Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16195

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,512,405	+		DZA65_RS16190	0.15	+0.6
3,512,434	+		DZA65_RS16190	0.18	+1.6
3,512,434	+		DZA65_RS16190	0.18	+0.9
3,512,434	+		DZA65_RS16190	0.18	+0.4
3,512,435	-		DZA65_RS16190	0.18	-0.8
3,512,435	-		DZA65_RS16190	0.18	-1.4
3,512,438	+		DZA65_RS16190	0.18	+1.1
3,512,438	+		DZA65_RS16190	0.18	-1.1
3,512,439	-		DZA65_RS16190	0.18	-0.3
3,512,439	-		DZA65_RS16190	0.18	-1.0
3,512,443	+		DZA65_RS16190	0.19	+0.2
3,512,443	+		DZA65_RS16190	0.19	-0.4
3,512,547	+		DZA65_RS16190	0.30	-0.6
3,512,562	-		DZA65_RS16190	0.31	+0.3
3,512,576	+		DZA65_RS16190	0.33	-0.1
3,512,577	-		DZA65_RS16190	0.33	+0.6
3,512,597	+		DZA65_RS16190	0.35	+0.8
3,512,598	-		DZA65_RS16190	0.35	-0.0
3,512,598	-		DZA65_RS16190	0.35	-1.8
3,512,598	-		DZA65_RS16190	0.35	-0.3
3,512,802	-		DZA65_RS16190	0.56	+0.7
3,512,802	-		DZA65_RS16190	0.56	+0.6
3,512,802	-		DZA65_RS16190	0.56	-0.1
3,512,835	-		DZA65_RS16190	0.60	-0.4
3,512,835	-		DZA65_RS16190	0.60	+1.6
3,512,950	+		DZA65_RS16190	0.72	+0.4
3,512,951	-				+2.4
3,512,951	-		DZA65_RS16190	0.72	-1.4
3,513,035	+		DZA65_RS16190	0.80	-0.6
3,513,036	-		DZA65_RS16190	0.80	+0.3
3,513,050	+				-1.4
3,513,050	+		DZA65_RS16190	0.82	-0.1
3,513,050	+		DZA65_RS16190	0.82	+1.2
3,513,051	-		DZA65_RS16190	0.82	-2.2
3,513,051	-		DZA65_RS16190	0.82	+0.8
3,513,051	-		DZA65_RS16190	0.82	+0.3
3,513,051	-		DZA65_RS16190	0.82	-1.1
3,513,104	+		DZA65_RS16190	0.88	-0.4
3,513,104	+		DZA65_RS16190	0.88	-0.7
3,513,107	+		DZA65_RS16190	0.88	-0.4
3,513,107	+		DZA65_RS16190	0.88	-2.4
3,513,107	+		DZA65_RS16190	0.88	+1.1
3,513,107	+		DZA65_RS16190	0.88	-2.0
3,513,107	+		DZA65_RS16190	0.88	+1.6
3,513,107	+		DZA65_RS16190	0.88	-0.7
3,513,108	-		DZA65_RS16190	0.88	-1.0
3,513,108	-		DZA65_RS16190	0.88	+0.6
3,513,108	-		DZA65_RS16190	0.88	-1.0
3,513,108	-		DZA65_RS16190	0.88	-0.9
3,513,108	-		DZA65_RS16190	0.88	+0.1
3,513,108	-		DZA65_RS16190	0.88	-1.3
3,513,108	-		DZA65_RS16190	0.88	-1.4
3,513,108	-		DZA65_RS16190	0.88	-0.1
3,513,108	-		DZA65_RS16190	0.88	-2.2
3,513,275	+				-2.5
3,513,275	+				+1.0
3,513,276	-				+0.1
3,513,276	-				-0.5
3,513,276	-				-0.4
3,513,276	-				+0.6
3,513,281	+				-0.6
3,513,282	-				+0.4
3,513,282	-				-1.4
3,513,282	-				+3.4
3,513,336	+				+0.2
3,513,353	-				+0.6
3,513,421	+				-2.0
3,513,421	+				-1.0
3,513,421	+				-1.4
3,513,421	+				-2.2
3,513,421	+				-0.1
3,513,421	+				+0.0
3,513,422	-				-0.2
3,513,449	+				+1.6
3,513,486	+				-0.1
3,513,487	-				+0.0
3,513,591	+		DZA65_RS16195	0.14	+0.5
3,513,602	+		DZA65_RS16195	0.14	-0.7
3,513,682	+		DZA65_RS16195	0.20	+2.7
3,513,949	-		DZA65_RS16195	0.40	-3.1
3,513,949	-		DZA65_RS16195	0.40	-1.1
3,513,949	-		DZA65_RS16195	0.40	-2.0
3,513,949	-		DZA65_RS16195	0.40	+1.0
3,513,950	+		DZA65_RS16195	0.40	+1.3
3,513,951	-		DZA65_RS16195	0.40	-0.7
3,513,951	-		DZA65_RS16195	0.40	-0.2
3,513,951	-		DZA65_RS16195	0.40	+1.8
3,513,951	-		DZA65_RS16195	0.40	+0.6
3,514,005	+		DZA65_RS16195	0.44	+0.9
3,514,005	+		DZA65_RS16195	0.44	-1.0
3,514,006	-		DZA65_RS16195	0.44	-0.1
3,514,006	-		DZA65_RS16195	0.44	+0.2
3,514,006	-		DZA65_RS16195	0.44	+0.8
3,514,006	-		DZA65_RS16195	0.44	+0.6
3,514,048	+		DZA65_RS16195	0.47	+0.2
3,514,048	+		DZA65_RS16195	0.47	-1.5
3,514,048	+		DZA65_RS16195	0.47	+0.3
3,514,049	-		DZA65_RS16195	0.47	-0.1
3,514,049	-		DZA65_RS16195	0.47	-1.2
3,514,049	-		DZA65_RS16195	0.47	+1.3
3,514,049	-				-0.4
3,514,049	-		DZA65_RS16195	0.47	-0.6
3,514,170	+		DZA65_RS16195	0.56	+0.8
3,514,170	+		DZA65_RS16195	0.56	-0.5
3,514,170	+		DZA65_RS16195	0.56	+0.8
3,514,170	+		DZA65_RS16195	0.56	-0.5
3,514,170	+		DZA65_RS16195	0.56	-0.1
3,514,170	+		DZA65_RS16195	0.56	+1.2
3,514,171	-		DZA65_RS16195	0.56	+0.0
3,514,171	-		DZA65_RS16195	0.56	+0.6
3,514,171	-		DZA65_RS16195	0.56	-0.5
3,514,171	-		DZA65_RS16195	0.56	+0.4
3,514,171	-		DZA65_RS16195	0.56	-1.7
3,514,171	-		DZA65_RS16195	0.56	+2.0
3,514,171	-		DZA65_RS16195	0.56	-1.4
3,514,171	-		DZA65_RS16195	0.56	-1.2
3,514,203	+		DZA65_RS16195	0.58	+0.9
3,514,203	+		DZA65_RS16195	0.58	-0.4
3,514,203	+		DZA65_RS16195	0.58	+0.6
3,514,203	+		DZA65_RS16195	0.58	-1.5
3,514,203	+		DZA65_RS16195	0.58	+0.6
3,514,203	+		DZA65_RS16195	0.58	-1.4
3,514,203	+		DZA65_RS16195	0.58	+1.1
3,514,203	+		DZA65_RS16195	0.58	-0.7
3,514,203	+		DZA65_RS16195	0.58	-0.6
3,514,203	+		DZA65_RS16195	0.58	-0.4
3,514,203	+		DZA65_RS16195	0.58	-0.5
3,514,203	+		DZA65_RS16195	0.58	+0.0
3,514,203	+		DZA65_RS16195	0.58	+1.1
3,514,204	-		DZA65_RS16195	0.58	-0.0
3,514,204	-		DZA65_RS16195	0.58	+0.3
3,514,204	-		DZA65_RS16195	0.58	-2.0
3,514,204	-		DZA65_RS16195	0.58	+2.3
3,514,204	-		DZA65_RS16195	0.58	-1.4
3,514,204	-		DZA65_RS16195	0.58	+0.9
3,514,204	-		DZA65_RS16195	0.58	+0.3
3,514,204	-		DZA65_RS16195	0.58	+1.0
3,514,204	-		DZA65_RS16195	0.58	-0.1
3,514,204	-		DZA65_RS16195	0.58	-0.4
3,514,204	-		DZA65_RS16195	0.58	+0.4
3,514,305	+				+0.6
3,514,305	+		DZA65_RS16195	0.65	+1.6
3,514,305	+		DZA65_RS16195	0.65	-1.0
3,514,305	+		DZA65_RS16195	0.65	-0.4
3,514,305	+		DZA65_RS16195	0.65	+1.1
3,514,306	-		DZA65_RS16195	0.65	-0.2
3,514,306	-		DZA65_RS16195	0.65	-0.5
3,514,306	-		DZA65_RS16195	0.65	-2.8
3,514,309	-		DZA65_RS16195	0.66	+1.1
3,514,309	-		DZA65_RS16195	0.66	-1.7
3,514,309	-		DZA65_RS16195	0.66	+0.4
3,514,309	-		DZA65_RS16195	0.66	-0.1
3,514,309	-		DZA65_RS16195	0.66	-1.2
3,514,330	+		DZA65_RS16195	0.67	-0.8
3,514,330	+		DZA65_RS16195	0.67	+2.6
3,514,331	-		DZA65_RS16195	0.67	-1.0
3,514,331	-		DZA65_RS16195	0.67	+1.2
3,514,331	-		DZA65_RS16195	0.67	-0.4
3,514,331	-		DZA65_RS16195	0.67	+0.8
3,514,331	-		DZA65_RS16195	0.67	-0.0
3,514,333	-		DZA65_RS16195	0.67	-0.6
3,514,458	+		DZA65_RS16195	0.76	-1.4
3,514,467	+		DZA65_RS16195	0.77	-0.4
3,514,467	+		DZA65_RS16195	0.77	-2.4
3,514,467	+		DZA65_RS16195	0.77	-0.2
3,514,467	+		DZA65_RS16195	0.77	-0.4
3,514,468	-		DZA65_RS16195	0.77	+0.3
3,514,473	+		DZA65_RS16195	0.78	+0.2
3,514,689	+				-0.3
3,514,689	+				-0.7
3,514,689	+				+0.6
3,514,689	+				-1.0
3,514,690	-				+0.5
3,514,690	-				+0.2
3,514,690	-				+0.0
3,514,722	+				+2.2
3,514,723	-				+0.4
3,514,740	-				-0.4
3,514,764	-				+0.5
3,514,848	+				-0.4
3,514,848	+				-0.1
3,514,859	+				-0.2
3,514,859	+				+0.5
3,514,859	+				-2.5
3,514,859	+				+1.2
3,514,859	+				+2.8
3,514,859	+				-0.0
3,514,859	+				-0.9
3,514,859	+				+0.9
3,514,859	+				+0.0
3,514,860	-				+0.5
3,514,864	+				-1.4
3,514,898	+				-0.6
3,514,898	+				-0.2
3,514,898	+				+0.6
3,514,899	-				+0.9
3,514,899	-				+2.1
3,514,899	-				-1.2
3,514,899	-				-0.1
3,514,902	+				-0.4
3,514,902	+				-0.4
3,514,902	+				+0.5
3,514,902	+				+0.6
3,514,902	+				-1.4
3,514,902	+				+1.4
3,514,902	+				-1.2
3,514,902	+				+1.2
3,514,902	+				-2.4
3,514,903	-				-0.4
3,514,903	-				+0.4
3,514,903	-				-2.0
3,514,903	-				-1.9
3,514,903	-				-1.0
3,514,907	+				+1.4
3,514,907	+				+1.6
3,514,908	-				-0.3
3,514,910	+				+0.9
3,514,910	+				-1.7
3,514,911	-				+1.7
3,514,911	-				+0.8
3,514,911	-				-2.4
3,515,000	+				+0.3
3,515,000	+				-0.4
3,515,000	+				-1.7
3,515,001	-				-0.1
3,515,001	-				+1.1
3,515,036	+		DZA65_RS16200	0.17	+1.0
3,515,036	+		DZA65_RS16200	0.17	+0.6
3,515,037	-		DZA65_RS16200	0.17	-0.6
3,515,037	-		DZA65_RS16200	0.17	+0.1
3,515,037	-		DZA65_RS16200	0.17	+0.0
3,515,040	+		DZA65_RS16200	0.18	-0.8
3,515,040	+		DZA65_RS16200	0.18	-0.9
3,515,041	-		DZA65_RS16200	0.18	-0.8
3,515,041	-		DZA65_RS16200	0.18	-0.1
3,515,041	-		DZA65_RS16200	0.18	+0.4
3,515,041	-		DZA65_RS16200	0.18	-1.2
3,515,041	-		DZA65_RS16200	0.18	+0.5
3,515,041	-		DZA65_RS16200	0.18	-1.5
3,515,041	-		DZA65_RS16200	0.18	-0.5
3,515,041	-		DZA65_RS16200	0.18	-0.2
3,515,046	+		DZA65_RS16200	0.20	+0.6
3,515,062	-		DZA65_RS16200	0.24	-0.6
3,515,062	-		DZA65_RS16200	0.24	-1.2
3,515,062	-		DZA65_RS16200	0.24	-0.2
3,515,068	+		DZA65_RS16200	0.25	-1.2
3,515,068	+		DZA65_RS16200	0.25	-0.1
3,515,068	+		DZA65_RS16200	0.25	-1.4
3,515,068	+		DZA65_RS16200	0.25	+0.3
3,515,068	+		DZA65_RS16200	0.25	-0.1
3,515,069	-		DZA65_RS16200	0.25	+0.8
3,515,069	-		DZA65_RS16200	0.25	+0.4
3,515,069	-		DZA65_RS16200	0.25	+0.6
3,515,069	-		DZA65_RS16200	0.25	-1.0
3,515,105	+		DZA65_RS16200	0.34	+0.9
3,515,105	+		DZA65_RS16200	0.34	+0.4
3,515,106	-		DZA65_RS16200	0.34	+0.1
3,515,106	-		DZA65_RS16200	0.34	-0.1
3,515,106	-		DZA65_RS16200	0.34	-0.2
3,515,115	-		DZA65_RS16200	0.37	+0.6
3,515,115	-		DZA65_RS16200	0.37	-1.4
3,515,115	-		DZA65_RS16200	0.37	-2.0
3,515,147	+		DZA65_RS16200	0.44	+0.9
3,515,148	-		DZA65_RS16200	0.45	-0.3
3,515,186	+		DZA65_RS16200	0.54	+0.1
3,515,213	+		DZA65_RS16200	0.61	+0.0
3,515,213	+		DZA65_RS16200	0.61	+1.2
3,515,213	+		DZA65_RS16200	0.61	-0.8
3,515,213	+		DZA65_RS16200	0.61	+0.8
3,515,213	+		DZA65_RS16200	0.61	+0.8
3,515,213	+		DZA65_RS16200	0.61	-0.4
3,515,214	-		DZA65_RS16200	0.61	-1.1
3,515,214	-		DZA65_RS16200	0.61	+0.4
3,515,214	-		DZA65_RS16200	0.61	-0.2
3,515,214	-		DZA65_RS16200	0.61	+0.0
3,515,214	-		DZA65_RS16200	0.61	-0.5
3,515,214	-		DZA65_RS16200	0.61	-0.2
3,515,323	+		DZA65_RS16200	0.88	+0.3
3,515,324	-		DZA65_RS16200	0.88	-1.7
3,515,340	+				-0.4
3,515,533	+				-1.4
3,515,540	+				+0.6
3,515,540	+				+0.0
3,515,541	-				-0.5
3,515,541	-				-1.5
3,515,561	+				+0.9
3,515,562	-				+0.6
3,515,602	+				-1.8
3,515,602	+				-1.0
3,515,730	+		DZA65_RS16205	0.25	+0.2
3,515,730	+		DZA65_RS16205	0.25	+0.6
3,515,731	-		DZA65_RS16205	0.25	+0.8
3,515,731	-		DZA65_RS16205	0.25	+1.0
3,515,731	-		DZA65_RS16205	0.25	+2.0