Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17560

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,784,097	+		DZA65_RS17555	0.58	-0.3
3,784,097	+		DZA65_RS17555	0.58	-2.3
3,784,097	+		DZA65_RS17555	0.58	+1.5
3,784,097	+		DZA65_RS17555	0.58	-1.6
3,784,098	-		DZA65_RS17555	0.58	-0.4
3,784,098	-		DZA65_RS17555	0.58	-0.3
3,784,098	-		DZA65_RS17555	0.58	-0.6
3,784,098	-		DZA65_RS17555	0.58	+0.2
3,784,098	-		DZA65_RS17555	0.58	-0.3
3,784,098	-		DZA65_RS17555	0.58	+0.9
3,784,098	-		DZA65_RS17555	0.58	+0.1
3,784,098	-		DZA65_RS17555	0.58	-1.4
3,784,098	-		DZA65_RS17555	0.58	+0.7
3,784,102	-		DZA65_RS17555	0.58	+0.1
3,784,102	-		DZA65_RS17555	0.58	-0.5
3,784,120	-		DZA65_RS17555	0.59	-1.6
3,784,120	-		DZA65_RS17555	0.59	-0.8
3,784,152	+		DZA65_RS17555	0.61	-0.7
3,784,152	+		DZA65_RS17555	0.61	-1.6
3,784,152	+		DZA65_RS17555	0.61	+0.3
3,784,153	-		DZA65_RS17555	0.61	-1.6
3,784,205	+		DZA65_RS17555	0.64	-0.3
3,784,205	+		DZA65_RS17555	0.64	+1.0
3,784,205	+		DZA65_RS17555	0.64	+0.7
3,784,206	-		DZA65_RS17555	0.64	+0.7
3,784,206	-		DZA65_RS17555	0.64	-0.5
3,784,206	-		DZA65_RS17555	0.64	+1.0
3,784,245	+		DZA65_RS17555	0.66	-0.4
3,784,245	+		DZA65_RS17555	0.66	-1.0
3,784,246	-		DZA65_RS17555	0.66	-2.9
3,784,246	-		DZA65_RS17555	0.66	-0.0
3,784,246	-		DZA65_RS17555	0.66	-0.9
3,784,246	-		DZA65_RS17555	0.66	+2.3
3,784,344	+		DZA65_RS17555	0.72	+1.7
3,784,345	-		DZA65_RS17555	0.72	-0.3
3,784,345	-		DZA65_RS17555	0.72	+1.3
3,784,345	-		DZA65_RS17555	0.72	-0.0
3,784,401	+		DZA65_RS17555	0.75	-0.2
3,784,551	+		DZA65_RS17555	0.84	+0.5
3,784,552	-		DZA65_RS17555	0.84	+1.0
3,784,640	+		DZA65_RS17555	0.90	-0.3
3,784,640	+		DZA65_RS17555	0.90	-0.9
3,784,640	+		DZA65_RS17555	0.90	-2.1
3,784,641	-		DZA65_RS17555	0.90	-0.6
3,784,641	-		DZA65_RS17555	0.90	+1.1
3,784,641	-		DZA65_RS17555	0.90	+0.3
3,784,725	+				+1.1
3,784,726	-				-0.9
3,784,740	+				+0.5
3,784,740	+				-2.1
3,784,766	+				+1.7
3,784,767	-				-1.7
3,784,792	+				-1.3
3,784,811	+				+0.5
3,784,812	-				+0.1
3,784,812	-				+1.1
3,784,812	-				-0.5
3,784,812	-				-1.6
3,784,818	+				-0.5
3,784,818	+				-1.3
3,784,818	+				-0.5
3,784,818	+				-0.3
3,784,818	+				-0.3
3,784,818	+				-1.5
3,784,819	-				+2.1
3,784,819	-				-1.9
3,784,872	+				+1.6
3,784,873	-				+0.4
3,784,873	-				-1.3
3,784,873	-				-1.6
3,784,877	+				+0.4
3,784,896	+				+0.7
3,784,915	+				-0.1
3,784,916	-				-0.7
3,784,916	-				+1.3
3,784,916	-				+0.7
3,784,916	-				+0.5
3,784,916	-				-2.3
3,784,916	-				+0.5
3,784,921	+				+1.1
3,784,921	+				-0.0
3,784,921	+				-0.1
3,784,921	+				-0.1
3,784,921	+				+1.1
3,784,921	+				+0.2
3,784,922	-				-0.3
3,784,922	-				-0.9
3,784,922	-				-0.4
3,784,922	-				+2.7
3,784,922	-				+0.4
3,784,922	-				+2.5
3,784,994	+				-1.5
3,785,040	+				-0.6
3,785,040	+				+1.7
3,785,040	+				+0.1
3,785,041	-				+0.9
3,785,041	-				+1.1
3,785,041	-				+0.5
3,785,041	-				+0.1
3,785,044	+				+0.7
3,785,044	+				-0.9
3,785,044	+				+1.7
3,785,044	+				+2.3
3,785,044	+				+1.1
3,785,044	+				-1.3
3,785,044	+				-0.3
3,785,044	+				-2.0
3,785,044	+				-0.5
3,785,045	-				+0.5
3,785,045	-				+0.0
3,785,045	-				+1.6
3,785,045	-				+2.1
3,785,045	-				+2.3
3,785,125	+		DZA65_RS17560	0.13	+0.4
3,785,125	+		DZA65_RS17560	0.13	+1.7
3,785,126	-		DZA65_RS17560	0.14	+0.7
3,785,189	-		DZA65_RS17560	0.22	-1.5
3,785,223	+		DZA65_RS17560	0.26	+1.3
3,785,223	+		DZA65_RS17560	0.26	-0.3
3,785,223	+		DZA65_RS17560	0.26	-1.5
3,785,223	+		DZA65_RS17560	0.26	-0.6
3,785,223	+		DZA65_RS17560	0.26	-0.4
3,785,224	-		DZA65_RS17560	0.26	-0.4
3,785,244	+		DZA65_RS17560	0.29	-0.1
3,785,336	+		DZA65_RS17560	0.41	+0.6
3,785,337	-		DZA65_RS17560	0.41	+0.8
3,785,358	+		DZA65_RS17560	0.44	-0.7
3,785,358	+		DZA65_RS17560	0.44	+0.0
3,785,358	+		DZA65_RS17560	0.44	-0.3
3,785,358	+		DZA65_RS17560	0.44	-0.1
3,785,358	+		DZA65_RS17560	0.44	+1.3
3,785,358	+		DZA65_RS17560	0.44	+0.7
3,785,358	+		DZA65_RS17560	0.44	+2.0
3,785,359	-		DZA65_RS17560	0.44	-1.6
3,785,359	-		DZA65_RS17560	0.44	+0.2
3,785,359	-		DZA65_RS17560	0.44	+0.6
3,785,359	-		DZA65_RS17560	0.44	+1.1
3,785,362	+		DZA65_RS17560	0.44	-1.7
3,785,363	-		DZA65_RS17560	0.44	+1.2
3,785,363	-		DZA65_RS17560	0.44	+1.1
3,785,363	-		DZA65_RS17560	0.44	+0.6
3,785,363	-		DZA65_RS17560	0.44	-0.1
3,785,427	+		DZA65_RS17560	0.52	+0.7
3,785,427	+		DZA65_RS17560	0.52	+0.3
3,785,428	-		DZA65_RS17560	0.53	+0.9
3,785,487	+		DZA65_RS17560	0.60	-2.1
3,785,488	-		DZA65_RS17560	0.60	+0.3
3,785,549	-		DZA65_RS17560	0.68	+0.8
3,785,549	-		DZA65_RS17560	0.68	+1.0
3,785,549	-		DZA65_RS17560	0.68	-0.2
3,785,698	+		DZA65_RS17560	0.87	+0.1
3,785,698	+		DZA65_RS17560	0.87	-0.9
3,785,699	-		DZA65_RS17560	0.88	-0.9
3,785,699	-		DZA65_RS17560	0.88	+1.3
3,785,699	-		DZA65_RS17560	0.88	-0.3
3,785,699	-		DZA65_RS17560	0.88	+0.7
3,785,700	+		DZA65_RS17560	0.88	-0.7
3,785,700	+		DZA65_RS17560	0.88	-1.6
3,785,700	+		DZA65_RS17560	0.88	-2.3
3,785,700	+		DZA65_RS17560	0.88	-0.9
3,785,700	+		DZA65_RS17560	0.88	-1.0
3,785,701	-		DZA65_RS17560	0.88	-0.0
3,785,701	-		DZA65_RS17560	0.88	+1.7
3,785,701	-				+1.3
3,785,701	-		DZA65_RS17560	0.88	-0.3
3,785,708	+		DZA65_RS17560	0.89	+0.5
3,785,709	-		DZA65_RS17560	0.89	+0.7
3,785,709	-		DZA65_RS17560	0.89	+0.0
3,785,709	-		DZA65_RS17560	0.89	+1.1
3,785,718	+				+0.1
3,785,803	-				+0.0
3,785,803	-				+0.7
3,785,806	+				+0.7
3,785,806	+				+0.0
3,785,806	+				+0.3
3,785,806	+				+0.4
3,785,807	-				-0.1
3,785,807	-				+0.8
3,785,807	-				-1.3
3,785,936	+				+0.7
3,785,936	+				-0.6
3,785,943	+				-2.1
3,785,943	+				+1.4
3,785,943	+				-1.0
3,785,943	+				-0.1
3,785,943	+				-0.9
3,785,944	-				-0.3
3,785,992	+				+0.1
3,786,093	+		DZA65_RS17565	0.17	-2.1
3,786,163	+		DZA65_RS17565	0.23	-0.5
3,786,316	+		DZA65_RS17565	0.35	+0.5
3,786,317	-		DZA65_RS17565	0.35	-0.6
3,786,353	+		DZA65_RS17565	0.38	+0.3
3,786,353	+		DZA65_RS17565	0.38	-0.3
3,786,353	+		DZA65_RS17565	0.38	+0.0
3,786,353	+		DZA65_RS17565	0.38	+0.2
3,786,353	+		DZA65_RS17565	0.38	+0.7
3,786,353	+		DZA65_RS17565	0.38	+0.6
3,786,353	+		DZA65_RS17565	0.38	-0.4
3,786,353	+		DZA65_RS17565	0.38	-0.3
3,786,353	+		DZA65_RS17565	0.38	-0.3
3,786,353	+		DZA65_RS17565	0.38	-0.5
3,786,353	+				+0.7
3,786,354	-		DZA65_RS17565	0.38	+0.4
3,786,354	-		DZA65_RS17565	0.38	-0.9
3,786,354	-		DZA65_RS17565	0.38	+0.7
3,786,354	-		DZA65_RS17565	0.38	-0.5
3,786,354	-		DZA65_RS17565	0.38	-2.6
3,786,354	-		DZA65_RS17565	0.38	-0.3
3,786,357	+		DZA65_RS17565	0.38	-0.4
3,786,357	+		DZA65_RS17565	0.38	-0.9
3,786,357	+		DZA65_RS17565	0.38	-1.0
3,786,357	+		DZA65_RS17565	0.38	+1.1
3,786,379	+		DZA65_RS17565	0.40	-1.6
3,786,394	+		DZA65_RS17565	0.41	+0.6
3,786,426	+		DZA65_RS17565	0.43	-0.9
3,786,426	+		DZA65_RS17565	0.43	-1.9
3,786,426	+		DZA65_RS17565	0.43	+1.2
3,786,426	+		DZA65_RS17565	0.43	+0.3
3,786,426	+		DZA65_RS17565	0.43	+2.0
3,786,426	+		DZA65_RS17565	0.43	+1.9
3,786,426	+		DZA65_RS17565	0.43	-0.4
3,786,426	+		DZA65_RS17565	0.43	-1.4
3,786,426	+		DZA65_RS17565	0.43	+0.5
3,786,426	+		DZA65_RS17565	0.43	+0.1
3,786,426	+		DZA65_RS17565	0.43	+1.6
3,786,426	+		DZA65_RS17565	0.43	-0.0
3,786,426	+		DZA65_RS17565	0.43	-0.7
3,786,426	+		DZA65_RS17565	0.43	-1.7
3,786,426	+		DZA65_RS17565	0.43	-2.7
3,786,426	+		DZA65_RS17565	0.43	+0.5
3,786,427	-		DZA65_RS17565	0.43	-0.3
3,786,427	-		DZA65_RS17565	0.43	+1.5
3,786,427	-		DZA65_RS17565	0.43	-0.5
3,786,427	-		DZA65_RS17565	0.43	+0.2
3,786,427	-		DZA65_RS17565	0.43	+0.7
3,786,427	-		DZA65_RS17565	0.43	-0.3
3,786,427	-		DZA65_RS17565	0.43	-0.3
3,786,427	-		DZA65_RS17565	0.43	-0.7
3,786,427	-		DZA65_RS17565	0.43	-0.7