Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16465

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,565,419	+		DZA65_RS16455	0.83	+0.3
3,565,420	-		DZA65_RS16455	0.83	-1.6
3,565,420	-		DZA65_RS16455	0.83	-1.9
3,565,420	-		DZA65_RS16455	0.83	+0.2
3,565,420	-		DZA65_RS16455	0.83	+0.6
3,565,478	+		DZA65_RS16455	0.86	-1.5
3,565,479	-		DZA65_RS16455	0.86	+0.1
3,565,539	-				+2.1
3,565,539	-				+0.9
3,565,616	-				+0.4
3,565,616	-				-0.4
3,565,616	-				+1.1
3,565,675	+				+0.3
3,565,675	+				+0.2
3,565,676	-				-2.3
3,565,676	-				+1.4
3,565,678	+				-0.0
3,565,678	+				-1.9
3,565,679	-				+0.6
3,565,679	-				+1.1
3,565,679	-				+1.2
3,565,679	-				+1.4
3,565,679	-				+0.0
3,565,679	-				-0.1
3,565,722	-				+0.6
3,565,733	+				+1.0
3,565,733	+				+0.4
3,565,734	-				+2.1
3,565,734	-				-2.4
3,565,753	+		DZA65_RS16460	0.14	+0.1
3,565,753	+		DZA65_RS16460	0.14	-0.1
3,565,753	+		DZA65_RS16460	0.14	+0.4
3,565,753	+		DZA65_RS16460	0.14	+0.2
3,565,754	-		DZA65_RS16460	0.14	-0.4
3,565,915	+				-1.3
3,565,915	+				-0.1
3,565,915	+				-0.8
3,565,915	+				+0.0
3,565,915	+				+0.5
3,565,916	-				+0.1
3,565,916	-				+0.8
3,565,916	-				-0.9
3,565,930	+				-0.4
3,565,930	+				+0.3
3,565,930	+				+0.1
3,565,930	+				-0.4
3,565,930	+				+3.1
3,565,930	+				+0.2
3,565,930	+				-0.4
3,565,930	+				+0.6
3,565,930	+				-2.5
3,565,930	+				+0.6
3,565,930	+				+0.6
3,565,930	+				+2.0
3,565,930	+				+1.4
3,565,930	+				-0.6
3,565,930	+				-0.7
3,565,930	+				+0.1
3,565,930	+				+0.5
3,565,930	+				+0.2
3,565,931	-				+0.4
3,565,931	-				+0.6
3,565,931	-				+0.5
3,565,931	-				+2.2
3,565,931	-				-0.1
3,565,931	-				+1.9
3,565,931	-				+0.6
3,565,931	-				+0.9
3,565,931	-				-0.1
3,565,931	-				-0.6
3,565,931	-				-0.8
3,565,931	-				+1.5
3,565,931	-				-0.9
3,565,931	-				+0.6
3,565,931	-				-0.9
3,565,931	-				+0.9
3,565,931	-				+0.5
3,565,931	-				-0.9
3,565,931	-				-0.6
3,565,931	-				+0.1
3,565,934	+				+1.7
3,565,934	+				-0.9
3,565,934	+				-0.5
3,565,934	+				-2.7
3,565,935	-				+0.6
3,565,935	-				+0.2
3,565,935	-				-0.5
3,565,935	-				+1.5
3,565,935	-				-0.9
3,565,935	-				+0.6
3,565,936	+				-1.6
3,565,936	+				-2.1
3,565,936	+				+0.9
3,565,937	-				-0.7
3,565,937	-				+0.4
3,565,937	-				+1.6
3,566,141	-				+1.0
3,566,151	+				-0.4
3,566,151	+				+0.4
3,566,152	-				+0.6
3,566,152	-				-1.2
3,566,152	-				-0.7
3,566,189	+				+1.0
3,566,189	+				+1.1
3,566,189	+				-2.4
3,566,189	+				+0.7
3,566,189	+				-1.8
3,566,189	+				-1.5
3,566,189	+				+1.6
3,566,190	-				+0.2
3,566,190	-				+1.5
3,566,190	-				+2.6
3,566,190	-				+0.8
3,566,242	+				-1.5
3,566,269	-				+0.6
3,566,392	+				-0.6
3,566,411	+				+0.2
3,566,420	+				-1.7
3,566,427	+				-1.8
3,566,427	+				-3.4
3,566,428	-				-0.7
3,566,437	-				+0.8
3,566,445	+				-1.7
3,566,445	+				+0.8
3,566,445	+				-1.5
3,566,446	-				-1.9
3,566,446	-				-0.7
3,566,492	+				+0.1
3,566,492	+				+0.5
3,566,492	+				-0.4
3,566,493	-				-0.8
3,566,493	-				-0.2
3,566,493	-				-1.5
3,566,493	-				+0.6
3,566,500	+				-0.3
3,566,500	+				-1.7
3,566,500	+				-1.2
3,566,500	+				+0.5
3,566,500	+				+0.3
3,566,500	+				-1.2
3,566,500	+				-0.6
3,566,501	-				-1.5
3,566,501	-				+0.2
3,566,501	-				+0.3
3,566,501	-				-0.3
3,566,501	-				+0.9
3,566,504	+				-1.9
3,566,504	+				-0.5
3,566,504	+				-1.4
3,566,504	+				+0.1
3,566,504	+				-1.2
3,566,505	-				-0.7
3,566,505	-				+0.4
3,566,505	-				-1.7
3,566,505	-				+1.4
3,566,505	-				+0.5
3,566,505	-				-1.7
3,566,505	-				+0.6
3,566,505	-				+0.1
3,566,505	-				+1.0
3,566,505	-				+0.7
3,566,505	-				+0.1
3,566,563	+		DZA65_RS16465	0.11	-0.6
3,566,564	-		DZA65_RS16465	0.11	-0.1
3,566,597	+		DZA65_RS16465	0.13	-1.1
3,566,611	+		DZA65_RS16465	0.14	-0.9
3,566,612	-		DZA65_RS16465	0.14	-0.9
3,566,678	+		DZA65_RS16465	0.18	-0.0
3,566,678	+		DZA65_RS16465	0.18	+0.2
3,566,678	+		DZA65_RS16465	0.18	+0.1
3,566,678	+		DZA65_RS16465	0.18	-0.6
3,566,678	+		DZA65_RS16465	0.18	+1.4
3,566,678	+		DZA65_RS16465	0.18	-0.7
3,566,679	-		DZA65_RS16465	0.19	+0.2
3,566,695	-		DZA65_RS16465	0.20	-0.8
3,566,734	+		DZA65_RS16465	0.22	-0.1
3,566,734	+		DZA65_RS16465	0.22	+0.4
3,566,734	+		DZA65_RS16465	0.22	-0.2
3,566,734	+		DZA65_RS16465	0.22	-1.7
3,566,768	-		DZA65_RS16465	0.25	+0.1
3,566,789	+		DZA65_RS16465	0.26	-0.4
3,566,789	+		DZA65_RS16465	0.26	-1.1
3,566,795	+		DZA65_RS16465	0.26	+0.4
3,566,795	+		DZA65_RS16465	0.26	+0.1
3,566,795	+		DZA65_RS16465	0.26	-1.2
3,566,795	+		DZA65_RS16465	0.26	+0.6
3,566,796	-		DZA65_RS16465	0.26	-1.2
3,566,822	+		DZA65_RS16465	0.28	+0.8
3,566,898	+		DZA65_RS16465	0.33	+0.3
3,566,898	+		DZA65_RS16465	0.33	-0.0
3,566,898	+		DZA65_RS16465	0.33	-0.9
3,566,898	+		DZA65_RS16465	0.33	+1.3
3,566,898	+		DZA65_RS16465	0.33	-0.4
3,566,899	-		DZA65_RS16465	0.33	-1.5
3,566,899	-		DZA65_RS16465	0.33	+1.2
3,566,899	-		DZA65_RS16465	0.33	+0.5
3,566,921	+		DZA65_RS16465	0.35	-1.2
3,566,922	-		DZA65_RS16465	0.35	+0.6
3,566,922	-		DZA65_RS16465	0.35	+0.4
3,566,922	-		DZA65_RS16465	0.35	+0.1
3,566,922	-		DZA65_RS16465	0.35	-0.4
3,566,922	-		DZA65_RS16465	0.35	-0.1
3,566,925	+		DZA65_RS16465	0.35	-0.2
3,566,925	+		DZA65_RS16465	0.35	-1.9
3,566,925	+		DZA65_RS16465	0.35	-0.4
3,566,925	+		DZA65_RS16465	0.35	-1.0
3,566,925	+		DZA65_RS16465	0.35	-0.2
3,566,925	+		DZA65_RS16465	0.35	+0.6
3,566,926	-		DZA65_RS16465	0.35	-2.5
3,566,926	-		DZA65_RS16465	0.35	+1.2
3,566,926	-		DZA65_RS16465	0.35	-0.4
3,566,926	-		DZA65_RS16465	0.35	-1.0
3,566,926	-		DZA65_RS16465	0.35	+0.6
3,566,940	+				-0.9
3,566,940	+		DZA65_RS16465	0.36	-1.5
3,566,941	-		DZA65_RS16465	0.36	-1.0
3,567,070	+		DZA65_RS16465	0.45	-1.8
3,567,070	+		DZA65_RS16465	0.45	-0.2
3,567,070	+		DZA65_RS16465	0.45	+0.2
3,567,071	-		DZA65_RS16465	0.45	-0.9
3,567,071	-		DZA65_RS16465	0.45	-0.3
3,567,113	+		DZA65_RS16465	0.48	-0.9
3,567,113	+		DZA65_RS16465	0.48	+0.9
3,567,200	+		DZA65_RS16465	0.54	-0.2
3,567,200	+		DZA65_RS16465	0.54	+0.0
3,567,234	+		DZA65_RS16465	0.56	-0.4
3,567,235	-		DZA65_RS16465	0.56	+0.6
3,567,264	+		DZA65_RS16465	0.58	-1.7
3,567,264	+		DZA65_RS16465	0.58	+1.6
3,567,264	+				-0.9
3,567,273	+		DZA65_RS16465	0.59	+0.6
3,567,274	-		DZA65_RS16465	0.59	-0.5
3,567,343	+		DZA65_RS16465	0.63	-2.5
3,567,353	-		DZA65_RS16465	0.64	-0.5
3,567,373	+		DZA65_RS16465	0.65	+0.6
3,567,374	-		DZA65_RS16465	0.65	-1.7
3,567,436	-		DZA65_RS16465	0.70	+0.4
3,567,458	+		DZA65_RS16465	0.71	+0.4
3,567,458	+		DZA65_RS16465	0.71	-0.2
3,567,458	+		DZA65_RS16465	0.71	+1.5
3,567,458	+		DZA65_RS16465	0.71	+0.6
3,567,458	+				+1.6
3,567,458	+		DZA65_RS16465	0.71	-0.5
3,567,458	+		DZA65_RS16465	0.71	-0.2
3,567,459	-		DZA65_RS16465	0.71	-0.1
3,567,459	-		DZA65_RS16465	0.71	-0.3
3,567,459	-		DZA65_RS16465	0.71	+0.1
3,567,459	-		DZA65_RS16465	0.71	-0.9
3,567,459	-		DZA65_RS16465	0.71	+0.7
3,567,459	-		DZA65_RS16465	0.71	+0.9
3,567,538	-		DZA65_RS16465	0.77	-0.4
3,567,544	+		DZA65_RS16465	0.77	-1.9
3,567,544	+		DZA65_RS16465	0.77	+0.2
3,567,544	+		DZA65_RS16465	0.77	+0.2
3,567,544	+		DZA65_RS16465	0.77	+1.0
3,567,579	+		DZA65_RS16465	0.79	+0.1
3,567,579	+		DZA65_RS16465	0.79	-0.5
3,567,579	+		DZA65_RS16465	0.79	-0.7
3,567,579	+		DZA65_RS16465	0.79	-0.7
3,567,579	+		DZA65_RS16465	0.79	+1.7
3,567,579	+		DZA65_RS16465	0.79	+0.4
3,567,579	+		DZA65_RS16465	0.79	-1.4
3,567,580	-		DZA65_RS16465	0.79	+0.2
3,567,580	-		DZA65_RS16465	0.79	-0.4
3,567,580	-		DZA65_RS16465	0.79	-1.2
3,567,580	-		DZA65_RS16465	0.79	-0.9
3,567,580	-		DZA65_RS16465	0.79	+0.3
3,567,580	-		DZA65_RS16465	0.79	-0.9
3,567,580	-		DZA65_RS16465	0.79	-0.4
3,567,618	+		DZA65_RS16465	0.82	-0.2
3,567,618	+		DZA65_RS16465	0.82	-0.7
3,567,619	-		DZA65_RS16465	0.82	+1.2
3,567,619	-		DZA65_RS16465	0.82	+1.8
3,567,619	-		DZA65_RS16465	0.82	+0.4
3,567,619	-		DZA65_RS16465	0.82	+0.1
3,567,642	+		DZA65_RS16465	0.84	+0.8
3,567,643	-		DZA65_RS16465	0.84	+1.4
3,567,670	-		DZA65_RS16465	0.85	-1.9
3,567,712	+		DZA65_RS16465	0.88	+0.5
3,567,713	-		DZA65_RS16465	0.88	-0.2
3,567,713	-		DZA65_RS16465	0.88	-0.6
3,567,763	+				+0.8
3,567,763	+				+0.2
3,567,764	-				+0.6
3,567,797	+				+1.3
3,567,797	+				-0.9
3,567,797	+				-3.3
3,567,861	-				+0.1
3,567,926	+				+0.6
3,567,926	+				-1.5
3,567,935	+				-0.8
3,567,951	+		DZA65_RS16470	0.11	-0.1
3,567,951	+		DZA65_RS16470	0.11	+0.4
3,567,951	+		DZA65_RS16470	0.11	+0.6
3,567,968	+		DZA65_RS16470	0.13	-1.4
3,567,969	-		DZA65_RS16470	0.13	-1.4
3,567,992	+		DZA65_RS16470	0.17	-0.4
3,567,999	-		DZA65_RS16470	0.18	-0.1
3,568,087	-		DZA65_RS16470	0.31	-0.5
3,568,087	-		DZA65_RS16470	0.31	+0.1
3,568,087	-		DZA65_RS16470	0.31	-0.9
3,568,094	+		DZA65_RS16470	0.32	+0.3
3,568,126	-		DZA65_RS16470	0.37	+0.2
3,568,126	-		DZA65_RS16470	0.37	+0.1
3,568,126	-		DZA65_RS16470	0.37	+0.2
3,568,126	-		DZA65_RS16470	0.37	-0.9
3,568,152	+		DZA65_RS16470	0.41	-0.5
3,568,175	+		DZA65_RS16470	0.45	-0.4
3,568,175	+		DZA65_RS16470	0.45	-0.4
3,568,175	+		DZA65_RS16470	0.45	-1.7
3,568,222	+		DZA65_RS16470	0.52	-0.5
3,568,222	+		DZA65_RS16470	0.52	+0.6
3,568,222	+		DZA65_RS16470	0.52	+0.1
3,568,222	+		DZA65_RS16470	0.52	-1.2
3,568,223	-		DZA65_RS16470	0.52	+0.9
3,568,223	-		DZA65_RS16470	0.52	+0.5
3,568,349	+		DZA65_RS16470	0.71	-1.1
3,568,350	-		DZA65_RS16470	0.71	+2.6
3,568,350	-		DZA65_RS16470	0.71	+0.5
3,568,382	+		DZA65_RS16470	0.76	-0.7
3,568,382	+		DZA65_RS16470	0.76	+1.2
3,568,382	+		DZA65_RS16470	0.76	-0.7
3,568,382	+		DZA65_RS16470	0.76	-0.9
3,568,383	-		DZA65_RS16470	0.76	-2.4
3,568,387	+		DZA65_RS16470	0.77	-0.6
3,568,387	+		DZA65_RS16470	0.77	-3.2
3,568,387	+		DZA65_RS16470	0.77	+0.3
3,568,387	+		DZA65_RS16470	0.77	+0.9
3,568,388	-		DZA65_RS16470	0.77	+0.1
3,568,388	-		DZA65_RS16470	0.77	+0.6
3,568,388	-		DZA65_RS16470	0.77	+0.4
3,568,388	-		DZA65_RS16470	0.77	+2.2
3,568,399	+		DZA65_RS16470	0.79	-1.2
3,568,399	+		DZA65_RS16470	0.79	-0.9
3,568,399	+		DZA65_RS16470	0.79	-1.3
3,568,399	+		DZA65_RS16470	0.79	+0.1
3,568,400	-		DZA65_RS16470	0.79	-2.5
3,568,400	-		DZA65_RS16470	0.79	-0.6
3,568,400	-		DZA65_RS16470	0.79	-0.7
3,568,400	-		DZA65_RS16470	0.79	-0.1
3,568,400	-		DZA65_RS16470	0.79	-0.1
3,568,429	+		DZA65_RS16470	0.83	+4.6
3,568,429	+		DZA65_RS16470	0.83	-0.3
3,568,436	+		DZA65_RS16470	0.84	-1.7
3,568,437	-		DZA65_RS16470	0.84	+0.6
3,568,437	-		DZA65_RS16470	0.84	-1.4
3,568,437	-		DZA65_RS16470	0.84	+0.7
3,568,468	-		DZA65_RS16470	0.89	+0.6
3,568,525	+				+0.3
3,568,526	-				-1.2
3,568,577	+				+0.9
3,568,577	+				-0.9
3,568,577	+				-0.2
3,568,577	+				+0.6
3,568,578	-				-0.5
3,568,578	-				+0.3
3,568,582	+				-0.4
3,568,599	+				-1.4
3,568,599	+				+0.1
3,568,599	+				-0.2
3,568,599	+				+1.6
3,568,599	+				+0.1
3,568,599	+				+2.0
3,568,599	+				-1.4
3,568,599	+				-1.9
3,568,599	+				-0.8
3,568,599	+				+2.4
3,568,599	+				-0.1
3,568,599	+				+0.1
3,568,599	+				+0.6
3,568,599	+				-0.3
3,568,599	+				-1.7
3,568,599	+				-0.4
3,568,600	-				+0.2
3,568,600	-				-0.7
3,568,600	-				-0.1
3,568,600	-				-0.0
3,568,600	-				+0.9
3,568,600	-				-0.9
3,568,600	-				-0.4
3,568,600	-				-0.1
3,568,600	-				-2.5
3,568,600	-				-0.2
3,568,600	-				-0.6
3,568,600	-				-1.7
3,568,600	-				-0.5
3,568,600	-				-0.2
3,568,600	-				-1.0
3,568,600	-				-1.7
3,568,644	-		DZA65_RS16475	0.22	-1.2
3,568,644	-		DZA65_RS16475	0.22	-1.7
3,568,743	+		DZA65_RS16475	0.50	+0.5
3,568,743	+		DZA65_RS16475	0.50	-0.2
3,568,743	+		DZA65_RS16475	0.50	-1.9
3,568,744	-		DZA65_RS16475	0.51	+0.1
3,568,744	-		DZA65_RS16475	0.51	-0.4
3,568,744	-		DZA65_RS16475	0.51	+0.6
3,568,744	-		DZA65_RS16475	0.51	+0.2
3,568,759	-		DZA65_RS16475	0.55	+2.0
3,568,759	-		DZA65_RS16475	0.55	-2.6
3,568,846	+		DZA65_RS16475	0.80	+1.6
3,568,846	+		DZA65_RS16475	0.80	+0.5
3,568,846	+		DZA65_RS16475	0.80	-1.2
3,568,846	+		DZA65_RS16475	0.80	-1.1
3,568,846	+		DZA65_RS16475	0.80	+0.4