Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17285

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,726,340	+				+0.3
3,726,341	-				-0.1
3,726,341	-				+0.1
3,726,523	+		DZA65_RS17280	0.27	-0.4
3,726,523	+		DZA65_RS17280	0.27	+0.1
3,726,524	-		DZA65_RS17280	0.27	-1.1
3,726,524	-		DZA65_RS17280	0.27	-2.3
3,726,524	-		DZA65_RS17280	0.27	+0.3
3,726,553	+		DZA65_RS17280	0.31	+1.3
3,726,554	-		DZA65_RS17280	0.31	-0.7
3,726,554	-		DZA65_RS17280	0.31	-0.0
3,726,577	+		DZA65_RS17280	0.34	+0.1
3,726,577	+		DZA65_RS17280	0.34	+2.7
3,726,595	+		DZA65_RS17280	0.36	+1.2
3,726,595	+		DZA65_RS17280	0.36	+0.9
3,726,595	+		DZA65_RS17280	0.36	-0.9
3,726,595	+		DZA65_RS17280	0.36	+0.4
3,726,595	+		DZA65_RS17280	0.36	+1.4
3,726,595	+		DZA65_RS17280	0.36	+0.7
3,726,596	-		DZA65_RS17280	0.36	+1.3
3,726,596	-		DZA65_RS17280	0.36	-1.3
3,726,596	-		DZA65_RS17280	0.36	-0.3
3,726,596	-		DZA65_RS17280	0.36	-0.8
3,726,596	-		DZA65_RS17280	0.36	-0.3
3,726,596	-		DZA65_RS17280	0.36	+0.2
3,726,596	-		DZA65_RS17280	0.36	+0.3
3,726,598	-		DZA65_RS17280	0.37	+3.3
3,726,598	-		DZA65_RS17280	0.37	-0.6
3,726,598	-		DZA65_RS17280	0.37	+0.4
3,726,638	+		DZA65_RS17280	0.42	-0.4
3,726,638	+		DZA65_RS17280	0.42	-1.4
3,726,638	+		DZA65_RS17280	0.42	-1.6
3,726,638	+				+2.7
3,726,638	+		DZA65_RS17280	0.42	-1.0
3,726,638	+		DZA65_RS17280	0.42	-0.5
3,726,638	+		DZA65_RS17280	0.42	+0.3
3,726,638	+		DZA65_RS17280	0.42	-0.3
3,726,638	+		DZA65_RS17280	0.42	-0.3
3,726,638	+		DZA65_RS17280	0.42	+0.1
3,726,639	-		DZA65_RS17280	0.42	-1.3
3,726,639	-		DZA65_RS17280	0.42	+2.3
3,726,639	-		DZA65_RS17280	0.42	-0.9
3,726,639	-		DZA65_RS17280	0.42	-0.9
3,726,651	-		DZA65_RS17280	0.43	-0.3
3,726,672	+		DZA65_RS17280	0.46	+0.1
3,726,672	+		DZA65_RS17280	0.46	+0.5
3,726,672	+		DZA65_RS17280	0.46	+1.3
3,726,672	+		DZA65_RS17280	0.46	-0.6
3,726,672	+				+2.1
3,726,673	-		DZA65_RS17280	0.46	+0.3
3,726,673	-		DZA65_RS17280	0.46	+0.7
3,726,673	-		DZA65_RS17280	0.46	+1.2
3,726,673	-		DZA65_RS17280	0.46	+0.4
3,726,673	-		DZA65_RS17280	0.46	+0.4
3,726,673	-		DZA65_RS17280	0.46	-0.0
3,726,673	-		DZA65_RS17280	0.46	-0.0
3,726,680	-		DZA65_RS17280	0.47	-0.3
3,726,680	-		DZA65_RS17280	0.47	+1.2
3,726,738	+		DZA65_RS17280	0.54	+1.7
3,726,738	+		DZA65_RS17280	0.54	-0.7
3,726,738	+		DZA65_RS17280	0.54	+0.3
3,726,738	+		DZA65_RS17280	0.54	-0.3
3,726,738	+		DZA65_RS17280	0.54	+1.0
3,726,738	+		DZA65_RS17280	0.54	+0.1
3,726,738	+		DZA65_RS17280	0.54	-1.6
3,726,738	+		DZA65_RS17280	0.54	-1.4
3,726,739	-		DZA65_RS17280	0.54	+0.3
3,726,739	-		DZA65_RS17280	0.54	+0.1
3,726,739	-		DZA65_RS17280	0.54	+0.7
3,726,739	-		DZA65_RS17280	0.54	+1.9
3,726,739	-		DZA65_RS17280	0.54	-1.3
3,726,739	-		DZA65_RS17280	0.54	-1.5
3,726,739	-		DZA65_RS17280	0.54	-1.4
3,726,739	-		DZA65_RS17280	0.54	-0.6
3,726,739	-		DZA65_RS17280	0.54	+0.4
3,726,742	+		DZA65_RS17280	0.55	-0.1
3,726,742	+		DZA65_RS17280	0.55	+0.7
3,726,742	+		DZA65_RS17280	0.55	-0.6
3,726,742	+		DZA65_RS17280	0.55	+1.2
3,726,742	+		DZA65_RS17280	0.55	-0.3
3,726,743	-		DZA65_RS17280	0.55	-0.0
3,726,743	-		DZA65_RS17280	0.55	+0.5
3,726,743	-		DZA65_RS17280	0.55	+2.5
3,726,758	+		DZA65_RS17280	0.57	+0.2
3,726,759	-		DZA65_RS17280	0.57	-0.1
3,726,822	+		DZA65_RS17280	0.65	-0.5
3,726,822	+		DZA65_RS17280	0.65	+0.6
3,726,823	-		DZA65_RS17280	0.65	-0.0
3,726,823	-		DZA65_RS17280	0.65	+2.0
3,726,829	+		DZA65_RS17280	0.66	+0.2
3,726,830	-		DZA65_RS17280	0.66	+0.0
3,726,830	-		DZA65_RS17280	0.66	+0.4
3,726,830	-		DZA65_RS17280	0.66	+1.3
3,726,830	-		DZA65_RS17280	0.66	+1.9
3,726,940	+		DZA65_RS17280	0.80	-2.3
3,726,940	+		DZA65_RS17280	0.80	-0.0
3,726,947	-		DZA65_RS17280	0.81	-0.7
3,726,947	-		DZA65_RS17280	0.81	+1.0
3,726,958	+		DZA65_RS17280	0.82	+1.4
3,727,020	+				-2.1
3,727,020	+				+0.1
3,727,020	+				-1.6
3,727,020	+				+1.0
3,727,021	-				+0.2
3,727,021	-				-0.2
3,727,045	+				-0.6
3,727,046	-				-0.1
3,727,046	-				-0.9
3,727,046	-				+0.1
3,727,071	+				+0.0
3,727,072	-				-0.5
3,727,072	-				-1.9
3,727,083	+				-0.9
3,727,083	+				-0.1
3,727,084	-				-0.3
3,727,084	-				+1.3
3,727,084	-				+1.6
3,727,084	-				+1.6
3,727,084	-				-0.3
3,727,094	-				-0.6
3,727,112	+				+0.6
3,727,112	+				+0.2
3,727,112	+				-1.3
3,727,112	+				+2.1
3,727,113	-				+1.6
3,727,113	-				-0.8
3,727,113	-				+0.0
3,727,113	-				-0.1
3,727,138	+				+0.5
3,727,138	+				+0.3
3,727,138	+				+0.7
3,727,139	-				+0.6
3,727,167	+				+0.4
3,727,167	+				-1.2
3,727,167	+				-0.6
3,727,168	-				-1.2
3,727,168	-				+0.3
3,727,168	-				-0.5
3,727,169	+				+0.4
3,727,169	+				-1.2
3,727,170	-				-2.3
3,727,170	-				-0.3
3,727,206	+				-1.6
3,727,206	+				+0.7
3,727,206	+				+0.0
3,727,206	+				-0.9
3,727,207	-				-0.1
3,727,225	+				-0.6
3,727,225	+				-0.8
3,727,247	+				-2.5
3,727,247	+				-0.1
3,727,247	+				+1.0
3,727,254	+				-0.3
3,727,255	-				+1.3
3,727,255	-				-0.7
3,727,286	+				-0.7
3,727,287	-				+0.4
3,727,321	+				+0.3
3,727,321	+				+0.7
3,727,322	-				-0.5
3,727,322	-				+2.3
3,727,322	-				+1.4
3,727,322	-				+0.8
3,727,322	-				+0.5
3,727,322	-				+0.4
3,727,322	-				-0.7
3,727,322	-				+0.2
3,727,322	-				+0.0
3,727,323	+				-1.5
3,727,323	+				-0.6
3,727,323	+				-1.3
3,727,323	+				-0.9
3,727,323	+				-1.6
3,727,323	+				-1.5
3,727,324	-				+0.9
3,727,324	-				-0.7
3,727,324	-				-1.9
3,727,324	-				+1.0
3,727,324	-				-0.7
3,727,324	-				-1.9
3,727,324	-				-1.3
3,727,324	-				+0.4