Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14430

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,145,548	+		DZA65_RS14425	0.21	+0.4
3,145,548	+		DZA65_RS14425	0.21	-1.8
3,145,548	+		DZA65_RS14425	0.21	-0.6
3,145,548	+		DZA65_RS14425	0.21	+0.7
3,145,548	+		DZA65_RS14425	0.21	+0.5
3,145,549	-		DZA65_RS14425	0.21	+1.2
3,145,549	-		DZA65_RS14425	0.21	+0.1
3,145,549	-		DZA65_RS14425	0.21	+0.9
3,145,549	-		DZA65_RS14425	0.21	-0.7
3,145,549	-		DZA65_RS14425	0.21	-0.3
3,145,603	-		DZA65_RS14425	0.25	-2.3
3,145,614	+		DZA65_RS14425	0.26	-2.1
3,145,614	+		DZA65_RS14425	0.26	+1.2
3,145,671	+		DZA65_RS14425	0.31	-1.8
3,145,671	+		DZA65_RS14425	0.31	-1.8
3,145,671	+		DZA65_RS14425	0.31	-0.5
3,145,671	+		DZA65_RS14425	0.31	-1.7
3,145,672	-		DZA65_RS14425	0.31	+1.5
3,145,672	-		DZA65_RS14425	0.31	-2.8
3,145,672	-		DZA65_RS14425	0.31	-1.8
3,145,672	-		DZA65_RS14425	0.31	+0.2
3,145,672	-		DZA65_RS14425	0.31	-3.1
3,145,682	+		DZA65_RS14425	0.31	+0.3
3,145,682	+		DZA65_RS14425	0.31	-0.5
3,145,682	+		DZA65_RS14425	0.31	+0.5
3,145,715	+		DZA65_RS14425	0.34	+2.2
3,145,716	-		DZA65_RS14425	0.34	-0.5
3,145,720	-		DZA65_RS14425	0.35	+0.1
3,145,720	-		DZA65_RS14425	0.35	-0.2
3,145,749	+		DZA65_RS14425	0.37	+0.3
3,145,750	-		DZA65_RS14425	0.37	-1.8
3,145,750	-		DZA65_RS14425	0.37	-1.6
3,145,750	-				+0.2
3,145,750	-		DZA65_RS14425	0.37	+0.1
3,145,750	-		DZA65_RS14425	0.37	+1.1
3,145,750	-		DZA65_RS14425	0.37	+1.0
3,145,776	+		DZA65_RS14425	0.39	-0.5
3,145,779	+		DZA65_RS14425	0.39	-1.0
3,145,872	+		DZA65_RS14425	0.47	-0.5
3,145,937	+		DZA65_RS14425	0.52	+0.5
3,145,937	+		DZA65_RS14425	0.52	-1.8
3,145,937	+		DZA65_RS14425	0.52	+0.2
3,145,937	+		DZA65_RS14425	0.52	-0.7
3,145,937	+		DZA65_RS14425	0.52	+2.7
3,145,937	+		DZA65_RS14425	0.52	+0.5
3,145,937	+		DZA65_RS14425	0.52	+1.4
3,145,937	+		DZA65_RS14425	0.52	-0.9
3,145,937	+		DZA65_RS14425	0.52	-0.5
3,145,937	+		DZA65_RS14425	0.52	-1.7
3,145,937	+		DZA65_RS14425	0.52	-1.5
3,145,938	-		DZA65_RS14425	0.52	+0.1
3,145,938	-		DZA65_RS14425	0.52	+1.3
3,145,938	-		DZA65_RS14425	0.52	+0.9
3,145,938	-		DZA65_RS14425	0.52	+1.4
3,145,938	-		DZA65_RS14425	0.52	-0.1
3,145,939	+		DZA65_RS14425	0.52	+0.6
3,145,939	+		DZA65_RS14425	0.52	+0.5
3,145,939	+		DZA65_RS14425	0.52	-1.1
3,145,939	+		DZA65_RS14425	0.52	-1.0
3,145,940	-		DZA65_RS14425	0.52	-0.2
3,145,940	-		DZA65_RS14425	0.52	+0.8
3,145,940	-		DZA65_RS14425	0.52	+0.5
3,145,957	+		DZA65_RS14425	0.54	-0.2
3,146,035	+		DZA65_RS14425	0.60	-1.9
3,146,035	+		DZA65_RS14425	0.60	-1.2
3,146,050	+				+0.5
3,146,050	+		DZA65_RS14425	0.61	-0.5
3,146,050	+		DZA65_RS14425	0.61	-0.1
3,146,051	-		DZA65_RS14425	0.61	-2.7
3,146,051	-		DZA65_RS14425	0.61	+0.7
3,146,150	+		DZA65_RS14425	0.69	-0.4
3,146,150	+		DZA65_RS14425	0.69	+0.2
3,146,150	+		DZA65_RS14425	0.69	-1.8
3,146,150	+		DZA65_RS14425	0.69	+0.6
3,146,151	-		DZA65_RS14425	0.69	-0.6
3,146,151	-		DZA65_RS14425	0.69	-1.6
3,146,350	+		DZA65_RS14425	0.85	+0.2
3,146,351	-		DZA65_RS14425	0.85	-2.5
3,146,351	-		DZA65_RS14425	0.85	-0.2
3,146,351	-		DZA65_RS14425	0.85	-1.1
3,146,431	+				+1.1
3,146,431	+				+0.2
3,146,431	+				-1.0
3,146,432	-				+0.9
3,146,432	-				+1.1
3,146,432	-				+1.1
3,146,640	+		DZA65_RS14430	0.11	+1.3
3,146,740	+		DZA65_RS14430	0.21	-0.5
3,146,740	+		DZA65_RS14430	0.21	-0.2
3,146,740	+		DZA65_RS14430	0.21	+1.0
3,146,740	+		DZA65_RS14430	0.21	+0.7
3,146,741	-		DZA65_RS14430	0.21	-2.1
3,146,741	-		DZA65_RS14430	0.21	+0.3
3,146,741	-		DZA65_RS14430	0.21	+2.1
3,146,741	-		DZA65_RS14430	0.21	-1.8
3,146,741	-		DZA65_RS14430	0.21	-0.1
3,146,741	-		DZA65_RS14430	0.21	+0.6
3,146,741	-		DZA65_RS14430	0.21	+0.5
3,146,761	+		DZA65_RS14430	0.23	-2.1
3,146,761	+		DZA65_RS14430	0.23	-0.7
3,146,766	+		DZA65_RS14430	0.24	-2.5
3,146,766	+		DZA65_RS14430	0.24	+0.2
3,146,766	+		DZA65_RS14430	0.24	+1.2
3,146,766	+		DZA65_RS14430	0.24	+0.8
3,146,767	-		DZA65_RS14430	0.24	+1.5
3,146,767	-		DZA65_RS14430	0.24	-0.4
3,146,767	-		DZA65_RS14430	0.24	+0.9
3,146,767	-		DZA65_RS14430	0.24	+0.3
3,146,818	+		DZA65_RS14430	0.29	-1.5
3,146,819	-		DZA65_RS14430	0.29	-0.3
3,146,830	+		DZA65_RS14430	0.30	+0.5
3,146,831	-		DZA65_RS14430	0.30	-0.5
3,146,891	+		DZA65_RS14430	0.36	-0.7
3,146,926	+		DZA65_RS14430	0.39	+0.7
3,146,926	+		DZA65_RS14430	0.39	+1.1
3,146,951	+		DZA65_RS14430	0.42	+1.1
3,146,951	+		DZA65_RS14430	0.42	-0.4
3,146,951	+		DZA65_RS14430	0.42	-0.1
3,146,951	+		DZA65_RS14430	0.42	-1.1
3,146,951	+		DZA65_RS14430	0.42	+1.2
3,146,951	+		DZA65_RS14430	0.42	+0.2
3,146,951	+		DZA65_RS14430	0.42	+1.5
3,146,951	+		DZA65_RS14430	0.42	-0.2
3,146,952	-		DZA65_RS14430	0.42	+0.2
3,146,952	-		DZA65_RS14430	0.42	-0.1
3,146,952	-		DZA65_RS14430	0.42	+1.5
3,146,952	-		DZA65_RS14430	0.42	-1.7
3,146,953	+		DZA65_RS14430	0.42	+1.9
3,146,954	-		DZA65_RS14430	0.42	-0.5
3,146,954	-		DZA65_RS14430	0.42	+0.6
3,147,013	+		DZA65_RS14430	0.48	+0.5
3,147,014	-		DZA65_RS14430	0.48	+1.0
3,147,038	-		DZA65_RS14430	0.50	-0.5
3,147,047	+		DZA65_RS14430	0.51	+1.3
3,147,047	+		DZA65_RS14430	0.51	+1.5
3,147,047	+		DZA65_RS14430	0.51	+0.5
3,147,047	+		DZA65_RS14430	0.51	+1.2
3,147,047	+		DZA65_RS14430	0.51	+0.7
3,147,047	+		DZA65_RS14430	0.51	+1.9
3,147,047	+		DZA65_RS14430	0.51	+1.8
3,147,047	+		DZA65_RS14430	0.51	+0.8
3,147,047	+		DZA65_RS14430	0.51	+2.9
3,147,047	+		DZA65_RS14430	0.51	-1.6
3,147,047	+		DZA65_RS14430	0.51	+0.4
3,147,047	+		DZA65_RS14430	0.51	-0.5
3,147,047	+		DZA65_RS14430	0.51	+0.1
3,147,047	+		DZA65_RS14430	0.51	-0.9
3,147,048	-		DZA65_RS14430	0.51	-0.2
3,147,048	-		DZA65_RS14430	0.51	-0.1
3,147,048	-		DZA65_RS14430	0.51	+0.5
3,147,048	-		DZA65_RS14430	0.51	+0.3
3,147,048	-		DZA65_RS14430	0.51	-1.5
3,147,048	-		DZA65_RS14430	0.51	+0.2
3,147,048	-		DZA65_RS14430	0.51	+2.2
3,147,048	-		DZA65_RS14430	0.51	-1.7
3,147,048	-		DZA65_RS14430	0.51	+0.1
3,147,048	-		DZA65_RS14430	0.51	+0.2
3,147,048	-		DZA65_RS14430	0.51	+1.9
3,147,048	-		DZA65_RS14430	0.51	+0.9
3,147,049	+		DZA65_RS14430	0.51	-1.5
3,147,049	+		DZA65_RS14430	0.51	+1.2
3,147,049	+		DZA65_RS14430	0.51	-0.5
3,147,049	+		DZA65_RS14430	0.51	-0.1
3,147,050	-		DZA65_RS14430	0.51	-1.2
3,147,050	-		DZA65_RS14430	0.51	+0.8
3,147,050	-		DZA65_RS14430	0.51	+0.8
3,147,050	-		DZA65_RS14430	0.51	-0.8
3,147,050	-		DZA65_RS14430	0.51	+0.6
3,147,068	+		DZA65_RS14430	0.53	+0.9
3,147,068	+		DZA65_RS14430	0.53	+0.5
3,147,068	+		DZA65_RS14430	0.53	-0.2
3,147,069	-		DZA65_RS14430	0.53	-1.1
3,147,069	-		DZA65_RS14430	0.53	+0.2
3,147,069	-		DZA65_RS14430	0.53	-0.1
3,147,070	+		DZA65_RS14430	0.53	+0.3
3,147,070	+		DZA65_RS14430	0.53	-1.5
3,147,070	+		DZA65_RS14430	0.53	-1.3
3,147,070	+		DZA65_RS14430	0.53	-1.3
3,147,070	+		DZA65_RS14430	0.53	+1.2
3,147,070	+		DZA65_RS14430	0.53	+0.8
3,147,070	+		DZA65_RS14430	0.53	+0.5
3,147,071	-		DZA65_RS14430	0.53	+0.7
3,147,071	-		DZA65_RS14430	0.53	+0.7
3,147,071	-		DZA65_RS14430	0.53	-0.8
3,147,071	-		DZA65_RS14430	0.53	-1.7
3,147,071	-		DZA65_RS14430	0.53	-0.6
3,147,071	-		DZA65_RS14430	0.53	-0.4
3,147,071	-		DZA65_RS14430	0.53	-1.8
3,147,091	-		DZA65_RS14430	0.55	-1.8
3,147,106	+		DZA65_RS14430	0.57	+0.2
3,147,107	-		DZA65_RS14430	0.57	-0.9
3,147,140	+		DZA65_RS14430	0.60	-0.0
3,147,140	+		DZA65_RS14430	0.60	+0.5
3,147,140	+		DZA65_RS14430	0.60	-0.5
3,147,140	+		DZA65_RS14430	0.60	-1.5
3,147,140	+		DZA65_RS14430	0.60	-1.3
3,147,140	+		DZA65_RS14430	0.60	+0.2
3,147,140	+		DZA65_RS14430	0.60	+0.8
3,147,140	+		DZA65_RS14430	0.60	-0.1
3,147,141	-		DZA65_RS14430	0.60	+1.7
3,147,141	-		DZA65_RS14430	0.60	-2.5
3,147,141	-		DZA65_RS14430	0.60	-2.3
3,147,141	-		DZA65_RS14430	0.60	+0.5
3,147,141	-		DZA65_RS14430	0.60	-0.5
3,147,141	-		DZA65_RS14430	0.60	-0.0
3,147,141	-		DZA65_RS14430	0.60	-3.2
3,147,141	-		DZA65_RS14430	0.60	-0.5
3,147,310	+		DZA65_RS14430	0.77	+1.0
3,147,310	+		DZA65_RS14430	0.77	-1.1
3,147,310	+		DZA65_RS14430	0.77	-0.6
3,147,311	-		DZA65_RS14430	0.77	-0.5
3,147,346	+		DZA65_RS14430	0.80	+0.7
3,147,346	+		DZA65_RS14430	0.80	-2.8
3,147,347	-		DZA65_RS14430	0.80	-2.5
3,147,347	-		DZA65_RS14430	0.80	+0.5
3,147,347	-		DZA65_RS14430	0.80	+0.6
3,147,347	-		DZA65_RS14430	0.80	+0.1
3,147,371	+		DZA65_RS14430	0.83	-0.2
3,147,371	+		DZA65_RS14430	0.83	+0.8
3,147,371	+		DZA65_RS14430	0.83	+0.8
3,147,372	-		DZA65_RS14430	0.83	-0.5
3,147,395	-		DZA65_RS14430	0.85	+0.5
3,147,409	-		DZA65_RS14430	0.86	+2.3
3,147,492	-				+2.5
3,147,496	+				-0.2
3,147,497	-				-0.4
3,147,533	-				+0.3
3,147,553	+				-0.5
3,147,553	+				+1.1
3,147,553	+				+1.2
3,147,554	-				-2.7
3,147,554	-				-1.3
3,147,554	-				+0.5
3,147,554	-				-0.3
3,147,558	+				+1.0
3,147,558	+				-1.7
3,147,558	+				-0.5
3,147,559	-				-0.2
3,147,559	-				-1.5
3,147,559	-				+0.7
3,147,629	+		DZA65_RS14435	0.23	+0.8
3,147,630	-		DZA65_RS14435	0.24	+0.1
3,147,630	-		DZA65_RS14435	0.24	+0.5
3,147,630	-		DZA65_RS14435	0.24	-0.7
3,147,680	+		DZA65_RS14435	0.36	+0.7
3,147,680	+		DZA65_RS14435	0.36	+0.9
3,147,748	+		DZA65_RS14435	0.53	-0.4
3,147,748	+		DZA65_RS14435	0.53	-2.6
3,147,748	+				+0.5
3,147,748	+		DZA65_RS14435	0.53	-0.6
3,147,748	+		DZA65_RS14435	0.53	+0.8
3,147,749	-		DZA65_RS14435	0.53	-0.3
3,147,749	-		DZA65_RS14435	0.53	-1.1
3,147,749	-		DZA65_RS14435	0.53	+0.1
3,147,749	-		DZA65_RS14435	0.53	+2.2
3,147,749	-		DZA65_RS14435	0.53	+0.3
3,147,750	+		DZA65_RS14435	0.53	+0.6
3,147,750	+		DZA65_RS14435	0.53	-2.5
3,147,750	+		DZA65_RS14435	0.53	-0.2
3,147,750	+		DZA65_RS14435	0.53	+3.8
3,147,750	+		DZA65_RS14435	0.53	+1.3
3,147,750	+		DZA65_RS14435	0.53	+0.0
3,147,822	+		DZA65_RS14435	0.71	+1.1
3,147,822	+		DZA65_RS14435	0.71	+0.5
3,147,822	+		DZA65_RS14435	0.71	+1.5
3,147,822	+		DZA65_RS14435	0.71	-0.1
3,147,823	-		DZA65_RS14435	0.71	+0.9
3,147,876	+		DZA65_RS14435	0.84	-0.1
3,147,876	+		DZA65_RS14435	0.84	-0.8
3,147,876	+		DZA65_RS14435	0.84	-1.1
3,147,877	-		DZA65_RS14435	0.85	+1.0
3,147,877	-		DZA65_RS14435	0.85	+0.4
3,147,884	+		DZA65_RS14435	0.86	-0.8
3,147,885	-		DZA65_RS14435	0.87	+0.3
3,147,977	+				+0.4
3,147,977	+				+0.4
3,147,977	+				-1.9
3,147,986	+				+1.2
3,147,989	+				-0.2
3,147,989	+				+0.1
3,148,000	+				-0.8
3,148,000	+				-0.1
3,148,000	+				+0.7
3,148,000	+				+1.1
3,148,001	-				+0.4
3,148,001	-				+1.3
3,148,103	+		DZA65_RS14440	0.32	-1.1
3,148,103	+		DZA65_RS14440	0.32	+0.2
3,148,103	+		DZA65_RS14440	0.32	-1.1
3,148,103	+		DZA65_RS14440	0.32	-0.1
3,148,103	+		DZA65_RS14440	0.32	+0.3
3,148,103	+		DZA65_RS14440	0.32	+0.2
3,148,103	+		DZA65_RS14440	0.32	+1.0
3,148,103	+		DZA65_RS14440	0.32	+0.5
3,148,103	+				+0.1
3,148,104	-		DZA65_RS14440	0.33	-1.0
3,148,104	-		DZA65_RS14440	0.33	-1.3
3,148,104	-		DZA65_RS14440	0.33	-1.2
3,148,104	-		DZA65_RS14440	0.33	-1.3
3,148,104	-		DZA65_RS14440	0.33	-1.5
3,148,104	-		DZA65_RS14440	0.33	-1.8
3,148,278	+		DZA65_RS14440	0.90	+0.6
3,148,278	+		DZA65_RS14440	0.90	+0.1
3,148,278	+		DZA65_RS14440	0.90	-2.0
3,148,417	-		DZA65_RS14445	0.26	+0.5
3,148,482	+		DZA65_RS14445	0.50	+0.4
3,148,482	+		DZA65_RS14445	0.50	-1.1
3,148,500	+		DZA65_RS14445	0.56	-1.1
3,148,529	+		DZA65_RS14445	0.67	-0.5
3,148,529	+		DZA65_RS14445	0.67	-0.7
3,148,530	-		DZA65_RS14445	0.67	+1.3