Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15440

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,347,164	-		DZA65_RS15435	0.43	-0.2
3,347,210	+		DZA65_RS15435	0.46	-2.0
3,347,210	+		DZA65_RS15435	0.46	-1.6
3,347,210	+		DZA65_RS15435	0.46	-0.4
3,347,211	-		DZA65_RS15435	0.46	-0.4
3,347,211	-		DZA65_RS15435	0.46	-0.4
3,347,211	-				+0.6
3,347,211	-		DZA65_RS15435	0.46	+0.2
3,347,242	-		DZA65_RS15435	0.49	+1.1
3,347,305	+		DZA65_RS15435	0.53	+0.0
3,347,305	+		DZA65_RS15435	0.53	+0.0
3,347,305	+		DZA65_RS15435	0.53	-1.6
3,347,334	+		DZA65_RS15435	0.55	-0.6
3,347,391	+		DZA65_RS15435	0.59	+2.4
3,347,401	+		DZA65_RS15435	0.60	+0.7
3,347,656	+		DZA65_RS15435	0.78	+1.5
3,347,656	+		DZA65_RS15435	0.78	-0.2
3,347,657	-		DZA65_RS15435	0.78	+0.0
3,347,657	-		DZA65_RS15435	0.78	-2.4
3,347,657	-		DZA65_RS15435	0.78	+1.4
3,347,720	+		DZA65_RS15435	0.82	-0.3
3,347,720	+		DZA65_RS15435	0.82	+0.4
3,347,720	+		DZA65_RS15435	0.82	-2.4
3,347,720	+		DZA65_RS15435	0.82	-1.7
3,347,720	+		DZA65_RS15435	0.82	-0.2
3,347,720	+		DZA65_RS15435	0.82	+1.2
3,347,720	+		DZA65_RS15435	0.82	-1.4
3,347,720	+		DZA65_RS15435	0.82	+1.6
3,347,720	+		DZA65_RS15435	0.82	+0.3
3,347,720	+		DZA65_RS15435	0.82	+2.6
3,347,720	+		DZA65_RS15435	0.82	-1.7
3,347,720	+		DZA65_RS15435	0.82	+0.6
3,347,721	-		DZA65_RS15435	0.82	-2.0
3,347,721	-		DZA65_RS15435	0.82	-0.7
3,347,721	-		DZA65_RS15435	0.82	+0.4
3,347,721	-		DZA65_RS15435	0.82	-0.6
3,347,721	-		DZA65_RS15435	0.82	+0.6
3,347,760	+				+2.4
3,347,761	-		DZA65_RS15435	0.85	+0.5
3,347,761	-		DZA65_RS15435	0.85	-2.0
3,347,761	-		DZA65_RS15435	0.85	-0.4
3,347,780	+		DZA65_RS15435	0.87	+0.8
3,347,781	-		DZA65_RS15435	0.87	+0.4
3,347,781	-		DZA65_RS15435	0.87	+0.1
3,347,831	+				-0.4
3,347,831	+				-0.6
3,347,831	+				-1.0
3,347,832	-				-0.2
3,347,832	-				-0.1
3,347,832	-				-0.8
3,347,860	+				+0.0
3,347,932	+				-0.0
3,348,123	-				-0.2
3,348,132	+				+0.6
3,348,299	+		DZA65_RS15440	0.15	+1.1
3,348,299	+		DZA65_RS15440	0.15	+0.0
3,348,300	-		DZA65_RS15440	0.15	+0.6
3,348,330	+		DZA65_RS15440	0.19	-0.2
3,348,330	+				+2.9
3,348,331	-		DZA65_RS15440	0.19	-0.7
3,348,498	-		DZA65_RS15440	0.37	-0.7
3,348,538	+		DZA65_RS15440	0.41	-1.0
3,348,539	-		DZA65_RS15440	0.42	+0.7
3,348,539	-		DZA65_RS15440	0.42	+1.0
3,348,571	+		DZA65_RS15440	0.45	+1.2
3,348,572	-		DZA65_RS15440	0.45	-1.0
3,348,736	+		DZA65_RS15440	0.63	-0.2
3,348,736	+		DZA65_RS15440	0.63	+0.6
3,348,736	+		DZA65_RS15440	0.63	+0.0
3,348,736	+		DZA65_RS15440	0.63	-1.6
3,348,736	+		DZA65_RS15440	0.63	-0.2
3,348,737	-		DZA65_RS15440	0.63	+1.6
3,348,738	+		DZA65_RS15440	0.63	-1.0
3,348,739	-		DZA65_RS15440	0.63	+1.5
3,348,762	+		DZA65_RS15440	0.66	-1.3
3,348,780	+		DZA65_RS15440	0.68	-1.4
3,348,781	-		DZA65_RS15440	0.68	-0.4
3,348,781	-		DZA65_RS15440	0.68	-0.1
3,348,781	-		DZA65_RS15440	0.68	+1.2
3,348,815	+		DZA65_RS15440	0.72	+0.3
3,348,815	+		DZA65_RS15440	0.72	+0.4
3,348,815	+		DZA65_RS15440	0.72	-0.2
3,348,816	-		DZA65_RS15440	0.72	-1.0
3,348,816	-		DZA65_RS15440	0.72	+0.3
3,348,816	-		DZA65_RS15440	0.72	-0.3
3,348,816	-		DZA65_RS15440	0.72	+0.8
3,348,827	+		DZA65_RS15440	0.73	-0.6
3,348,827	+		DZA65_RS15440	0.73	+1.3
3,348,827	+		DZA65_RS15440	0.73	-1.0
3,348,828	-		DZA65_RS15440	0.73	+0.0
3,348,828	-		DZA65_RS15440	0.73	-1.4
3,348,845	+		DZA65_RS15440	0.75	-0.7
3,348,845	+		DZA65_RS15440	0.75	+0.1
3,348,845	+		DZA65_RS15440	0.75	+0.2
3,348,846	-		DZA65_RS15440	0.75	+1.1
3,348,846	-		DZA65_RS15440	0.75	+2.3
3,348,846	-		DZA65_RS15440	0.75	+0.8
3,348,883	+		DZA65_RS15440	0.79	+1.3
3,348,883	+		DZA65_RS15440	0.79	-1.4
3,348,884	-		DZA65_RS15440	0.79	+0.2
3,348,898	+		DZA65_RS15440	0.81	+0.5
3,348,898	+		DZA65_RS15440	0.81	-1.4
3,348,898	+		DZA65_RS15440	0.81	-2.4
3,348,898	+				-1.0
3,348,899	-		DZA65_RS15440	0.81	+1.0
3,348,899	-		DZA65_RS15440	0.81	+1.0
3,348,899	-		DZA65_RS15440	0.81	+0.7
3,348,899	-		DZA65_RS15440	0.81	-2.1
3,348,899	-		DZA65_RS15440	0.81	-1.3
3,348,901	-		DZA65_RS15440	0.81	-0.8
3,348,958	+		DZA65_RS15440	0.88	+0.2
3,348,958	+		DZA65_RS15440	0.88	+0.2
3,348,958	+		DZA65_RS15440	0.88	+0.2
3,348,958	+		DZA65_RS15440	0.88	+0.6
3,348,959	-		DZA65_RS15440	0.88	+0.0
3,348,961	+		DZA65_RS15440	0.88	-2.0
3,348,961	+		DZA65_RS15440	0.88	+1.8
3,348,961	+		DZA65_RS15440	0.88	+0.2
3,348,961	+		DZA65_RS15440	0.88	+0.9
3,348,961	+		DZA65_RS15440	0.88	-0.2
3,348,961	+		DZA65_RS15440	0.88	-0.6
3,348,962	-		DZA65_RS15440	0.88	+1.0
3,348,962	-		DZA65_RS15440	0.88	-1.4
3,348,962	-		DZA65_RS15440	0.88	+1.3
3,348,962	-		DZA65_RS15440	0.88	-1.0
3,348,962	-		DZA65_RS15440	0.88	-0.4
3,348,962	-		DZA65_RS15440	0.88	+0.9
3,348,962	-		DZA65_RS15440	0.88	-3.2
3,348,962	-		DZA65_RS15440	0.88	+0.3
3,348,962	-		DZA65_RS15440	0.88	+0.7
3,348,965	+		DZA65_RS15440	0.88	+1.2
3,348,965	+		DZA65_RS15440	0.88	+0.4
3,348,966	-		DZA65_RS15440	0.88	+0.5
3,349,069	+				+0.2
3,349,069	+				+0.5
3,349,069	+				-0.6
3,349,069	+				+0.8
3,349,069	+				-1.9
3,349,069	+				+0.6
3,349,069	+				-0.9
3,349,069	+				+0.0
3,349,070	-				-1.0
3,349,070	-				-0.2
3,349,074	+				-0.8
3,349,074	+				+1.2
3,349,074	+				-1.0
3,349,074	+				-0.3
3,349,074	+				+0.0
3,349,074	+				+0.1
3,349,074	+				+0.6
3,349,074	+				-0.4
3,349,074	+				+0.4
3,349,074	+				-1.0
3,349,075	-				+1.1
3,349,075	-				-0.2
3,349,075	-				-0.3
3,349,075	-				+0.8
3,349,075	-				+1.3
3,349,075	-				+0.0
3,349,075	-				-1.7
3,349,075	-				+0.6
3,349,075	-				+3.1
3,349,075	-				-0.3
3,349,075	-				+0.2
3,349,078	+				+1.2
3,349,078	+				-0.3
3,349,078	+				+0.6
3,349,079	-				+0.8
3,349,142	+				+0.8
3,349,143	-				+0.8
3,349,241	-		DZA65_RS15445	0.43	-2.2
3,349,353	+		DZA65_RS15445	0.84	+0.9
3,349,353	+		DZA65_RS15445	0.84	-1.5
3,349,353	+		DZA65_RS15445	0.84	+0.0
3,349,353	+		DZA65_RS15445	0.84	+0.8
3,349,353	+		DZA65_RS15445	0.84	-1.7
3,349,353	+				-1.0
3,349,353	+		DZA65_RS15445	0.84	+0.0
3,349,353	+		DZA65_RS15445	0.84	-0.1
3,349,354	-		DZA65_RS15445	0.84	+0.9
3,349,354	-		DZA65_RS15445	0.84	+1.3
3,349,354	-		DZA65_RS15445	0.84	+2.0
3,349,451	-				+0.8
3,349,487	-				+1.8
3,349,509	-		DZA65_RS15450	0.13	+1.0
3,349,546	+		DZA65_RS15450	0.20	+1.9
3,349,546	+		DZA65_RS15450	0.20	-0.4
3,349,546	+		DZA65_RS15450	0.20	-0.7
3,349,546	+		DZA65_RS15450	0.20	+0.8
3,349,546	+		DZA65_RS15450	0.20	-1.0
3,349,546	+		DZA65_RS15450	0.20	-1.4
3,349,546	+		DZA65_RS15450	0.20	-1.5
3,349,546	+		DZA65_RS15450	0.20	-0.7
3,349,547	-		DZA65_RS15450	0.20	-0.2
3,349,547	-		DZA65_RS15450	0.20	-2.2
3,349,547	-		DZA65_RS15450	0.20	-1.2
3,349,632	-		DZA65_RS15450	0.35	-1.4
3,349,632	-		DZA65_RS15450	0.35	+0.6
3,349,632	-		DZA65_RS15450	0.35	+1.1
3,349,738	+		DZA65_RS15450	0.54	-3.3
3,349,738	+		DZA65_RS15450	0.54	+1.8
3,349,819	+		DZA65_RS15450	0.68	-0.4
3,349,820	-		DZA65_RS15450	0.68	-0.7
3,349,820	-		DZA65_RS15450	0.68	+0.3
3,349,850	-		DZA65_RS15450	0.74	-0.7
3,349,876	+		DZA65_RS15450	0.78	+1.0
3,349,877	-		DZA65_RS15450	0.79	+0.2
3,349,877	-		DZA65_RS15450	0.79	-0.4
3,349,877	-		DZA65_RS15450	0.79	+1.3
3,349,877	-		DZA65_RS15450	0.79	+1.1
3,349,880	+		DZA65_RS15450	0.79	+1.2
3,349,881	-		DZA65_RS15450	0.79	+1.2
3,349,881	-		DZA65_RS15450	0.79	-2.0
3,349,881	-		DZA65_RS15450	0.79	-0.3
3,349,881	-		DZA65_RS15450	0.79	-1.3
3,349,916	-		DZA65_RS15450	0.85	-1.2
3,349,916	-		DZA65_RS15450	0.85	+0.2
3,349,960	+				-0.4
3,349,998	+				+1.4
3,349,999	-				-0.4
3,349,999	-				-0.6
3,349,999	-				+0.7
3,350,003	+				-0.2
3,350,003	+				+0.8
3,350,003	+				-0.1
3,350,003	+				-1.4
3,350,003	+				+0.6
3,350,003	+				+0.2
3,350,003	+				-1.0
3,350,003	+				-0.1
3,350,003	+				-1.2
3,350,004	-				-0.7
3,350,004	-				-0.5
3,350,004	-				-0.6
3,350,004	-				-0.8
3,350,004	-				-0.1
3,350,004	-				+0.2
3,350,004	-				+1.2
3,350,004	-				-1.0