3,793,284	+		DZA65_RS17590	0.80	+0.5
3,793,342	-		DZA65_RS17590	0.85	+2.3
3,793,365	+		DZA65_RS17590	0.87	+0.7
3,793,365	+		DZA65_RS17590	0.87	-0.1
3,793,409	+				+0.3
3,793,409	+				-1.0
3,793,443	-				-1.4
3,793,443	-				+1.0
3,793,473	+				+0.7
3,793,473	+				-3.8
3,793,473	+				+2.0
3,793,473	+				+1.4
3,793,473	+				-0.7
3,793,473	+				+0.3
3,793,473	+				+0.1
3,793,473	+				+0.9
3,793,473	+				-0.6
3,793,473	+				-0.1
3,793,474	-				-1.8
3,793,474	-				-0.9
3,793,474	-				-1.1
3,793,474	-				-0.0
3,793,474	-				+0.7
3,793,474	-				+1.0
3,793,474	-				-0.6
3,793,474	-				-0.3
3,793,474	-				+0.2
3,793,474	-				+1.0
3,793,521	+				+1.0
3,793,522	-				-0.5
3,793,522	-				-0.9
3,793,522	-				-2.3
3,793,604	+				-1.5
3,793,604	+				-0.8
3,793,604	+				-0.1
3,793,604	+				+0.5
3,793,605	-				+0.9
3,793,638	+				-0.3
3,793,716	+				+0.7
3,793,719	+				+1.7
3,793,719	+				+0.3
3,793,719	+				+1.2
3,793,719	+				-0.5
3,793,719	+				+0.4
3,793,720	-				+0.5
3,793,720	-				+0.6
3,793,720	-				+0.5
3,793,720	-				-0.1
3,793,720	-				+0.4
3,793,720	-				+1.1
3,793,720	-				+1.0
3,793,720	-				+1.3
3,793,797	-		DZA65_RS17595	0.26	-2.1
3,793,879	+		DZA65_RS17595	0.52	-0.9
3,793,879	+				-0.3
3,793,879	+		DZA65_RS17595	0.52	+0.2
3,793,879	+		DZA65_RS17595	0.52	-1.4
3,793,880	-		DZA65_RS17595	0.52	+0.4
3,793,880	-		DZA65_RS17595	0.52	-0.5
3,793,880	-		DZA65_RS17595	0.52	+0.7
3,793,902	-		DZA65_RS17595	0.60	-1.4
3,793,969	+		DZA65_RS17595	0.81	-0.7
3,793,970	-		DZA65_RS17595	0.82	+0.6
3,793,970	-		DZA65_RS17595	0.82	+0.3
3,794,002	-				-0.1
3,794,011	+				-2.6
3,794,011	+				+0.1
3,794,019	+				-0.7
3,794,020	-				+0.4
3,794,021	+				+1.4
3,794,021	+				+1.5
3,794,022	-				-1.1
3,794,022	-				-1.7
3,794,022	-				-1.9
3,794,022	-				+0.3
3,794,022	-				-0.1
3,794,039	-				-0.7
3,794,041	+				-0.7
3,794,041	+				-0.4
3,794,042	-				-0.3
3,794,051	-				-1.7
3,794,069	+				-0.5
3,794,069	+				+1.7
3,794,069	+				+0.9
3,794,070	-				-1.6
3,794,070	-				-1.3
3,794,175	-				-0.9
3,794,220	-				+0.7
3,794,235	-				-0.5
3,794,238	+				+1.2
3,794,305	+				-0.0
3,794,305	+				+0.1
3,794,305	+				-1.6
3,794,305	+				+0.7
3,794,305	+				+0.7
3,794,305	+				-3.0
3,794,305	+				+0.3
3,794,305	+				-0.8
3,794,306	-				-0.9
3,794,306	-				-0.2
3,794,306	-				+0.7
3,794,306	-				-1.1
3,794,306	-				+1.9
3,794,410	+		DZA65_RS17605	0.23	-0.6
3,794,410	+		DZA65_RS17605	0.23	+0.9
3,794,411	-		DZA65_RS17605	0.24	+0.6
3,794,411	-		DZA65_RS17605	0.24	+2.4
3,794,411	-		DZA65_RS17605	0.24	+0.5
3,794,411	-		DZA65_RS17605	0.24	-0.9
3,794,411	-		DZA65_RS17605	0.24	+0.6
3,794,411	-		DZA65_RS17605	0.24	+0.1
3,794,416	+		DZA65_RS17605	0.24	-0.3
3,794,416	+		DZA65_RS17605	0.24	+0.7
3,794,443	+		DZA65_RS17605	0.28	-1.7
3,794,477	+		DZA65_RS17605	0.32	+0.1
3,794,478	-		DZA65_RS17605	0.33	-1.3