Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16390

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,550,634	-		DZA65_RS16385	0.65	-0.5
3,550,635	+		DZA65_RS16385	0.65	-3.5
3,550,635	+		DZA65_RS16385	0.65	+0.7
3,550,635	+		DZA65_RS16385	0.65	+0.2
3,550,635	+		DZA65_RS16385	0.65	+0.5
3,550,635	+		DZA65_RS16385	0.65	-1.0
3,550,635	+		DZA65_RS16385	0.65	+0.1
3,550,635	+		DZA65_RS16385	0.65	+1.2
3,550,635	+		DZA65_RS16385	0.65	-0.2
3,550,636	-		DZA65_RS16385	0.65	-1.6
3,550,636	-		DZA65_RS16385	0.65	-1.0
3,550,636	-		DZA65_RS16385	0.65	+0.0
3,550,636	-		DZA65_RS16385	0.65	+0.2
3,550,636	-		DZA65_RS16385	0.65	-1.4
3,550,636	-		DZA65_RS16385	0.65	+0.0
3,550,636	-		DZA65_RS16385	0.65	+0.6
3,550,636	-		DZA65_RS16385	0.65	+0.4
3,550,636	-		DZA65_RS16385	0.65	-1.0
3,550,636	-		DZA65_RS16385	0.65	+0.1
3,550,636	-		DZA65_RS16385	0.65	-1.4
3,550,636	-		DZA65_RS16385	0.65	-0.5
3,550,661	-		DZA65_RS16385	0.66	+0.0
3,550,715	-		DZA65_RS16385	0.68	-1.0
3,550,776	+		DZA65_RS16385	0.70	-1.8
3,550,777	-		DZA65_RS16385	0.70	-0.7
3,550,912	+		DZA65_RS16385	0.76	+0.3
3,550,914	+		DZA65_RS16385	0.76	+0.3
3,550,914	+		DZA65_RS16385	0.76	-0.4
3,550,914	+		DZA65_RS16385	0.76	+0.1
3,550,914	+		DZA65_RS16385	0.76	+1.5
3,550,914	+		DZA65_RS16385	0.76	+1.2
3,550,915	-		DZA65_RS16385	0.76	-0.1
3,550,915	-		DZA65_RS16385	0.76	+0.5
3,550,915	-		DZA65_RS16385	0.76	-0.7
3,550,915	-		DZA65_RS16385	0.76	-0.6
3,550,915	-		DZA65_RS16385	0.76	-1.9
3,550,915	-		DZA65_RS16385	0.76	-0.4
3,550,915	-		DZA65_RS16385	0.76	-1.7
3,550,915	-		DZA65_RS16385	0.76	-0.5
3,550,915	-		DZA65_RS16385	0.76	+0.4
3,550,915	-		DZA65_RS16385	0.76	+0.9
3,550,915	-		DZA65_RS16385	0.76	+0.0
3,550,960	+		DZA65_RS16385	0.77	-1.0
3,550,961	-		DZA65_RS16385	0.78	+0.4
3,550,961	-		DZA65_RS16385	0.78	+0.9
3,551,020	+		DZA65_RS16385	0.80	-2.4
3,551,021	-		DZA65_RS16385	0.80	+1.6
3,551,047	+		DZA65_RS16385	0.81	+1.6
3,551,047	+		DZA65_RS16385	0.81	-2.0
3,551,047	+		DZA65_RS16385	0.81	-0.1
3,551,047	+		DZA65_RS16385	0.81	-0.0
3,551,047	+		DZA65_RS16385	0.81	+1.6
3,551,103	-		DZA65_RS16385	0.83	+0.6
3,551,127	+				-1.7
3,551,127	+		DZA65_RS16385	0.84	-2.0
3,551,128	-		DZA65_RS16385	0.84	-2.0
3,551,145	+		DZA65_RS16385	0.85	+0.2
3,551,145	+		DZA65_RS16385	0.85	-0.0
3,551,145	+		DZA65_RS16385	0.85	-0.5
3,551,145	+		DZA65_RS16385	0.85	+0.4
3,551,146	-		DZA65_RS16385	0.85	-2.2
3,551,146	-		DZA65_RS16385	0.85	-0.7
3,551,146	-		DZA65_RS16385	0.85	+1.4
3,551,146	-		DZA65_RS16385	0.85	+0.0
3,551,146	-		DZA65_RS16385	0.85	-0.2
3,551,217	-		DZA65_RS16385	0.88	+1.0
3,551,217	-		DZA65_RS16385	0.88	+0.8
3,551,217	-		DZA65_RS16385	0.88	-1.0
3,551,267	+		DZA65_RS16385	0.90	+0.1
3,551,267	+		DZA65_RS16385	0.90	+0.0
3,551,268	-		DZA65_RS16385	0.90	+2.5
3,551,268	-		DZA65_RS16385	0.90	+1.3
3,551,268	-		DZA65_RS16385	0.90	-1.7
3,551,423	-				+0.3
3,551,535	-				-0.0
3,551,535	-				+0.6
3,551,593	-				+0.6
3,551,593	-				+0.2
3,551,593	-				-1.4
3,551,593	-				+0.6
3,551,623	-				+2.2
3,551,655	+				-0.4
3,551,655	+				+0.6
3,551,673	+				-1.6
3,551,674	-				+0.3
3,551,694	+				-1.7
3,551,695	-				+0.0
3,551,751	+		DZA65_RS16390	0.13	-0.5
3,551,751	+		DZA65_RS16390	0.13	-2.8
3,551,849	-		DZA65_RS16390	0.18	-0.4
3,551,859	+		DZA65_RS16390	0.19	+0.6
3,551,860	-		DZA65_RS16390	0.19	+0.2
3,551,860	-		DZA65_RS16390	0.19	-0.6
3,551,870	+		DZA65_RS16390	0.20	-2.7
3,551,870	+		DZA65_RS16390	0.20	+2.0
3,551,870	+		DZA65_RS16390	0.20	+0.0
3,551,870	+		DZA65_RS16390	0.20	+1.0
3,551,870	+		DZA65_RS16390	0.20	-0.4
3,551,870	+		DZA65_RS16390	0.20	-1.0
3,551,870	+		DZA65_RS16390	0.20	-0.1
3,551,870	+		DZA65_RS16390	0.20	-1.4
3,551,870	+		DZA65_RS16390	0.20	-1.1
3,551,870	+		DZA65_RS16390	0.20	-0.2
3,551,870	+		DZA65_RS16390	0.20	-0.2
3,551,871	-		DZA65_RS16390	0.20	+1.2
3,551,871	-		DZA65_RS16390	0.20	-0.2
3,551,871	-		DZA65_RS16390	0.20	-2.4
3,551,871	-		DZA65_RS16390	0.20	-0.4
3,551,871	-		DZA65_RS16390	0.20	-1.5
3,551,871	-		DZA65_RS16390	0.20	+0.0
3,551,871	-		DZA65_RS16390	0.20	-0.4
3,551,871	-		DZA65_RS16390	0.20	-2.4
3,551,871	-		DZA65_RS16390	0.20	-0.7
3,551,871	-		DZA65_RS16390	0.20	-0.5
3,551,871	-		DZA65_RS16390	0.20	+0.0
3,551,871	-		DZA65_RS16390	0.20	+0.9
3,551,871	-		DZA65_RS16390	0.20	-1.0
3,551,871	-		DZA65_RS16390	0.20	+0.4
3,551,871	-		DZA65_RS16390	0.20	+0.3
3,551,881	+		DZA65_RS16390	0.20	-1.1
3,551,881	+		DZA65_RS16390	0.20	+0.6
3,551,881	+		DZA65_RS16390	0.20	-1.4
3,551,881	+		DZA65_RS16390	0.20	+1.6
3,551,882	-		DZA65_RS16390	0.20	+1.9
3,551,882	-		DZA65_RS16390	0.20	+1.0
3,551,882	-		DZA65_RS16390	0.20	-0.6
3,551,882	-		DZA65_RS16390	0.20	-0.4
3,551,882	-		DZA65_RS16390	0.20	+0.6
3,551,927	+		DZA65_RS16390	0.23	-1.4
3,551,996	-		DZA65_RS16390	0.27	+0.8
3,552,012	+		DZA65_RS16390	0.28	+1.5
3,552,013	-		DZA65_RS16390	0.28	-1.0
3,552,123	+		DZA65_RS16390	0.34	+0.2
3,552,123	+		DZA65_RS16390	0.34	-2.0
3,552,123	+		DZA65_RS16390	0.34	-0.4
3,552,123	+		DZA65_RS16390	0.34	-1.5
3,552,123	+		DZA65_RS16390	0.34	-0.4
3,552,123	+		DZA65_RS16390	0.34	-2.0
3,552,123	+		DZA65_RS16390	0.34	+0.5
3,552,123	+		DZA65_RS16390	0.34	-0.5
3,552,124	-		DZA65_RS16390	0.35	-1.0
3,552,124	-		DZA65_RS16390	0.35	-1.8
3,552,124	-		DZA65_RS16390	0.35	+2.1
3,552,124	-		DZA65_RS16390	0.35	-0.1
3,552,124	-		DZA65_RS16390	0.35	-0.3
3,552,124	-		DZA65_RS16390	0.35	+0.8
3,552,124	-		DZA65_RS16390	0.35	+0.2
3,552,142	+		DZA65_RS16390	0.36	+0.2
3,552,142	+		DZA65_RS16390	0.36	-1.2
3,552,142	+		DZA65_RS16390	0.36	+0.8
3,552,143	-		DZA65_RS16390	0.36	+0.5
3,552,143	-		DZA65_RS16390	0.36	+0.6
3,552,239	+		DZA65_RS16390	0.41	-0.2
3,552,239	+		DZA65_RS16390	0.41	-2.9
3,552,239	+		DZA65_RS16390	0.41	+0.2
3,552,240	-		DZA65_RS16390	0.41	+0.1
3,552,295	-		DZA65_RS16390	0.44	-1.7
3,552,295	-		DZA65_RS16390	0.44	+0.2
3,552,327	+		DZA65_RS16390	0.46	+0.9
3,552,328	-		DZA65_RS16390	0.46	-0.2
3,552,346	+		DZA65_RS16390	0.47	+1.0
3,552,347	-		DZA65_RS16390	0.48	-1.0
3,552,368	+		DZA65_RS16390	0.49	-0.8
3,552,369	-		DZA65_RS16390	0.49	+1.1
3,552,369	-		DZA65_RS16390	0.49	-0.1
3,552,387	+		DZA65_RS16390	0.50	-1.2
3,552,387	+		DZA65_RS16390	0.50	-3.0
3,552,388	-		DZA65_RS16390	0.50	-0.6
3,552,388	-		DZA65_RS16390	0.50	-1.4
3,552,388	-		DZA65_RS16390	0.50	+0.5
3,552,388	-		DZA65_RS16390	0.50	-0.2
3,552,388	-		DZA65_RS16390	0.50	-0.0
3,552,389	+		DZA65_RS16390	0.50	+1.0
3,552,389	+		DZA65_RS16390	0.50	-1.0
3,552,390	-		DZA65_RS16390	0.50	-1.5
3,552,390	-		DZA65_RS16390	0.50	+0.6
3,552,390	-		DZA65_RS16390	0.50	+1.0
3,552,390	-		DZA65_RS16390	0.50	-0.0
3,552,390	-		DZA65_RS16390	0.50	-0.2
3,552,390	-		DZA65_RS16390	0.50	-0.6
3,552,390	-		DZA65_RS16390	0.50	-1.4
3,552,401	+		DZA65_RS16390	0.51	-1.5
3,552,401	+		DZA65_RS16390	0.51	+0.6
3,552,401	+		DZA65_RS16390	0.51	-0.6
3,552,407	+		DZA65_RS16390	0.51	+1.0
3,552,407	+		DZA65_RS16390	0.51	+3.8
3,552,407	+		DZA65_RS16390	0.51	-1.4
3,552,408	-		DZA65_RS16390	0.51	-2.7
3,552,408	-		DZA65_RS16390	0.51	+1.0
3,552,486	+		DZA65_RS16390	0.56	+0.6
3,552,486	+		DZA65_RS16390	0.56	-0.7
3,552,486	+		DZA65_RS16390	0.56	+0.6
3,552,486	+		DZA65_RS16390	0.56	-1.4
3,552,486	+		DZA65_RS16390	0.56	-0.5
3,552,487	-		DZA65_RS16390	0.56	-0.3
3,552,487	-		DZA65_RS16390	0.56	+0.6
3,552,487	-		DZA65_RS16390	0.56	-1.7
3,552,489	+		DZA65_RS16390	0.56	+0.6
3,552,489	+		DZA65_RS16390	0.56	+1.0
3,552,489	+		DZA65_RS16390	0.56	-1.2
3,552,489	+		DZA65_RS16390	0.56	+0.6
3,552,490	-		DZA65_RS16390	0.56	-1.6
3,552,536	-		DZA65_RS16390	0.59	-3.4
3,552,572	-		DZA65_RS16390	0.61	-1.2
3,552,572	-		DZA65_RS16390	0.61	-0.1
3,552,572	-		DZA65_RS16390	0.61	+0.2
3,552,595	+		DZA65_RS16390	0.62	-0.5
3,552,595	+		DZA65_RS16390	0.62	+0.5
3,552,595	+		DZA65_RS16390	0.62	+1.4
3,552,595	+		DZA65_RS16390	0.62	-0.4
3,552,595	+		DZA65_RS16390	0.62	+0.0
3,552,596	-		DZA65_RS16390	0.62	-0.5
3,552,596	-		DZA65_RS16390	0.62	-0.0
3,552,604	+		DZA65_RS16390	0.63	+0.6
3,552,604	+		DZA65_RS16390	0.63	-1.4
3,552,605	-		DZA65_RS16390	0.63	-1.4
3,552,648	+		DZA65_RS16390	0.65	+0.4
3,552,648	+		DZA65_RS16390	0.65	-0.7
3,552,649	-		DZA65_RS16390	0.65	+0.3
3,552,929	-		DZA65_RS16390	0.81	-1.2
3,552,991	+		DZA65_RS16390	0.85	-0.5
3,552,992	-		DZA65_RS16390	0.85	-0.7
3,552,992	-		DZA65_RS16390	0.85	-1.0
3,552,992	-		DZA65_RS16390	0.85	-2.2
3,553,028	+		DZA65_RS16390	0.87	-2.0
3,553,028	+		DZA65_RS16390	0.87	-1.2
3,553,028	+		DZA65_RS16390	0.87	-0.2
3,553,077	+				-1.4
3,553,077	+				-0.3
3,553,095	+				+0.6
3,553,095	+				+0.6
3,553,095	+				-0.3
3,553,095	+				+1.1
3,553,096	-				-2.0
3,553,096	-				+0.3
3,553,140	+				+1.4
3,553,233	+				+0.4
3,553,233	+				-1.7
3,553,235	+				+0.6
3,553,236	-				-0.2
3,553,236	-				+0.5
3,553,236	-				-0.6
3,553,279	+				-1.6
3,553,279	+				+0.6
3,553,279	+				-0.4
3,553,279	+				-2.2
3,553,279	+				+0.1
3,553,279	+				-0.4
3,553,279	+				+0.6
3,553,279	+				-0.0
3,553,280	-				-0.2
3,553,280	-				-1.7
3,553,280	-				-0.6
3,553,309	+				-0.0
3,553,309	+				-1.0
3,553,310	-				+0.2
3,553,310	-				+2.2
3,553,310	-				+0.4
3,553,310	-				-1.7
3,553,314	+				-2.7
3,553,315	-				-0.4
3,553,338	+				-0.8
3,553,339	-				+0.6
3,553,339	-				-0.3
3,553,339	-				+0.1
3,553,381	+				+2.0
3,553,381	+				-1.0
3,553,381	+				-1.6
3,553,381	+				-0.4
3,553,381	+				+0.9
3,553,382	-				+0.2
3,553,382	-				-0.7
3,553,382	-				+0.0
3,553,382	-				+0.5
3,553,382	-				+0.4
3,553,382	-				-1.1
3,553,382	-				-3.0
3,553,382	-				+0.0
3,553,382	-				-1.1
3,553,382	-				+0.1
3,553,382	-				+0.3
3,553,382	-				+0.5
3,553,382	-				-0.8
3,553,382	-				-2.2
3,553,447	+				-0.4
3,553,448	-				-0.8
3,553,448	-				-0.2
3,553,448	-				-0.6
3,553,448	-				-0.4
3,553,481	+				-1.1
3,553,481	+				-0.2
3,553,537	+		DZA65_RS16395	0.11	+0.6
3,553,537	+		DZA65_RS16395	0.11	+0.4
3,553,537	+		DZA65_RS16395	0.11	-2.2
3,553,538	-		DZA65_RS16395	0.11	-1.7
3,553,538	-		DZA65_RS16395	0.11	-1.1
3,553,538	-		DZA65_RS16395	0.11	+1.0
3,553,538	-		DZA65_RS16395	0.11	+0.1
3,553,538	-		DZA65_RS16395	0.11	-1.2
3,553,583	+		DZA65_RS16395	0.13	+1.1
3,553,583	+		DZA65_RS16395	0.13	+0.8
3,553,584	-		DZA65_RS16395	0.13	+0.8
3,553,620	+		DZA65_RS16395	0.14	-0.4
3,553,651	+		DZA65_RS16395	0.15	+0.3
3,553,698	+		DZA65_RS16395	0.17	-1.0
3,553,698	+		DZA65_RS16395	0.17	+0.6
3,553,722	+		DZA65_RS16395	0.18	-0.0
3,553,765	+		DZA65_RS16395	0.20	-1.5
3,553,765	+		DZA65_RS16395	0.20	+0.9
3,553,766	-		DZA65_RS16395	0.20	+2.0
3,553,766	-		DZA65_RS16395	0.20	-1.1
3,553,766	-		DZA65_RS16395	0.20	-0.7
3,553,766	-		DZA65_RS16395	0.20	-1.4
3,553,773	+		DZA65_RS16395	0.20	+1.2
3,553,773	+		DZA65_RS16395	0.20	-0.1
3,553,773	+		DZA65_RS16395	0.20	+0.2
3,553,773	+		DZA65_RS16395	0.20	-1.4
3,553,773	+		DZA65_RS16395	0.20	-1.0
3,553,773	+		DZA65_RS16395	0.20	-2.2
3,553,773	+		DZA65_RS16395	0.20	-0.5
3,553,773	+		DZA65_RS16395	0.20	+0.3
3,553,773	+		DZA65_RS16395	0.20	-0.7
3,553,773	+		DZA65_RS16395	0.20	-1.7
3,553,774	-		DZA65_RS16395	0.20	+0.2
3,553,774	-		DZA65_RS16395	0.20	-2.0
3,553,774	-		DZA65_RS16395	0.20	+0.2
3,553,774	-		DZA65_RS16395	0.20	-0.9
3,553,774	-		DZA65_RS16395	0.20	+0.8
3,553,774	-		DZA65_RS16395	0.20	-0.5
3,553,774	-		DZA65_RS16395	0.20	-0.4
3,553,774	-		DZA65_RS16395	0.20	-2.2
3,553,774	-		DZA65_RS16395	0.20	-2.2
3,553,774	-		DZA65_RS16395	0.20	-0.1
3,553,832	+		DZA65_RS16395	0.22	+1.3
3,553,832	+		DZA65_RS16395	0.22	+0.0
3,553,858	+		DZA65_RS16395	0.23	+0.1
3,553,859	-		DZA65_RS16395	0.23	+1.6
3,553,975	+		DZA65_RS16395	0.28	+0.6
3,553,976	-		DZA65_RS16395	0.28	+0.9
3,554,046	+		DZA65_RS16395	0.30	-2.0
3,554,046	+		DZA65_RS16395	0.30	-1.0
3,554,046	+		DZA65_RS16395	0.30	-0.8
3,554,046	+		DZA65_RS16395	0.30	-0.1
3,554,047	-		DZA65_RS16395	0.31	-2.0
3,554,047	-		DZA65_RS16395	0.31	-0.4
3,554,047	-		DZA65_RS16395	0.31	+0.3
3,554,147	+		DZA65_RS16395	0.34	+0.4
3,554,147	+		DZA65_RS16395	0.34	+1.6
3,554,147	+		DZA65_RS16395	0.34	-0.7
3,554,147	+		DZA65_RS16395	0.34	+0.5
3,554,148	-		DZA65_RS16395	0.34	-2.4
3,554,148	-		DZA65_RS16395	0.34	-1.0
3,554,148	-		DZA65_RS16395	0.34	-0.4
3,554,148	-		DZA65_RS16395	0.34	-0.8
3,554,148	-		DZA65_RS16395	0.34	+1.0
3,554,148	-		DZA65_RS16395	0.34	-0.4
3,554,148	-		DZA65_RS16395	0.34	+1.6
3,554,148	-		DZA65_RS16395	0.34	-2.3
3,554,148	-		DZA65_RS16395	0.34	+2.0
3,554,205	+		DZA65_RS16395	0.37	-0.7
3,554,205	+		DZA65_RS16395	0.37	+2.4
3,554,205	+		DZA65_RS16395	0.37	+0.3
3,554,205	+		DZA65_RS16395	0.37	+0.2
3,554,206	-		DZA65_RS16395	0.37	+0.1
3,554,206	-		DZA65_RS16395	0.37	+0.6