Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17060

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,681,666	+		DZA65_RS17055	0.75	+0.4
3,681,719	+		DZA65_RS17055	0.79	+1.1
3,681,729	+		DZA65_RS17055	0.80	-0.1
3,681,752	+		DZA65_RS17055	0.82	+1.0
3,681,753	-		DZA65_RS17055	0.82	+1.7
3,681,806	+		DZA65_RS17055	0.86	+0.6
3,681,921	+				+0.1
3,681,922	-				-1.9
3,682,042	+				-0.4
3,682,062	-				+0.3
3,682,186	+				+2.0
3,682,186	+				-0.0
3,682,189	+				-0.5
3,682,189	+				+0.7
3,682,190	-				-0.1
3,682,254	+				+0.4
3,682,254	+				+0.4
3,682,282	+				+0.1
3,682,303	-				-0.9
3,682,323	+				+2.0
3,682,354	-				+0.9
3,682,399	+				-0.1
3,682,400	-				+0.9
3,682,416	+				+0.3
3,682,417	-				+1.0
3,682,417	-				-1.1
3,682,519	+				-0.6
3,682,520	-				-2.8
3,682,520	-				+0.4
3,682,520	-				+0.5
3,682,520	-				-0.4
3,682,522	+				-2.3
3,682,522	+				+0.1
3,682,522	+				-0.3
3,682,523	-				+0.4
3,682,596	+				-2.8
3,682,596	+				-0.5
3,682,613	-				+1.7
3,682,667	+				-0.5
3,682,667	+				+0.1
3,682,668	-				-0.7
3,682,668	-				-0.5
3,682,687	+				+0.1
3,682,688	-				-0.3
3,682,688	-				+0.7
3,682,736	-				+0.9
3,682,758	+		DZA65_RS17060	0.11	-0.3
3,682,758	+		DZA65_RS17060	0.11	-1.9
3,682,759	-		DZA65_RS17060	0.11	-1.8
3,682,809	+		DZA65_RS17060	0.17	+1.3
3,682,884	+		DZA65_RS17060	0.24	-1.2
3,682,885	-		DZA65_RS17060	0.24	-1.1
3,682,885	-		DZA65_RS17060	0.24	-0.9
3,682,885	-		DZA65_RS17060	0.24	-0.7
3,682,935	+		DZA65_RS17060	0.29	-0.3
3,682,936	-		DZA65_RS17060	0.29	+0.3
3,682,936	-		DZA65_RS17060	0.29	+0.7
3,682,937	+		DZA65_RS17060	0.29	+1.7
3,682,937	+		DZA65_RS17060	0.29	-1.1
3,682,938	-		DZA65_RS17060	0.30	-0.5
3,682,938	-		DZA65_RS17060	0.30	+0.6
3,682,938	-		DZA65_RS17060	0.30	-0.9
3,682,962	+		DZA65_RS17060	0.32	-1.6
3,682,962	+		DZA65_RS17060	0.32	-0.9
3,682,964	+		DZA65_RS17060	0.32	-0.6
3,682,964	+		DZA65_RS17060	0.32	-0.6
3,682,964	+		DZA65_RS17060	0.32	-0.2
3,682,964	+		DZA65_RS17060	0.32	+0.3
3,682,964	+		DZA65_RS17060	0.32	+0.0
3,682,964	+		DZA65_RS17060	0.32	-0.0
3,682,964	+		DZA65_RS17060	0.32	+0.1
3,682,964	+		DZA65_RS17060	0.32	-0.9
3,682,964	+		DZA65_RS17060	0.32	-0.5
3,682,964	+		DZA65_RS17060	0.32	-0.6
3,682,964	+		DZA65_RS17060	0.32	-0.7
3,682,964	+		DZA65_RS17060	0.32	-0.2
3,682,964	+		DZA65_RS17060	0.32	-2.5
3,682,964	+		DZA65_RS17060	0.32	+0.3
3,682,964	+		DZA65_RS17060	0.32	+0.3
3,682,965	-		DZA65_RS17060	0.32	-0.3
3,682,965	-		DZA65_RS17060	0.32	-0.0
3,682,965	-				-0.9
3,682,965	-		DZA65_RS17060	0.32	-0.3
3,682,965	-		DZA65_RS17060	0.32	-1.5
3,682,965	-		DZA65_RS17060	0.32	-1.6
3,682,965	-		DZA65_RS17060	0.32	-0.9
3,682,965	-		DZA65_RS17060	0.32	-1.4
3,682,965	-		DZA65_RS17060	0.32	-2.1
3,682,965	-		DZA65_RS17060	0.32	+0.2
3,682,965	-		DZA65_RS17060	0.32	+1.0
3,682,965	-		DZA65_RS17060	0.32	+1.0
3,682,965	-		DZA65_RS17060	0.32	-0.3
3,682,965	-		DZA65_RS17060	0.32	-1.6
3,683,271	+		DZA65_RS17060	0.63	-0.6
3,683,271	+		DZA65_RS17060	0.63	+0.9
3,683,271	+		DZA65_RS17060	0.63	-0.7
3,683,271	+		DZA65_RS17060	0.63	-0.7
3,683,271	+		DZA65_RS17060	0.63	+0.1
3,683,271	+		DZA65_RS17060	0.63	+0.5
3,683,271	+		DZA65_RS17060	0.63	-1.1
3,683,272	-		DZA65_RS17060	0.63	+0.5
3,683,321	-		DZA65_RS17060	0.68	-0.0
3,683,390	+		DZA65_RS17060	0.75	+0.7
3,683,390	+		DZA65_RS17060	0.75	+0.6
3,683,391	-		DZA65_RS17060	0.75	+1.4
3,683,391	-		DZA65_RS17060	0.75	+0.5
3,683,391	-		DZA65_RS17060	0.75	-0.6
3,683,463	+		DZA65_RS17060	0.82	-0.3
3,683,464	-		DZA65_RS17060	0.82	+0.7
3,683,464	-		DZA65_RS17060	0.82	+0.0
3,683,464	-		DZA65_RS17060	0.82	-0.5
3,683,464	-		DZA65_RS17060	0.82	-0.7
3,683,464	-		DZA65_RS17060	0.82	-2.0
3,683,517	+		DZA65_RS17060	0.88	-0.9
3,683,711	+				+0.1
3,683,712	-				-0.3
3,683,766	+		DZA65_RS17065	0.16	-0.4
3,683,766	+		DZA65_RS17065	0.16	+0.4
3,683,766	+				-1.6
3,683,766	+		DZA65_RS17065	0.16	+0.2
3,683,766	+		DZA65_RS17065	0.16	-0.5
3,683,767	-		DZA65_RS17065	0.16	-1.1
3,683,767	-		DZA65_RS17065	0.16	-0.7
3,683,767	-		DZA65_RS17065	0.16	+1.5
3,683,767	-		DZA65_RS17065	0.16	-1.3
3,683,767	-		DZA65_RS17065	0.16	+0.7
3,683,767	-		DZA65_RS17065	0.16	-0.3
3,683,776	-		DZA65_RS17065	0.17	-1.5
3,683,776	-		DZA65_RS17065	0.17	-0.3
3,683,803	+		DZA65_RS17065	0.20	+0.3
3,683,804	-		DZA65_RS17065	0.20	+0.8
3,683,873	-		DZA65_RS17065	0.28	-0.0
3,683,890	-		DZA65_RS17065	0.30	+0.7
3,683,958	-		DZA65_RS17065	0.37	+1.0
3,684,024	+		DZA65_RS17065	0.45	+0.4
3,684,025	-		DZA65_RS17065	0.45	-1.3
3,684,025	-		DZA65_RS17065	0.45	-1.6
3,684,025	-		DZA65_RS17065	0.45	+1.4
3,684,025	-		DZA65_RS17065	0.45	-1.1
3,684,025	-		DZA65_RS17065	0.45	+0.6
3,684,041	+		DZA65_RS17065	0.47	+0.2
3,684,041	+		DZA65_RS17065	0.47	-2.0
3,684,041	+		DZA65_RS17065	0.47	-1.9
3,684,041	+		DZA65_RS17065	0.47	-0.3
3,684,041	+		DZA65_RS17065	0.47	-0.5
3,684,042	-		DZA65_RS17065	0.47	+0.4
3,684,042	-		DZA65_RS17065	0.47	-0.3
3,684,042	-		DZA65_RS17065	0.47	-1.7
3,684,042	-		DZA65_RS17065	0.47	+0.4
3,684,072	+		DZA65_RS17065	0.50	-0.1
3,684,072	+		DZA65_RS17065	0.50	-0.5
3,684,072	+		DZA65_RS17065	0.50	-1.1
3,684,073	-		DZA65_RS17065	0.50	+1.2
3,684,073	-		DZA65_RS17065	0.50	+0.4
3,684,109	-		DZA65_RS17065	0.54	+0.7
3,684,110	+		DZA65_RS17065	0.55	-0.1
3,684,110	+		DZA65_RS17065	0.55	-0.4
3,684,110	+		DZA65_RS17065	0.55	-0.1
3,684,110	+		DZA65_RS17065	0.55	-2.1
3,684,110	+		DZA65_RS17065	0.55	-1.2
3,684,110	+		DZA65_RS17065	0.55	+1.0
3,684,110	+		DZA65_RS17065	0.55	+0.5
3,684,110	+		DZA65_RS17065	0.55	-0.7
3,684,110	+		DZA65_RS17065	0.55	+0.7
3,684,110	+		DZA65_RS17065	0.55	+0.4
3,684,110	+		DZA65_RS17065	0.55	-0.6
3,684,111	-		DZA65_RS17065	0.55	-1.8
3,684,111	-		DZA65_RS17065	0.55	-0.0
3,684,111	-		DZA65_RS17065	0.55	+0.8
3,684,111	-		DZA65_RS17065	0.55	+0.3
3,684,141	+		DZA65_RS17065	0.58	-0.2
3,684,141	+		DZA65_RS17065	0.58	+0.1
3,684,141	+		DZA65_RS17065	0.58	-0.2
3,684,141	+		DZA65_RS17065	0.58	-0.5
3,684,141	+		DZA65_RS17065	0.58	-2.4
3,684,141	+		DZA65_RS17065	0.58	-0.9
3,684,141	+		DZA65_RS17065	0.58	+0.1
3,684,141	+		DZA65_RS17065	0.58	+2.1
3,684,141	+		DZA65_RS17065	0.58	+0.5
3,684,141	+		DZA65_RS17065	0.58	-0.3
3,684,141	+				-1.6
3,684,141	+		DZA65_RS17065	0.58	+1.7
3,684,141	+		DZA65_RS17065	0.58	-2.5
3,684,141	+		DZA65_RS17065	0.58	-0.7
3,684,141	+		DZA65_RS17065	0.58	+0.1
3,684,141	+				-0.1
3,684,141	+		DZA65_RS17065	0.58	-0.9
3,684,141	+		DZA65_RS17065	0.58	-2.1
3,684,141	+		DZA65_RS17065	0.58	+0.7
3,684,141	+		DZA65_RS17065	0.58	+1.7
3,684,141	+		DZA65_RS17065	0.58	-1.2
3,684,141	+				-0.9
3,684,141	+		DZA65_RS17065	0.58	-0.2
3,684,141	+		DZA65_RS17065	0.58	-0.9
3,684,141	+		DZA65_RS17065	0.58	-0.2
3,684,142	-		DZA65_RS17065	0.58	-2.0
3,684,142	-		DZA65_RS17065	0.58	-0.0
3,684,142	-		DZA65_RS17065	0.58	+0.7
3,684,142	-		DZA65_RS17065	0.58	-0.3
3,684,142	-		DZA65_RS17065	0.58	-0.6
3,684,142	-		DZA65_RS17065	0.58	+0.8
3,684,142	-		DZA65_RS17065	0.58	+0.4
3,684,142	-		DZA65_RS17065	0.58	+0.4
3,684,142	-		DZA65_RS17065	0.58	-0.9
3,684,142	-		DZA65_RS17065	0.58	-0.6
3,684,142	-		DZA65_RS17065	0.58	-0.5
3,684,142	-		DZA65_RS17065	0.58	+0.1
3,684,142	-		DZA65_RS17065	0.58	+1.7
3,684,142	-		DZA65_RS17065	0.58	-1.3
3,684,142	-		DZA65_RS17065	0.58	+0.5
3,684,142	-		DZA65_RS17065	0.58	-0.1
3,684,142	-		DZA65_RS17065	0.58	-0.3
3,684,142	-		DZA65_RS17065	0.58	-0.2
3,684,142	-		DZA65_RS17065	0.58	-1.3
3,684,263	-		DZA65_RS17065	0.72	+0.0
3,684,355	+		DZA65_RS17065	0.82	-0.2
3,684,444	+				+0.4
3,684,444	+				+1.1
3,684,444	+				+1.1
3,684,444	+				+2.0
3,684,445	-				+1.2
3,684,445	-				+0.4
3,684,445	-				-0.4
3,684,445	-				+0.5
3,684,445	-				-0.9
3,684,445	-				+0.9
3,684,445	-				-0.2
3,684,500	-				+0.6
3,684,522	+				-1.1
3,684,522	+				-0.1
3,684,522	+				+3.0
3,684,523	-				-1.2
3,684,524	+				+0.1
3,684,556	+				+0.5
3,684,557	-				+0.4
3,684,557	-				+0.3
3,684,621	+		DZA65_RS17070	0.12	+1.1
3,684,621	+		DZA65_RS17070	0.12	-0.6
3,684,621	+		DZA65_RS17070	0.12	+0.2
3,684,622	-		DZA65_RS17070	0.12	+0.7
3,684,622	-		DZA65_RS17070	0.12	-1.3
3,684,622	-		DZA65_RS17070	0.12	+0.2
3,684,622	-		DZA65_RS17070	0.12	-1.6
3,684,627	+		DZA65_RS17070	0.13	+0.9
3,684,627	+		DZA65_RS17070	0.13	+0.1