Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16660

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,595,672	-				+0.9
3,595,810	-		DZA65_RS16655	0.16	-1.2
3,595,876	-		DZA65_RS16655	0.22	-0.2
3,595,891	-		DZA65_RS16655	0.24	+0.8
3,595,891	-		DZA65_RS16655	0.24	+0.4
3,596,071	-		DZA65_RS16655	0.42	-0.3
3,596,071	-		DZA65_RS16655	0.42	+0.2
3,596,071	-		DZA65_RS16655	0.42	+0.9
3,596,071	-		DZA65_RS16655	0.42	-1.3
3,596,071	-		DZA65_RS16655	0.42	+1.2
3,596,075	-		DZA65_RS16655	0.42	+0.3
3,596,075	-		DZA65_RS16655	0.42	+0.1
3,596,080	-		DZA65_RS16655	0.43	+0.6
3,596,080	-		DZA65_RS16655	0.43	-2.9
3,596,080	-		DZA65_RS16655	0.43	-1.2
3,596,080	-		DZA65_RS16655	0.43	-0.3
3,596,270	-		DZA65_RS16655	0.62	-2.3
3,596,454	-		DZA65_RS16655	0.80	-1.1
3,596,454	-		DZA65_RS16655	0.80	-0.9
3,596,454	-		DZA65_RS16655	0.80	+0.4
3,596,470	-		DZA65_RS16655	0.82	-1.8
3,596,491	-		DZA65_RS16655	0.84	+0.7
3,596,491	-		DZA65_RS16655	0.84	-2.2
3,596,623	-				-1.6
3,596,623	-				-2.7
3,596,623	-				-0.7
3,596,623	-				+0.7
3,596,626	-				+0.1
3,596,626	-				-1.5
3,596,626	-				-0.1
3,596,644	-				-0.7
3,596,644	-				-1.7
3,596,644	-				-0.6
3,596,644	-				-0.7
3,596,651	-				-0.5
3,596,655	-				+2.7
3,596,655	-				-0.5
3,596,655	-				-2.5
3,596,710	-				+1.9
3,596,715	-				-1.8
3,596,715	-				+0.4
3,596,715	-				+0.1
3,596,715	-				+1.7
3,596,715	-				-0.0
3,596,715	-				+0.4
3,596,715	-				-0.6
3,596,715	-				-1.5
3,596,715	-				-0.2
3,596,715	-				+1.6
3,596,715	-				-1.1
3,596,715	-				-1.7
3,596,715	-				-1.0
3,596,715	-				-2.5
3,596,718	-		DZA65_RS16660	0.10	+0.2
3,596,718	-		DZA65_RS16660	0.10	+0.2
3,596,718	-		DZA65_RS16660	0.10	-0.8
3,596,760	-		DZA65_RS16660	0.16	-0.3
3,596,800	-		DZA65_RS16660	0.21	-1.2
3,596,800	-		DZA65_RS16660	0.21	-0.7
3,596,804	-		DZA65_RS16660	0.21	-0.0
3,596,804	-		DZA65_RS16660	0.21	+0.7
3,596,804	-		DZA65_RS16660	0.21	-0.9
3,596,804	-		DZA65_RS16660	0.21	-1.9
3,596,804	-		DZA65_RS16660	0.21	+0.7
3,596,804	-		DZA65_RS16660	0.21	+0.9
3,596,804	-		DZA65_RS16660	0.21	+0.4
3,596,830	-		DZA65_RS16660	0.25	-2.3
3,596,893	-		DZA65_RS16660	0.33	+1.0
3,596,893	-		DZA65_RS16660	0.33	+0.1
3,596,893	-		DZA65_RS16660	0.33	-1.7
3,597,036	-		DZA65_RS16660	0.52	-0.9
3,597,039	+		DZA65_RS16660	0.52	-1.3
3,597,040	-		DZA65_RS16660	0.52	+0.7
3,597,048	-		DZA65_RS16660	0.53	-0.5
3,597,073	+		DZA65_RS16660	0.57	+0.7
3,597,074	-		DZA65_RS16660	0.57	-2.3
3,597,074	-		DZA65_RS16660	0.57	-0.5
3,597,074	-		DZA65_RS16660	0.57	+0.7
3,597,080	+		DZA65_RS16660	0.57	+0.6
3,597,081	-		DZA65_RS16660	0.58	+0.3
3,597,162	+		DZA65_RS16660	0.68	-1.3
3,597,162	+		DZA65_RS16660	0.68	-1.9
3,597,162	+		DZA65_RS16660	0.68	-1.3
3,597,162	+		DZA65_RS16660	0.68	-2.2
3,597,162	+		DZA65_RS16660	0.68	-0.5
3,597,163	-		DZA65_RS16660	0.68	+0.1
3,597,247	+		DZA65_RS16660	0.79	-0.9
3,597,247	+		DZA65_RS16660	0.79	-1.7
3,597,248	-		DZA65_RS16660	0.79	+1.0
3,597,262	-		DZA65_RS16660	0.81	+0.2
3,597,262	-		DZA65_RS16660	0.81	+0.9
3,597,262	-		DZA65_RS16660	0.81	+0.8
3,597,262	-		DZA65_RS16660	0.81	-1.3
3,597,262	-		DZA65_RS16660	0.81	-0.2
3,597,359	+				-0.3
3,597,386	+				-0.4
3,597,387	-				+0.2
3,597,453	+				-0.9
3,597,453	+				-0.3
3,597,453	+				+0.9
3,597,453	+				-0.4
3,597,453	+				+1.9
3,597,453	+				+1.1
3,597,453	+				+0.6
3,597,454	-				-1.3
3,597,454	-				+1.0
3,597,454	-				-0.3
3,597,454	-				+0.2
3,597,454	-				-2.3
3,597,454	-				-1.0
3,597,454	-				-0.9
3,597,454	-				+0.2
3,597,539	+				-0.6
3,597,539	+				+0.6
3,597,539	+				+0.1
3,597,539	+				+1.1
3,597,539	+				+1.2
3,597,539	+				+0.4
3,597,545	-				+1.8
3,597,563	+				-1.9
3,597,563	+				-0.9
3,597,563	+				-0.3
3,597,564	-				-1.0
3,597,564	-				+0.5
3,597,564	-				-2.3
3,597,564	-				-0.8
3,597,564	-				+0.5
3,597,657	+				-0.3
3,597,657	+				+0.5
3,597,657	+				+2.0
3,597,657	+				-0.4
3,597,658	-				-0.1
3,597,658	-				+0.3
3,597,658	-				-0.4
3,597,730	-		DZA65_RS16665	0.11	-0.7
3,597,752	+		DZA65_RS16665	0.13	-1.4
3,597,752	+		DZA65_RS16665	0.13	-1.2
3,597,926	+		DZA65_RS16665	0.28	+0.5
3,597,926	+		DZA65_RS16665	0.28	-0.9
3,597,926	+		DZA65_RS16665	0.28	+0.5
3,597,926	+		DZA65_RS16665	0.28	+2.1
3,597,926	+		DZA65_RS16665	0.28	+0.3
3,597,927	-		DZA65_RS16665	0.28	-0.3
3,597,927	-		DZA65_RS16665	0.28	-2.5
3,597,927	-		DZA65_RS16665	0.28	+0.2
3,597,927	-				+0.1
3,597,964	-		DZA65_RS16665	0.31	-1.4
3,598,007	+		DZA65_RS16665	0.35	-2.5
3,598,007	+		DZA65_RS16665	0.35	-0.1
3,598,007	+		DZA65_RS16665	0.35	+0.6
3,598,008	-		DZA65_RS16665	0.35	-0.4
3,598,008	-		DZA65_RS16665	0.35	+1.0
3,598,020	+		DZA65_RS16665	0.36	-2.0
3,598,089	+		DZA65_RS16665	0.42	-0.4
3,598,090	-		DZA65_RS16665	0.42	-0.4
3,598,090	-		DZA65_RS16665	0.42	-2.3
3,598,137	+		DZA65_RS16665	0.46	+0.5
3,598,137	+		DZA65_RS16665	0.46	+2.4
3,598,137	+		DZA65_RS16665	0.46	-0.8
3,598,137	+		DZA65_RS16665	0.46	+0.1
3,598,137	+		DZA65_RS16665	0.46	+0.8
3,598,137	+		DZA65_RS16665	0.46	-1.3
3,598,306	+		DZA65_RS16665	0.61	+0.2
3,598,307	-		DZA65_RS16665	0.61	-0.4
3,598,318	-		DZA65_RS16665	0.62	+2.5
3,598,363	-		DZA65_RS16665	0.66	+0.6