Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14525

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,162,911	-		DZA65_RS14520	0.39	+0.5
3,162,911	-		DZA65_RS14520	0.39	+0.5
3,162,929	+		DZA65_RS14520	0.40	-1.8
3,162,930	-		DZA65_RS14520	0.40	+0.2
3,162,930	-		DZA65_RS14520	0.40	-0.8
3,162,976	+		DZA65_RS14520	0.43	+0.7
3,162,977	-		DZA65_RS14520	0.43	-1.8
3,163,034	+		DZA65_RS14520	0.47	-0.5
3,163,035	-		DZA65_RS14520	0.47	+0.5
3,163,084	+		DZA65_RS14520	0.50	-0.5
3,163,084	+		DZA65_RS14520	0.50	+0.7
3,163,085	-		DZA65_RS14520	0.50	-1.5
3,163,085	-		DZA65_RS14520	0.50	+1.9
3,163,088	+		DZA65_RS14520	0.50	-3.3
3,163,088	+		DZA65_RS14520	0.50	-0.3
3,163,088	+		DZA65_RS14520	0.50	-1.0
3,163,088	+		DZA65_RS14520	0.50	-0.2
3,163,089	-		DZA65_RS14520	0.51	+0.7
3,163,089	-		DZA65_RS14520	0.51	-1.1
3,163,089	-		DZA65_RS14520	0.51	+0.1
3,163,089	-		DZA65_RS14520	0.51	-0.3
3,163,089	-		DZA65_RS14520	0.51	+0.2
3,163,089	-		DZA65_RS14520	0.51	+0.1
3,163,089	-		DZA65_RS14520	0.51	-0.5
3,163,089	-		DZA65_RS14520	0.51	-1.8
3,163,089	-		DZA65_RS14520	0.51	-0.5
3,163,113	-		DZA65_RS14520	0.52	+0.5
3,163,176	+		DZA65_RS14520	0.56	-0.1
3,163,195	+		DZA65_RS14520	0.58	-1.1
3,163,196	-		DZA65_RS14520	0.58	+1.3
3,163,251	+		DZA65_RS14520	0.61	-1.3
3,163,271	+		DZA65_RS14520	0.63	+0.3
3,163,271	+		DZA65_RS14520	0.63	-0.5
3,163,272	-		DZA65_RS14520	0.63	-1.8
3,163,272	-		DZA65_RS14520	0.63	+0.0
3,163,277	+		DZA65_RS14520	0.63	+0.5
3,163,277	+		DZA65_RS14520	0.63	+0.0
3,163,277	+		DZA65_RS14520	0.63	-0.2
3,163,277	+		DZA65_RS14520	0.63	+0.5
3,163,278	-		DZA65_RS14520	0.63	-0.3
3,163,278	-		DZA65_RS14520	0.63	+0.9
3,163,278	-		DZA65_RS14520	0.63	-0.3
3,163,278	-		DZA65_RS14520	0.63	-0.7
3,163,278	-		DZA65_RS14520	0.63	+0.4
3,163,278	-		DZA65_RS14520	0.63	-0.8
3,163,279	+		DZA65_RS14520	0.63	-1.5
3,163,279	+		DZA65_RS14520	0.63	-2.1
3,163,279	+		DZA65_RS14520	0.63	-0.5
3,163,279	+		DZA65_RS14520	0.63	+0.1
3,163,279	+		DZA65_RS14520	0.63	-0.8
3,163,280	-		DZA65_RS14520	0.63	+0.7
3,163,280	-		DZA65_RS14520	0.63	+1.1
3,163,284	+		DZA65_RS14520	0.63	-0.5
3,163,284	+		DZA65_RS14520	0.63	-1.1
3,163,284	+		DZA65_RS14520	0.63	+0.6
3,163,285	-		DZA65_RS14520	0.63	-0.2
3,163,285	-		DZA65_RS14520	0.63	+1.1
3,163,285	-		DZA65_RS14520	0.63	+0.8
3,163,285	-		DZA65_RS14520	0.63	-0.5
3,163,295	+		DZA65_RS14520	0.64	+0.4
3,163,295	+		DZA65_RS14520	0.64	-0.2
3,163,317	-		DZA65_RS14520	0.66	-0.1
3,163,317	-		DZA65_RS14520	0.66	+0.5
3,163,325	+		DZA65_RS14520	0.66	-1.5
3,163,325	+		DZA65_RS14520	0.66	+0.3
3,163,325	+		DZA65_RS14520	0.66	+0.4
3,163,325	+		DZA65_RS14520	0.66	+1.0
3,163,325	+				+0.1
3,163,325	+		DZA65_RS14520	0.66	-0.5
3,163,325	+		DZA65_RS14520	0.66	-0.8
3,163,325	+		DZA65_RS14520	0.66	-0.5
3,163,325	+		DZA65_RS14520	0.66	-0.0
3,163,326	-		DZA65_RS14520	0.66	+0.7
3,163,326	-		DZA65_RS14520	0.66	+0.3
3,163,326	-		DZA65_RS14520	0.66	-0.5
3,163,326	-		DZA65_RS14520	0.66	-1.5
3,163,326	-		DZA65_RS14520	0.66	-0.5
3,163,369	+		DZA65_RS14520	0.69	-2.1
3,163,369	+		DZA65_RS14520	0.69	+0.1
3,163,370	-		DZA65_RS14520	0.69	-0.2
3,163,370	-		DZA65_RS14520	0.69	-0.5
3,163,370	-		DZA65_RS14520	0.69	-1.5
3,163,370	-		DZA65_RS14520	0.69	-1.0
3,163,410	+		DZA65_RS14520	0.72	+2.1
3,163,411	-		DZA65_RS14520	0.72	+0.1
3,163,411	-		DZA65_RS14520	0.72	-2.2
3,163,411	-		DZA65_RS14520	0.72	-0.7
3,163,411	-		DZA65_RS14520	0.72	+0.2
3,163,411	-		DZA65_RS14520	0.72	+0.2
3,163,411	-		DZA65_RS14520	0.72	+0.3
3,163,461	+		DZA65_RS14520	0.75	+0.4
3,163,461	+		DZA65_RS14520	0.75	+0.8
3,163,461	+		DZA65_RS14520	0.75	-0.2
3,163,462	-		DZA65_RS14520	0.75	+0.2
3,163,462	-		DZA65_RS14520	0.75	+0.5
3,163,462	-		DZA65_RS14520	0.75	+1.7
3,163,513	+		DZA65_RS14520	0.79	-0.3
3,163,513	+		DZA65_RS14520	0.79	-0.2
3,163,513	+		DZA65_RS14520	0.79	-0.3
3,163,514	-		DZA65_RS14520	0.79	-0.5
3,163,514	-		DZA65_RS14520	0.79	-0.1
3,163,520	+		DZA65_RS14520	0.79	-0.2
3,163,520	+		DZA65_RS14520	0.79	-0.3
3,163,550	+		DZA65_RS14520	0.81	-0.5
3,163,550	+		DZA65_RS14520	0.81	-1.1
3,163,550	+		DZA65_RS14520	0.81	+0.5
3,163,550	+		DZA65_RS14520	0.81	-3.5
3,163,551	-		DZA65_RS14520	0.81	-1.0
3,163,551	-		DZA65_RS14520	0.81	-0.5
3,163,551	-		DZA65_RS14520	0.81	-0.8
3,163,551	-		DZA65_RS14520	0.81	+1.2
3,163,551	-		DZA65_RS14520	0.81	-0.5
3,163,551	-		DZA65_RS14520	0.81	+0.3
3,163,551	-		DZA65_RS14520	0.81	+0.4
3,163,618	+		DZA65_RS14520	0.85	+0.5
3,163,628	+		DZA65_RS14520	0.86	-0.0
3,163,629	-		DZA65_RS14520	0.86	-1.5
3,163,630	+		DZA65_RS14520	0.86	-1.5
3,163,631	-		DZA65_RS14520	0.86	+1.1
3,163,656	+		DZA65_RS14520	0.88	+0.9
3,163,656	+		DZA65_RS14520	0.88	-1.8
3,163,657	-		DZA65_RS14520	0.88	+1.1
3,163,657	-		DZA65_RS14520	0.88	-1.2
3,163,657	-		DZA65_RS14520	0.88	+0.1
3,163,661	+		DZA65_RS14520	0.88	+1.4
3,163,661	+		DZA65_RS14520	0.88	+0.3
3,163,661	+		DZA65_RS14520	0.88	-0.4
3,163,661	+		DZA65_RS14520	0.88	+0.1
3,163,662	-		DZA65_RS14520	0.88	-1.5
3,163,662	-		DZA65_RS14520	0.88	+0.1
3,163,727	+				+0.5
3,163,727	+				-0.1
3,163,727	+				-0.6
3,163,727	+				+0.5
3,163,727	+				+1.5
3,163,727	+				+1.0
3,163,728	-				-0.5
3,163,728	-				-0.5
3,163,728	-				-0.2
3,163,729	+				-3.4
3,163,730	-				+0.5
3,163,730	-				+0.5
3,163,730	-				+0.5
3,163,841	-				-0.9
3,163,857	+				-0.1
3,163,857	+				+1.5
3,163,857	+				+0.6
3,163,857	+				+0.7
3,163,858	-				+0.9
3,163,858	-				+0.3
3,163,858	-				+1.5
3,163,858	-				-0.6
3,163,858	-				+0.1
3,163,870	-				+0.7
3,163,870	-				+0.0
3,163,894	-				-0.5
3,163,934	+				+0.5
3,163,935	-				-0.7
3,163,935	-				+0.1
3,163,936	+				-1.5
3,163,965	+				-0.5
3,163,965	+				-0.7
3,163,966	-				+0.5
3,163,966	-				+0.5
3,163,966	-				-0.1
3,163,966	-				+1.1
3,164,012	+		DZA65_RS14525	0.15	+0.6
3,164,012	+		DZA65_RS14525	0.15	-0.7
3,164,012	+		DZA65_RS14525	0.15	+0.2
3,164,012	+		DZA65_RS14525	0.15	-0.9
3,164,012	+		DZA65_RS14525	0.15	-0.2
3,164,013	-		DZA65_RS14525	0.15	-0.2
3,164,082	+		DZA65_RS14525	0.22	+0.5
3,164,082	+		DZA65_RS14525	0.22	-0.7
3,164,082	+		DZA65_RS14525	0.22	-1.7
3,164,085	+		DZA65_RS14525	0.22	-1.0
3,164,086	-		DZA65_RS14525	0.22	-1.5
3,164,086	-		DZA65_RS14525	0.22	+3.5
3,164,120	+		DZA65_RS14525	0.26	+1.8
3,164,120	+		DZA65_RS14525	0.26	+0.0
3,164,121	-		DZA65_RS14525	0.26	+1.8
3,164,121	-		DZA65_RS14525	0.26	-1.1
3,164,121	-		DZA65_RS14525	0.26	+0.4
3,164,121	-		DZA65_RS14525	0.26	+0.5
3,164,121	-		DZA65_RS14525	0.26	-1.2
3,164,122	+		DZA65_RS14525	0.26	+0.5
3,164,122	+		DZA65_RS14525	0.26	-0.4
3,164,122	+		DZA65_RS14525	0.26	-1.2
3,164,122	+		DZA65_RS14525	0.26	+0.8
3,164,122	+		DZA65_RS14525	0.26	+0.1
3,164,122	+		DZA65_RS14525	0.26	-0.7
3,164,122	+		DZA65_RS14525	0.26	+0.0
3,164,122	+		DZA65_RS14525	0.26	-0.0
3,164,123	-		DZA65_RS14525	0.26	-1.0
3,164,123	-		DZA65_RS14525	0.26	-1.1
3,164,123	-		DZA65_RS14525	0.26	+0.9
3,164,123	-		DZA65_RS14525	0.26	-0.1
3,164,123	-				-1.1
3,164,123	-		DZA65_RS14525	0.26	-0.5
3,164,123	-		DZA65_RS14525	0.26	-1.5
3,164,123	-		DZA65_RS14525	0.26	+1.4
3,164,123	-		DZA65_RS14525	0.26	-0.8
3,164,123	-		DZA65_RS14525	0.26	+0.1
3,164,150	+		DZA65_RS14525	0.29	-2.5
3,164,151	-		DZA65_RS14525	0.29	-0.1
3,164,182	+		DZA65_RS14525	0.33	+1.5
3,164,183	-		DZA65_RS14525	0.33	-2.1
3,164,183	-		DZA65_RS14525	0.33	-0.5
3,164,187	-		DZA65_RS14525	0.33	-1.1
3,164,187	-		DZA65_RS14525	0.33	+0.3
3,164,187	-		DZA65_RS14525	0.33	+0.2
3,164,207	+		DZA65_RS14525	0.35	-0.6
3,164,219	+		DZA65_RS14525	0.37	+1.2
3,164,219	+		DZA65_RS14525	0.37	-0.1
3,164,220	-		DZA65_RS14525	0.37	+0.3
3,164,220	-		DZA65_RS14525	0.37	-0.8
3,164,220	-		DZA65_RS14525	0.37	+1.5
3,164,220	-		DZA65_RS14525	0.37	+0.9
3,164,222	-		DZA65_RS14525	0.37	-0.3
3,164,249	+		DZA65_RS14525	0.40	+0.7
3,164,249	+		DZA65_RS14525	0.40	+0.1
3,164,252	+		DZA65_RS14525	0.40	+1.3
3,164,253	-		DZA65_RS14525	0.40	+0.3
3,164,253	-		DZA65_RS14525	0.40	-0.1
3,164,298	+		DZA65_RS14525	0.45	-2.3
3,164,299	-		DZA65_RS14525	0.45	+1.2
3,164,299	-		DZA65_RS14525	0.45	-0.3
3,164,299	-		DZA65_RS14525	0.45	-1.6
3,164,299	-		DZA65_RS14525	0.45	-0.8
3,164,300	+		DZA65_RS14525	0.45	+2.2
3,164,351	+		DZA65_RS14525	0.51	-1.8
3,164,385	+		DZA65_RS14525	0.54	-0.2
3,164,428	+		DZA65_RS14525	0.59	-0.7
3,164,429	-		DZA65_RS14525	0.59	-0.7
3,164,429	-				+0.5
3,164,432	+		DZA65_RS14525	0.59	-1.7
3,164,433	-		DZA65_RS14525	0.59	+0.8
3,164,434	+		DZA65_RS14525	0.59	-0.1
3,164,435	-		DZA65_RS14525	0.60	-1.2
3,164,435	-		DZA65_RS14525	0.60	-0.5
3,164,435	-		DZA65_RS14525	0.60	+0.1
3,164,505	+		DZA65_RS14525	0.67	-1.5
3,164,505	+		DZA65_RS14525	0.67	+0.3
3,164,505	+		DZA65_RS14525	0.67	-1.1
3,164,506	-		DZA65_RS14525	0.67	-1.3
3,164,506	-		DZA65_RS14525	0.67	-1.3
3,164,558	+		DZA65_RS14525	0.73	-2.0
3,164,739	+				+0.5
3,164,739	+				-0.5
3,164,739	+				+0.8
3,164,739	+				+0.5
3,164,740	-				-1.8
3,164,740	-				-0.8
3,164,740	-				+0.2
3,164,740	-				+0.5
3,164,794	+				-1.8
3,164,794	+				+0.7
3,164,794	+				+0.9
3,164,795	-				-0.1
3,164,803	+				-3.2
3,164,803	+				+0.8
3,164,803	+				-1.8
3,164,803	+				-0.2
3,164,804	-				-0.5
3,164,804	-				-1.4
3,164,815	+				+0.5
3,164,815	+				+0.5
3,164,815	+				-2.1
3,164,816	-				+1.6
3,164,847	+				-0.6
3,164,847	+				+1.8
3,164,847	+				-1.2
3,164,847	+				-2.5
3,164,848	-				-0.2
3,164,848	-				-0.5
3,164,848	-				-1.5
3,164,848	-				-1.1
3,164,857	-				-0.9
3,164,857	-				-1.8
3,164,924	+				+0.4
3,164,924	+				+0.2
3,164,924	+				-0.5
3,164,925	-				+0.2
3,164,936	+				+0.5
3,164,936	+				-0.3
3,164,936	+				-0.7
3,164,936	+				-0.4
3,164,936	+				+0.5
3,164,936	+				-1.5
3,164,936	+				+0.3
3,164,937	-				-1.1
3,164,937	-				-0.1
3,164,950	+				-2.2
3,164,950	+				+0.5
3,164,950	+				-1.8
3,164,950	+				-1.2
3,164,950	+				+4.5
3,164,950	+				-1.4
3,164,950	+				-0.5
3,164,950	+				+1.5
3,164,950	+				+0.8
3,164,950	+				-1.8
3,164,951	-				-0.4
3,164,951	-				-1.5
3,164,951	-				+1.2
3,164,951	-				+0.7
3,164,951	-				-1.1
3,164,951	-				+0.9
3,164,951	-				+1.0
3,164,951	-				-0.9
3,164,951	-				-0.9
3,164,951	-				-0.1
3,164,951	-				-0.7
3,164,951	-				+0.4
3,164,952	+				-1.3
3,164,952	+				-0.4
3,164,952	+				-1.0
3,164,952	+				-0.9
3,164,952	+				+0.1
3,164,953	-				+1.0
3,164,953	-				+0.2
3,164,953	-				+0.0
3,164,953	-				+0.3
3,164,954	+				-1.1
3,164,954	+				-0.5
3,164,954	+				+1.1
3,164,954	+				-0.6
3,164,954	+				+0.8
3,164,954	+				-1.1
3,164,954	+				-1.5
3,164,955	-				-0.5
3,164,955	-				-0.8
3,164,975	+				-0.5
3,164,975	+				-0.2
3,164,982	+				-0.0
3,164,982	+				+0.2
3,164,982	+				+0.5
3,164,982	+				-0.5
3,164,983	-				+0.5
3,164,983	-				-1.4
3,164,983	-				-1.0
3,164,983	-				+0.1
3,164,983	-				+1.9
3,164,983	-				+0.5
3,164,983	-				-2.3
3,164,988	+				-1.2
3,165,047	-		DZA65_RS14530	0.11	+0.2
3,165,117	+		DZA65_RS14530	0.18	+0.2
3,165,117	+		DZA65_RS14530	0.18	+0.2
3,165,118	-		DZA65_RS14530	0.18	-0.1
3,165,119	+		DZA65_RS14530	0.18	+0.5
3,165,119	+		DZA65_RS14530	0.18	+0.2
3,165,120	-		DZA65_RS14530	0.18	+0.5
3,165,120	-		DZA65_RS14530	0.18	+0.5
3,165,120	-		DZA65_RS14530	0.18	+0.5
3,165,120	-		DZA65_RS14530	0.18	+0.2
3,165,227	+		DZA65_RS14530	0.28	-0.3
3,165,227	+		DZA65_RS14530	0.28	+0.8
3,165,227	+		DZA65_RS14530	0.28	+0.2
3,165,227	+		DZA65_RS14530	0.28	-1.8
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3,165,228	-		DZA65_RS14530	0.28	+0.2
3,165,228	-		DZA65_RS14530	0.28	-1.1
3,165,228	-		DZA65_RS14530	0.28	-0.5
3,165,228	-		DZA65_RS14530	0.28	-0.2
3,165,255	+		DZA65_RS14530	0.30	-2.3
3,165,255	+		DZA65_RS14530	0.30	+0.9
3,165,259	+		DZA65_RS14530	0.31	-0.3
3,165,259	+		DZA65_RS14530	0.31	-1.8
3,165,259	+		DZA65_RS14530	0.31	+1.8
3,165,259	+		DZA65_RS14530	0.31	-0.7
3,165,260	-		DZA65_RS14530	0.31	+0.0
3,165,260	-		DZA65_RS14530	0.31	+0.3
3,165,260	-		DZA65_RS14530	0.31	+1.2
3,165,260	-		DZA65_RS14530	0.31	-0.4
3,165,260	-		DZA65_RS14530	0.31	+1.0
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3,165,260	-		DZA65_RS14530	0.31	+0.8
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3,165,333	+		DZA65_RS14530	0.37	-1.1
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3,165,388	-		DZA65_RS14530	0.42	-0.2
3,165,408	+		DZA65_RS14530	0.44	+0.7
3,165,470	+		DZA65_RS14530	0.50	+1.4
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3,165,575	-		DZA65_RS14530	0.59	-2.3
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3,165,614	+		DZA65_RS14530	0.63	-0.8
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3,165,740	-		DZA65_RS14530	0.74	-1.3
3,165,740	-		DZA65_RS14530	0.74	+0.1
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3,165,756	+		DZA65_RS14530	0.76	-1.1
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3,165,806	+		DZA65_RS14530	0.80	-1.1
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