Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14590

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,174,691	+		DZA65_RS14580	0.81	+0.1
3,174,691	+		DZA65_RS14580	0.81	-1.0
3,174,692	-		DZA65_RS14580	0.81	-1.3
3,174,692	-		DZA65_RS14580	0.81	-1.7
3,174,726	+		DZA65_RS14580	0.85	-1.5
3,174,727	-		DZA65_RS14580	0.85	-1.8
3,174,727	-		DZA65_RS14580	0.85	-0.5
3,174,727	-		DZA65_RS14580	0.85	+0.8
3,174,731	-		DZA65_RS14580	0.85	-2.1
3,174,731	-		DZA65_RS14580	0.85	-0.1
3,174,847	+				+0.8
3,174,847	+				-0.8
3,174,847	+				-1.5
3,174,847	+				-0.3
3,174,848	-				+0.1
3,174,848	-				+0.1
3,174,848	-				-0.4
3,174,848	-				-1.1
3,174,848	-				+0.9
3,174,849	+				+0.3
3,174,849	+				-0.4
3,174,849	+				-1.1
3,174,849	+				+0.5
3,174,850	-				-0.5
3,174,850	-				+0.5
3,174,859	-				-0.3
3,174,876	+				+0.7
3,174,876	+				+0.3
3,174,877	-				-0.5
3,174,877	-				-2.3
3,174,883	+				+0.5
3,174,883	+				-0.7
3,174,883	+				+0.2
3,174,883	+				+0.1
3,174,887	+				+0.3
3,174,887	+				+0.4
3,174,887	+				-0.3
3,174,888	-				+2.1
3,174,888	-				+1.0
3,174,888	-				-0.3
3,174,888	-				-0.7
3,174,926	-				+1.2
3,174,926	-				+0.5
3,174,934	+				-1.1
3,174,934	+				-0.5
3,174,935	-				+0.5
3,175,042	+		DZA65_RS14585	0.20	+0.8
3,175,042	+		DZA65_RS14585	0.20	-0.5
3,175,043	-		DZA65_RS14585	0.20	+0.5
3,175,062	+		DZA65_RS14585	0.23	+0.9
3,175,063	-		DZA65_RS14585	0.23	+0.3
3,175,069	-		DZA65_RS14585	0.24	-0.2
3,175,069	-		DZA65_RS14585	0.24	+0.7
3,175,141	+		DZA65_RS14585	0.36	-1.0
3,175,141	+		DZA65_RS14585	0.36	+0.4
3,175,141	+		DZA65_RS14585	0.36	+0.6
3,175,142	-		DZA65_RS14585	0.36	+0.8
3,175,142	-		DZA65_RS14585	0.36	+0.1
3,175,142	-		DZA65_RS14585	0.36	+0.9
3,175,191	-		DZA65_RS14585	0.44	-0.7
3,175,204	+		DZA65_RS14585	0.46	-0.7
3,175,204	+		DZA65_RS14585	0.46	-0.1
3,175,204	+		DZA65_RS14585	0.46	+0.2
3,175,204	+		DZA65_RS14585	0.46	+0.8
3,175,204	+		DZA65_RS14585	0.46	-0.8
3,175,205	-		DZA65_RS14585	0.46	-0.8
3,175,205	-		DZA65_RS14585	0.46	+0.9
3,175,205	-		DZA65_RS14585	0.46	+0.1
3,175,238	+		DZA65_RS14585	0.51	-1.8
3,175,350	+		DZA65_RS14585	0.68	-0.6
3,175,350	+		DZA65_RS14585	0.68	+0.5
3,175,350	+		DZA65_RS14585	0.68	-0.1
3,175,350	+		DZA65_RS14585	0.68	-0.9
3,175,350	+		DZA65_RS14585	0.68	+1.2
3,175,351	-		DZA65_RS14585	0.69	+1.0
3,175,351	-		DZA65_RS14585	0.69	+0.5
3,175,351	-		DZA65_RS14585	0.69	-2.7
3,175,382	+		DZA65_RS14585	0.73	+0.5
3,175,382	+		DZA65_RS14585	0.73	-1.1
3,175,404	+		DZA65_RS14585	0.77	+0.8
3,175,404	+		DZA65_RS14585	0.77	+0.3
3,175,405	-		DZA65_RS14585	0.77	+1.0
3,175,405	-		DZA65_RS14585	0.77	-0.3
3,175,405	-		DZA65_RS14585	0.77	+0.5
3,175,405	-		DZA65_RS14585	0.77	-0.3
3,175,483	-		DZA65_RS14585	0.89	-1.8
3,175,528	+				-0.5
3,175,528	+				+0.3
3,175,529	-				+0.7
3,175,532	+				-0.1
3,175,533	-				-0.2
3,175,533	-				+1.1
3,175,533	-				-1.1
3,175,533	-				-1.5
3,175,536	+				+1.3
3,175,536	+				-0.7
3,175,536	+				-0.2
3,175,537	-				-2.9
3,175,537	-				+0.2
3,175,537	-				-1.2
3,175,537	-				+0.4
3,175,537	-				-0.5
3,175,537	-				-0.3
3,175,537	-				+0.5
3,175,569	-				-0.5
3,175,572	+				+1.5
3,175,573	-				+0.1
3,175,573	-				-0.8
3,175,573	-				-0.8
3,175,575	+				-1.3
3,175,575	+				-2.5
3,175,585	+				+0.1
3,175,586	-				+0.5
3,175,606	+				-0.8
3,175,607	-				-1.8
3,175,607	-				+1.9
3,175,608	+				-2.3
3,175,608	+				-2.7
3,175,608	+				-2.1
3,175,608	+				-0.2
3,175,608	+				-0.0
3,175,609	-				+0.8
3,175,609	-				+0.1
3,175,609	-				+0.9
3,175,609	-				+0.3
3,175,610	+				-1.1
3,175,610	+				-0.9
3,175,610	+				+1.8
3,175,610	+				+0.3
3,175,611	-				-1.1
3,175,611	-				+0.5
3,175,612	+				-0.6
3,175,612	+				+0.5
3,175,692	+				-0.4
3,175,692	+				-0.8
3,175,693	-				-1.1
3,175,693	-				-0.8
3,175,693	-				-0.3
3,175,696	+				-0.5
3,175,697	-				+1.3
3,175,697	-				+0.1
3,175,728	+				-0.2
3,175,748	+				+0.5
3,175,752	+				+1.3
3,175,752	+				+1.5
3,175,752	+				-1.1
3,175,752	+				+1.0
3,175,752	+				-0.5
3,175,752	+				+0.7
3,175,753	-		DZA65_RS14590	0.10	-1.0
3,175,753	-		DZA65_RS14590	0.10	+0.1
3,175,753	-		DZA65_RS14590	0.10	+0.4
3,175,753	-		DZA65_RS14590	0.10	+1.6
3,175,753	-		DZA65_RS14590	0.10	+1.0
3,175,753	-		DZA65_RS14590	0.10	+0.2
3,175,754	+		DZA65_RS14590	0.10	-2.3
3,175,754	+		DZA65_RS14590	0.10	+1.5
3,175,754	+		DZA65_RS14590	0.10	-0.8
3,175,755	-		DZA65_RS14590	0.10	-0.7
3,175,755	-		DZA65_RS14590	0.10	+0.9
3,175,755	-		DZA65_RS14590	0.10	+1.2
3,175,755	-		DZA65_RS14590	0.10	-0.3
3,175,755	-		DZA65_RS14590	0.10	-0.0
3,175,758	+		DZA65_RS14590	0.11	-1.1
3,175,758	+		DZA65_RS14590	0.11	+0.3
3,175,758	+		DZA65_RS14590	0.11	-0.8
3,175,758	+		DZA65_RS14590	0.11	+0.1
3,175,758	+		DZA65_RS14590	0.11	+1.3
3,175,758	+		DZA65_RS14590	0.11	-0.7
3,175,758	+		DZA65_RS14590	0.11	+0.7
3,175,759	-		DZA65_RS14590	0.11	+1.7
3,175,759	-		DZA65_RS14590	0.11	-1.4
3,175,759	-		DZA65_RS14590	0.11	-0.5
3,175,759	-		DZA65_RS14590	0.11	-0.9
3,175,824	+		DZA65_RS14590	0.18	+1.5
3,175,824	+		DZA65_RS14590	0.18	-2.1
3,175,825	-		DZA65_RS14590	0.18	-0.1
3,175,827	+		DZA65_RS14590	0.18	+0.9
3,175,827	+		DZA65_RS14590	0.18	-0.5
3,175,828	-		DZA65_RS14590	0.18	+0.3
3,175,828	-		DZA65_RS14590	0.18	+0.3
3,175,828	-		DZA65_RS14590	0.18	-3.3
3,175,828	-		DZA65_RS14590	0.18	+0.5
3,175,833	+		DZA65_RS14590	0.19	-1.5
3,175,833	+		DZA65_RS14590	0.19	-2.7
3,175,834	-		DZA65_RS14590	0.19	+1.2
3,175,834	-		DZA65_RS14590	0.19	-1.2
3,175,834	-		DZA65_RS14590	0.19	+0.7
3,175,867	+		DZA65_RS14590	0.23	+1.7
3,175,867	+		DZA65_RS14590	0.23	+0.2
3,175,867	+		DZA65_RS14590	0.23	+1.2
3,175,867	+				-1.5
3,175,867	+		DZA65_RS14590	0.23	-0.5
3,175,867	+				+0.5
3,175,868	-		DZA65_RS14590	0.23	+0.2
3,175,868	-		DZA65_RS14590	0.23	+0.2
3,175,868	-		DZA65_RS14590	0.23	-1.7
3,175,868	-		DZA65_RS14590	0.23	-0.7
3,175,889	+		DZA65_RS14590	0.25	-1.8
3,175,889	+		DZA65_RS14590	0.25	+0.2
3,176,085	+		DZA65_RS14590	0.47	-0.1
3,176,087	+		DZA65_RS14590	0.47	+2.3
3,176,087	+		DZA65_RS14590	0.47	-2.3
3,176,088	-		DZA65_RS14590	0.47	-0.2
3,176,088	-		DZA65_RS14590	0.47	-0.3
3,176,093	+				-0.5
3,176,124	-		DZA65_RS14590	0.51	+0.6
3,176,168	+		DZA65_RS14590	0.56	-1.7
3,176,168	+		DZA65_RS14590	0.56	+0.3
3,176,168	+		DZA65_RS14590	0.56	-2.7
3,176,181	+				+2.3
3,176,196	-		DZA65_RS14590	0.59	+0.2
3,176,247	+		DZA65_RS14590	0.65	-0.2
3,176,307	+		DZA65_RS14590	0.72	-0.3
3,176,307	+		DZA65_RS14590	0.72	+0.8
3,176,308	-		DZA65_RS14590	0.72	+1.3
3,176,308	-		DZA65_RS14590	0.72	+0.2
3,176,327	+		DZA65_RS14590	0.74	-0.5
3,176,327	+		DZA65_RS14590	0.74	+0.9
3,176,334	+		DZA65_RS14590	0.75	+0.5
3,176,334	+		DZA65_RS14590	0.75	+1.5
3,176,337	+		DZA65_RS14590	0.75	+0.3
3,176,399	-		DZA65_RS14590	0.82	+0.9
3,176,399	-		DZA65_RS14590	0.82	+0.5
3,176,407	-		DZA65_RS14590	0.83	-2.3
3,176,433	-		DZA65_RS14590	0.86	+0.3
3,176,433	-		DZA65_RS14590	0.86	-1.0
3,176,511	-				+1.1
3,176,573	+				+1.1
3,176,574	-				+0.0
3,176,574	-				-0.2
3,176,640	-				+1.0
3,176,676	+				+0.6
3,176,702	-				-0.1
3,176,725	+				-0.6
3,176,726	-				+0.1
3,176,787	+				-0.7
3,176,806	-				+2.2
3,176,820	+				+1.1
3,176,860	-				-1.8
3,176,943	-		DZA65_RS14595	0.16	+1.2
3,176,953	+		DZA65_RS14595	0.18	+0.6
3,176,954	-		DZA65_RS14595	0.18	+0.7
3,176,959	-		DZA65_RS14595	0.19	-0.9
3,177,004	-		DZA65_RS14595	0.27	-1.1
3,177,037	+		DZA65_RS14595	0.34	+2.1
3,177,037	+		DZA65_RS14595	0.34	+0.5
3,177,037	+		DZA65_RS14595	0.34	-0.3
3,177,037	+		DZA65_RS14595	0.34	-0.7
3,177,037	+		DZA65_RS14595	0.34	+0.5
3,177,037	+		DZA65_RS14595	0.34	-0.7
3,177,037	+		DZA65_RS14595	0.34	-1.2
3,177,037	+		DZA65_RS14595	0.34	+0.5
3,177,037	+		DZA65_RS14595	0.34	+0.0
3,177,037	+				+0.5
3,177,037	+		DZA65_RS14595	0.34	+0.9
3,177,037	+		DZA65_RS14595	0.34	-0.1
3,177,037	+		DZA65_RS14595	0.34	-1.2
3,177,038	-		DZA65_RS14595	0.34	+0.2
3,177,038	-		DZA65_RS14595	0.34	+0.8
3,177,038	-		DZA65_RS14595	0.34	+1.7
3,177,038	-		DZA65_RS14595	0.34	+0.2
3,177,038	-		DZA65_RS14595	0.34	-0.4
3,177,038	-		DZA65_RS14595	0.34	-1.8
3,177,038	-		DZA65_RS14595	0.34	+1.1
3,177,038	-		DZA65_RS14595	0.34	+1.0
3,177,038	-		DZA65_RS14595	0.34	-0.3
3,177,038	-		DZA65_RS14595	0.34	-1.2
3,177,038	-		DZA65_RS14595	0.34	-0.7
3,177,101	+		DZA65_RS14595	0.46	+0.1
3,177,101	+		DZA65_RS14595	0.46	-0.1
3,177,101	+		DZA65_RS14595	0.46	-1.4
3,177,101	+		DZA65_RS14595	0.46	+1.7
3,177,101	+		DZA65_RS14595	0.46	-0.8
3,177,101	+		DZA65_RS14595	0.46	+0.6
3,177,101	+		DZA65_RS14595	0.46	-1.3
3,177,102	-		DZA65_RS14595	0.46	+1.0
3,177,102	-		DZA65_RS14595	0.46	+0.7
3,177,102	-		DZA65_RS14595	0.46	+1.2
3,177,102	-		DZA65_RS14595	0.46	-0.3
3,177,113	+		DZA65_RS14595	0.48	-1.5
3,177,113	+		DZA65_RS14595	0.48	+0.6
3,177,113	+		DZA65_RS14595	0.48	-1.3
3,177,113	+		DZA65_RS14595	0.48	-0.5
3,177,113	+		DZA65_RS14595	0.48	+0.5
3,177,114	-		DZA65_RS14595	0.48	-0.3
3,177,114	-		DZA65_RS14595	0.48	-0.1
3,177,130	+		DZA65_RS14595	0.51	+0.5
3,177,131	-		DZA65_RS14595	0.51	-0.8
3,177,131	-		DZA65_RS14595	0.51	-0.7
3,177,131	-		DZA65_RS14595	0.51	+0.3
3,177,133	+		DZA65_RS14595	0.52	-0.5
3,177,133	+		DZA65_RS14595	0.52	-0.8
3,177,133	+		DZA65_RS14595	0.52	+0.5
3,177,175	+		DZA65_RS14595	0.60	-0.8
3,177,176	-		DZA65_RS14595	0.60	+0.7
3,177,234	-		DZA65_RS14595	0.71	+0.5
3,177,259	+		DZA65_RS14595	0.76	+0.5
3,177,260	-		DZA65_RS14595	0.76	+1.2
3,177,261	+		DZA65_RS14595	0.76	+0.5
3,177,261	+		DZA65_RS14595	0.76	-0.1
3,177,261	+		DZA65_RS14595	0.76	-0.1
3,177,261	+		DZA65_RS14595	0.76	-1.1
3,177,261	+		DZA65_RS14595	0.76	-1.8
3,177,261	+		DZA65_RS14595	0.76	+2.1
3,177,261	+		DZA65_RS14595	0.76	-0.2
3,177,261	+		DZA65_RS14595	0.76	-0.5
3,177,261	+		DZA65_RS14595	0.76	+0.7
3,177,261	+		DZA65_RS14595	0.76	+1.7
3,177,262	-		DZA65_RS14595	0.76	-1.3
3,177,262	-		DZA65_RS14595	0.76	-1.8
3,177,262	-		DZA65_RS14595	0.76	+0.1
3,177,262	-				-0.8
3,177,262	-		DZA65_RS14595	0.76	-2.0
3,177,262	-		DZA65_RS14595	0.76	-0.7
3,177,262	-		DZA65_RS14595	0.76	-0.2
3,177,262	-		DZA65_RS14595	0.76	+1.3
3,177,265	+		DZA65_RS14595	0.77	+0.7
3,177,265	+		DZA65_RS14595	0.77	+0.1
3,177,265	+		DZA65_RS14595	0.77	-0.3
3,177,265	+		DZA65_RS14595	0.77	-1.8
3,177,265	+		DZA65_RS14595	0.77	-0.4
3,177,265	+		DZA65_RS14595	0.77	+0.9
3,177,265	+		DZA65_RS14595	0.77	-0.4
3,177,265	+		DZA65_RS14595	0.77	-0.1
3,177,266	-		DZA65_RS14595	0.77	-1.3
3,177,266	-		DZA65_RS14595	0.77	-1.2
3,177,266	-		DZA65_RS14595	0.77	+0.6
3,177,266	-		DZA65_RS14595	0.77	-2.3
3,177,266	-		DZA65_RS14595	0.77	-1.8
3,177,266	-		DZA65_RS14595	0.77	-0.3
3,177,266	-		DZA65_RS14595	0.77	-1.8
3,177,266	-		DZA65_RS14595	0.77	+0.3
3,177,310	-		DZA65_RS14595	0.85	-2.3
3,177,334	+		DZA65_RS14595	0.90	-0.8
3,177,334	+		DZA65_RS14595	0.90	-0.3
3,177,335	-				-0.1
3,177,335	-				-0.2
3,177,335	-				+0.7
3,177,335	-				-1.7
3,177,335	-				-0.1
3,177,365	-				+1.2
3,177,376	-				-1.8
3,177,376	-				+0.4
3,177,389	-				+1.0
3,177,389	-				-0.1
3,177,392	-				+0.1
3,177,394	-				+0.9
3,177,432	+				+0.0
3,177,478	-				-1.3
3,177,491	+				+0.0
3,177,501	+				+1.5
3,177,525	+				+0.7