Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16085

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,484,819	+		DZA65_RS16075	0.13	+0.2
3,484,819	+		DZA65_RS16075	0.13	+0.1
3,484,820	-		DZA65_RS16075	0.13	+0.4
3,484,855	+		DZA65_RS16075	0.19	-2.2
3,484,855	+		DZA65_RS16075	0.19	-0.1
3,484,855	+		DZA65_RS16075	0.19	+1.4
3,484,855	+		DZA65_RS16075	0.19	+0.6
3,484,856	-		DZA65_RS16075	0.20	-0.4
3,484,856	-		DZA65_RS16075	0.20	-0.3
3,484,907	-		DZA65_RS16075	0.29	+0.6
3,484,923	-		DZA65_RS16075	0.32	+1.3
3,484,935	+		DZA65_RS16075	0.34	-0.0
3,484,977	+		DZA65_RS16075	0.42	+0.9
3,484,978	-		DZA65_RS16075	0.42	-0.1
3,484,978	-		DZA65_RS16075	0.42	+0.8
3,485,003	-		DZA65_RS16075	0.47	-0.2
3,485,003	-		DZA65_RS16075	0.47	-0.1
3,485,053	-		DZA65_RS16075	0.56	+0.2
3,485,085	-		DZA65_RS16075	0.62	-0.4
3,485,221	+		DZA65_RS16075	0.88	-0.3
3,485,221	+		DZA65_RS16075	0.88	+0.2
3,485,221	+		DZA65_RS16075	0.88	+0.2
3,485,222	-		DZA65_RS16075	0.88	+1.8
3,485,222	-		DZA65_RS16075	0.88	-0.1
3,485,222	-		DZA65_RS16075	0.88	-0.5
3,485,222	-		DZA65_RS16075	0.88	+1.2
3,485,222	-		DZA65_RS16075	0.88	+0.6
3,485,276	+				-2.4
3,485,276	+				-0.4
3,485,276	+				-1.2
3,485,276	+				+0.0
3,485,277	-				-1.7
3,485,277	-				+0.5
3,485,277	-				-0.5
3,485,277	-				-0.7
3,485,277	-				-2.5
3,485,319	+				-1.0
3,485,319	+				+0.8
3,485,320	-				+0.6
3,485,324	+				+0.9
3,485,324	+				+2.9
3,485,324	+				+0.1
3,485,324	+				+0.5
3,485,324	+				+0.8
3,485,325	-				+0.6
3,485,325	-				-1.0
3,485,325	-				-0.1
3,485,325	-				+1.8
3,485,325	-				+1.0
3,485,325	-				-1.5
3,485,325	-				-1.0
3,485,325	-				+0.5
3,485,349	+				-2.2
3,485,349	+				+0.0
3,485,349	+				+0.9
3,485,350	-				-1.7
3,485,353	+				+0.6
3,485,353	+				+0.6
3,485,353	+				-1.4
3,485,353	+				-0.4
3,485,353	+				-0.9
3,485,353	+				+0.0
3,485,353	+				+0.0
3,485,353	+				-2.0
3,485,354	-				-0.2
3,485,354	-				+1.3
3,485,354	-				+0.2
3,485,354	-				+0.6
3,485,421	-				+0.0
3,485,421	-				-0.1
3,485,664	+				+1.1
3,485,675	-				+0.1
3,485,675	-				-0.1
3,485,688	+				+1.1
3,485,688	+				+0.2
3,485,688	+				+0.6
3,485,689	-				+0.8
3,485,689	-				-1.5
3,485,689	-				-1.1
3,485,693	+				-1.7
3,485,694	-				-0.6
3,485,702	+				+0.6
3,485,702	+				-1.3
3,485,702	+				+0.0
3,485,702	+				+0.8
3,485,702	+				-3.8
3,485,703	-				-1.0
3,485,703	-				+0.5
3,485,703	-				-0.6
3,485,703	-				-1.4
3,485,706	+				+0.4
3,485,706	+				+0.2
3,485,706	+				+0.6
3,485,707	-				+1.4
3,485,707	-				-0.5
3,485,707	-				-0.8
3,485,707	-				+0.6
3,485,707	-				-0.4
3,485,707	-				-2.0
3,485,707	-				+0.0
3,485,707	-				+0.6
3,485,715	+				+0.1
3,485,722	+				+0.8
3,485,722	+				+0.5
3,485,722	+				+0.3
3,485,722	+				+0.5
3,485,722	+				-0.1
3,485,722	+				-0.4
3,485,723	-				-0.4
3,485,723	-				-0.1
3,485,723	-				-0.6
3,485,737	-				-0.2
3,485,753	+				+0.5
3,485,770	-				+0.5
3,485,772	+				+2.1
3,485,772	+				+1.0
3,485,773	-				-1.4
3,485,784	+				-1.3
3,485,784	+				-0.4
3,485,785	-				-1.2
3,485,785	-				-2.2
3,485,785	-				+2.0
3,485,785	-				+1.4
3,485,785	-				-0.0
3,485,826	+				+0.7
3,485,826	+				-0.2
3,485,827	-				+0.2
3,485,831	+				-0.6
3,485,831	+				+2.2
3,485,831	+				+0.6
3,485,831	+				-0.8
3,485,831	+				-1.0
3,485,831	+				-0.5
3,485,831	+				-0.1
3,485,832	-				+0.5
3,485,832	-				-3.0
3,485,832	-				-0.5
3,485,832	-				-0.1
3,485,838	+				+0.4
3,485,838	+				-1.4
3,485,838	+				-0.1
3,485,839	-		DZA65_RS16085	0.10	-1.3
3,485,839	-		DZA65_RS16085	0.10	+1.8
3,485,839	-		DZA65_RS16085	0.10	-0.4
3,485,839	-		DZA65_RS16085	0.10	-0.1
3,485,839	-		DZA65_RS16085	0.10	+0.1
3,485,839	-		DZA65_RS16085	0.10	-1.4
3,485,841	+		DZA65_RS16085	0.10	+1.0
3,485,841	+		DZA65_RS16085	0.10	-0.4
3,485,842	-		DZA65_RS16085	0.10	-0.2
3,485,842	-		DZA65_RS16085	0.10	+0.7
3,485,845	+		DZA65_RS16085	0.11	-0.3
3,485,845	+		DZA65_RS16085	0.11	+1.2
3,485,846	-				+1.4
3,485,846	-		DZA65_RS16085	0.11	+0.2
3,485,951	-		DZA65_RS16085	0.27	-1.7
3,485,971	+		DZA65_RS16085	0.30	+1.3
3,485,971	+		DZA65_RS16085	0.30	+0.8
3,485,971	+		DZA65_RS16085	0.30	-0.5
3,485,971	+		DZA65_RS16085	0.30	-0.9
3,485,972	-		DZA65_RS16085	0.30	+0.3
3,485,972	-		DZA65_RS16085	0.30	-0.2
3,485,972	-		DZA65_RS16085	0.30	+1.5
3,486,028	-		DZA65_RS16085	0.39	+4.7
3,486,034	+		DZA65_RS16085	0.40	-0.1
3,486,034	+		DZA65_RS16085	0.40	+0.6
3,486,035	-		DZA65_RS16085	0.40	-0.6
3,486,035	-		DZA65_RS16085	0.40	+0.8
3,486,037	-		DZA65_RS16085	0.40	-0.4
3,486,053	+		DZA65_RS16085	0.42	+0.4
3,486,053	+		DZA65_RS16085	0.42	-2.6
3,486,053	+		DZA65_RS16085	0.42	-0.6
3,486,054	-		DZA65_RS16085	0.43	+0.0
3,486,054	-		DZA65_RS16085	0.43	-0.5
3,486,087	+		DZA65_RS16085	0.48	+0.6
3,486,087	+		DZA65_RS16085	0.48	+0.6
3,486,088	-		DZA65_RS16085	0.48	+0.6
3,486,088	-		DZA65_RS16085	0.48	-1.4
3,486,139	+		DZA65_RS16085	0.55	-0.4
3,486,277	-		DZA65_RS16085	0.76	+0.3
3,486,277	-		DZA65_RS16085	0.76	+0.6
3,486,277	-		DZA65_RS16085	0.76	-0.7
3,486,312	+		DZA65_RS16085	0.82	+0.1
3,486,312	+		DZA65_RS16085	0.82	+0.0
3,486,312	+		DZA65_RS16085	0.82	-1.2
3,486,312	+		DZA65_RS16085	0.82	+1.6
3,486,312	+		DZA65_RS16085	0.82	+0.1
3,486,312	+		DZA65_RS16085	0.82	-0.7
3,486,313	-		DZA65_RS16085	0.82	+0.8
3,486,313	-		DZA65_RS16085	0.82	+0.3
3,486,313	-		DZA65_RS16085	0.82	-1.1
3,486,343	+		DZA65_RS16085	0.86	+0.6
3,486,343	+		DZA65_RS16085	0.86	-0.8
3,486,343	+		DZA65_RS16085	0.86	-0.4
3,486,343	+		DZA65_RS16085	0.86	-0.8
3,486,344	-		DZA65_RS16085	0.87	+1.2
3,486,344	-		DZA65_RS16085	0.87	+1.2
3,486,344	-		DZA65_RS16085	0.87	+0.3
3,486,344	-		DZA65_RS16085	0.87	-4.0
3,486,344	-		DZA65_RS16085	0.87	+0.0
3,486,344	-		DZA65_RS16085	0.87	+0.6
3,486,344	-		DZA65_RS16085	0.87	-0.2
3,486,367	+				-0.4
3,486,367	+				-0.0
3,486,367	+				-0.1
3,486,367	+				+0.4
3,486,367	+				-1.4
3,486,367	+				-0.8
3,486,367	+				-0.4
3,486,367	+				-0.1
3,486,368	-				-0.4
3,486,368	-				+0.4
3,486,368	-				-1.7
3,486,368	-				+0.3
3,486,368	-				-0.0
3,486,368	-				-0.6
3,486,379	+				-0.1
3,486,379	+				-0.6
3,486,379	+				+0.1
3,486,379	+				-1.7
3,486,380	-				-1.7
3,486,380	-				+0.7
3,486,380	-				-0.4
3,486,380	-				-1.5
3,486,380	-				+0.3
3,486,380	-				+0.4
3,486,451	+				-0.1
3,486,514	+				+0.0
3,486,549	+				+0.9
3,486,554	+				+1.5
3,486,554	+				+0.0
3,486,554	+				-1.0
3,486,555	-				+0.2
3,486,574	-				+0.0
3,486,574	-				-1.2
3,486,584	+				+1.9
3,486,584	+				+0.6
3,486,584	+				+0.6
3,486,584	+				+2.8
3,486,584	+				-0.1
3,486,584	+				+0.3
3,486,584	+				+0.1
3,486,584	+				+1.1
3,486,584	+				+0.4
3,486,584	+				+0.2
3,486,584	+				+0.1
3,486,584	+				-1.0
3,486,585	-				-0.5
3,486,585	-				-1.0
3,486,585	-				+0.6
3,486,585	-				-1.4
3,486,585	-				+0.0
3,486,589	+				-0.6
3,486,590	-				-2.2
3,486,590	-				-0.4
3,486,590	-				-1.6
3,486,590	-				-1.7
3,486,630	+		DZA65_RS16090	0.14	-2.2
3,486,837	+		DZA65_RS16090	0.76	-2.7
3,486,946	-				+0.0
3,486,991	-		DZA65_RS16095	0.22	-0.4
3,487,033	+		DZA65_RS16095	0.37	-0.5
3,487,034	-		DZA65_RS16095	0.37	+0.2
3,487,045	+		DZA65_RS16095	0.41	+0.6
3,487,046	-		DZA65_RS16095	0.41	+0.6
3,487,046	-		DZA65_RS16095	0.41	+0.3
3,487,106	+		DZA65_RS16095	0.63	+0.5
3,487,106	+		DZA65_RS16095	0.63	+0.3
3,487,107	-		DZA65_RS16095	0.63	+0.0
3,487,107	-		DZA65_RS16095	0.63	+1.3
3,487,148	+		DZA65_RS16095	0.78	+2.2
3,487,179	-		DZA65_RS16095	0.89	-1.3
3,487,192	+				+1.0
3,487,193	-				+0.0
3,487,236	-				+0.2
3,487,242	+				+0.8
3,487,242	+				-1.7
3,487,243	-				-2.5
3,487,243	-				-0.6
3,487,243	-				-0.4
3,487,288	+				-0.4
3,487,288	+				+0.5
3,487,288	+				-0.4
3,487,288	+				+0.1
3,487,288	+				+0.8
3,487,288	+				-0.6
3,487,288	+				-0.2
3,487,289	-				-1.5
3,487,289	-				-1.7
3,487,289	-				+0.9
3,487,289	-				-0.1
3,487,289	-				+0.1
3,487,291	+				-1.1
3,487,291	+				+0.3
3,487,291	+				+1.5
3,487,292	-				+0.5
3,487,292	-				+0.1
3,487,294	+				+0.6
3,487,294	+				-0.1
3,487,295	-				-1.4
3,487,295	-				-1.0
3,487,295	-				+0.4
3,487,295	-				-1.7
3,487,382	+				+1.6
3,487,382	+				-0.6
3,487,382	+				-0.1
3,487,382	+				+1.6
3,487,382	+				+0.1
3,487,383	-				-1.3
3,487,383	-				+1.0
3,487,383	-				+0.0
3,487,383	-				-0.1
3,487,383	-				+1.2
3,487,383	-				-1.0
3,487,383	-				+0.9
3,487,383	-				-0.7
3,487,383	-				-3.1
3,487,383	-				+0.0
3,487,383	-				+0.6
3,487,383	-				+0.3
3,487,387	+				-2.6
3,487,387	+				+0.4
3,487,387	+				-0.2
3,487,387	+				-0.5
3,487,387	+				-2.1
3,487,388	-				-0.2
3,487,388	-				-0.2
3,487,388	-				+0.3
3,487,388	-				-2.2
3,487,388	-				+0.2
3,487,388	-				-1.2
3,487,394	+				+0.3
3,487,394	+				-0.4
3,487,394	+				+1.3
3,487,395	-				-0.8
3,487,395	-				+0.6
3,487,413	+				+0.4
3,487,413	+				-1.8
3,487,414	-				+3.0
3,487,414	-				+0.1
3,487,414	-				-1.4
3,487,419	+				-0.7
3,487,419	+				-2.4
3,487,419	+				-0.5
3,487,419	+				+0.6
3,487,420	-				+1.3
3,487,420	-				+0.1
3,487,420	-				+0.8
3,487,425	+				+1.2
3,487,425	+				+0.9
3,487,425	+				-0.1
3,487,426	-				-0.8