Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14385

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,136,411	+		DZA65_RS14375	0.11	+1.5
3,136,411	+		DZA65_RS14375	0.11	-2.5
3,136,411	+		DZA65_RS14375	0.11	-0.2
3,136,411	+		DZA65_RS14375	0.11	-1.0
3,136,412	-		DZA65_RS14375	0.12	+1.2
3,136,420	+		DZA65_RS14375	0.13	-1.2
3,136,420	+		DZA65_RS14375	0.13	+1.3
3,136,420	+		DZA65_RS14375	0.13	+0.5
3,136,421	-		DZA65_RS14375	0.13	+0.1
3,136,421	-		DZA65_RS14375	0.13	+0.5
3,136,421	-		DZA65_RS14375	0.13	+1.2
3,136,433	+		DZA65_RS14375	0.15	-0.5
3,136,433	+		DZA65_RS14375	0.15	-0.8
3,136,433	+		DZA65_RS14375	0.15	+1.1
3,136,434	-		DZA65_RS14375	0.15	+1.2
3,136,440	+		DZA65_RS14375	0.16	-1.6
3,136,440	+		DZA65_RS14375	0.16	+0.4
3,136,599	-		DZA65_RS14375	0.40	-0.2
3,136,599	-		DZA65_RS14375	0.40	-0.8
3,136,599	-		DZA65_RS14375	0.40	+0.1
3,136,639	+		DZA65_RS14375	0.46	+0.4
3,136,652	+		DZA65_RS14375	0.48	+0.5
3,136,676	-		DZA65_RS14375	0.51	+1.5
3,136,728	+		DZA65_RS14375	0.59	-2.3
3,136,728	+		DZA65_RS14375	0.59	+0.4
3,136,729	-		DZA65_RS14375	0.59	-0.1
3,136,731	+		DZA65_RS14375	0.59	-0.7
3,136,731	+		DZA65_RS14375	0.59	-0.4
3,136,732	-		DZA65_RS14375	0.60	-2.0
3,136,788	+		DZA65_RS14375	0.68	-0.8
3,136,788	+		DZA65_RS14375	0.68	+0.5
3,136,788	+		DZA65_RS14375	0.68	+0.9
3,136,788	+		DZA65_RS14375	0.68	-2.3
3,136,788	+		DZA65_RS14375	0.68	+0.5
3,136,788	+		DZA65_RS14375	0.68	+0.2
3,136,788	+		DZA65_RS14375	0.68	-2.1
3,136,788	+		DZA65_RS14375	0.68	-0.8
3,136,788	+		DZA65_RS14375	0.68	-0.2
3,136,789	-		DZA65_RS14375	0.68	+0.8
3,136,789	-		DZA65_RS14375	0.68	+1.1
3,136,789	-		DZA65_RS14375	0.68	-0.2
3,136,789	-		DZA65_RS14375	0.68	-0.4
3,136,789	-		DZA65_RS14375	0.68	-0.5
3,136,789	-		DZA65_RS14375	0.68	+0.8
3,136,789	-		DZA65_RS14375	0.68	-0.2
3,136,790	+		DZA65_RS14375	0.68	-0.5
3,136,790	+		DZA65_RS14375	0.68	-1.1
3,136,791	-		DZA65_RS14375	0.68	+0.5
3,136,799	+				-0.5
3,136,799	+		DZA65_RS14375	0.70	-1.2
3,136,799	+		DZA65_RS14375	0.70	-0.1
3,136,799	+		DZA65_RS14375	0.70	+1.2
3,136,806	+		DZA65_RS14375	0.71	-0.3
3,136,842	-		DZA65_RS14375	0.76	-0.3
3,136,842	-		DZA65_RS14375	0.76	-0.8
3,136,844	+		DZA65_RS14375	0.76	-0.8
3,136,844	+		DZA65_RS14375	0.76	-1.8
3,136,845	-		DZA65_RS14375	0.77	+1.4
3,136,969	+				-0.8
3,136,969	+				+0.3
3,136,969	+				+0.9
3,136,969	+				-1.1
3,136,969	+				+0.9
3,136,970	-				-0.5
3,136,970	-				-1.1
3,136,970	-				-1.3
3,136,970	-				-0.8
3,136,970	-				-1.1
3,136,970	-				+0.9
3,136,981	+				-0.7
3,136,986	-				-2.3
3,136,986	-				+0.1
3,137,015	-				+1.5
3,137,015	-				-0.6
3,137,018	+				+0.4
3,137,019	-				-0.4
3,137,083	+		DZA65_RS14380	0.30	-1.2
3,137,084	-		DZA65_RS14380	0.31	+0.1
3,137,104	+		DZA65_RS14380	0.38	-0.9
3,137,104	+		DZA65_RS14380	0.38	-0.8
3,137,105	-		DZA65_RS14380	0.38	-2.3
3,137,107	+		DZA65_RS14380	0.39	+0.5
3,137,107	+		DZA65_RS14380	0.39	+0.6
3,137,108	-		DZA65_RS14380	0.39	-2.5
3,137,108	-		DZA65_RS14380	0.39	-2.0
3,137,108	-		DZA65_RS14380	0.39	+0.2
3,137,108	-		DZA65_RS14380	0.39	+1.5
3,137,108	-		DZA65_RS14380	0.39	+0.1
3,137,171	+		DZA65_RS14380	0.62	-0.0
3,137,172	-		DZA65_RS14380	0.62	-0.3
3,137,192	-		DZA65_RS14380	0.69	+1.2
3,137,293	+				+0.8
3,137,330	-				-0.8
3,137,391	-				+0.2
3,137,399	+				-1.1
3,137,399	+				+1.5
3,137,399	+				-1.5
3,137,399	+				+0.5
3,137,399	+				-2.2
3,137,399	+				-0.5
3,137,399	+				-0.2
3,137,399	+				+0.7
3,137,400	-				+0.8
3,137,400	-				-0.9
3,137,400	-				+1.3
3,137,400	-				+0.5
3,137,402	+				+0.3
3,137,403	-				+1.2
3,137,415	+				-0.3
3,137,415	+				-1.3
3,137,468	+				-0.7
3,137,468	+				-1.2
3,137,495	-				-0.5
3,137,495	-				-0.5
3,137,558	+				-0.5
3,137,584	+		DZA65_RS14385	0.11	-0.4
3,137,584	+		DZA65_RS14385	0.11	+0.9
3,137,627	+		DZA65_RS14385	0.12	-0.8
3,137,627	+		DZA65_RS14385	0.12	+1.0
3,137,627	+		DZA65_RS14385	0.12	-1.3
3,137,627	+		DZA65_RS14385	0.12	+1.0
3,137,627	+		DZA65_RS14385	0.12	+0.3
3,137,627	+		DZA65_RS14385	0.12	-0.8
3,137,627	+		DZA65_RS14385	0.12	+1.5
3,137,627	+				+0.1
3,137,627	+		DZA65_RS14385	0.12	+1.4
3,137,628	-		DZA65_RS14385	0.12	-0.3
3,137,628	-		DZA65_RS14385	0.12	+0.1
3,137,628	-		DZA65_RS14385	0.12	+0.0
3,137,628	-		DZA65_RS14385	0.12	+1.5
3,137,628	-		DZA65_RS14385	0.12	-0.0
3,137,628	-		DZA65_RS14385	0.12	-1.2
3,137,628	-		DZA65_RS14385	0.12	-0.5
3,137,628	-		DZA65_RS14385	0.12	+0.5
3,137,628	-		DZA65_RS14385	0.12	-1.2
3,137,628	-		DZA65_RS14385	0.12	+1.7
3,137,636	+		DZA65_RS14385	0.13	-0.1
3,137,664	+		DZA65_RS14385	0.14	-0.1
3,137,664	+		DZA65_RS14385	0.14	+0.6
3,137,664	+		DZA65_RS14385	0.14	-0.5
3,137,664	+		DZA65_RS14385	0.14	-2.3
3,137,664	+		DZA65_RS14385	0.14	+0.7
3,137,665	-		DZA65_RS14385	0.14	+1.6
3,137,686	-		DZA65_RS14385	0.14	-0.2
3,137,686	-		DZA65_RS14385	0.14	+0.2
3,137,692	+		DZA65_RS14385	0.15	+0.5
3,137,711	-		DZA65_RS14385	0.15	-1.1
3,137,764	+		DZA65_RS14385	0.17	-0.9
3,137,764	+		DZA65_RS14385	0.17	+0.2
3,137,783	+		DZA65_RS14385	0.18	-0.7
3,137,783	+		DZA65_RS14385	0.18	+0.9
3,137,783	+		DZA65_RS14385	0.18	+1.1
3,137,784	-		DZA65_RS14385	0.18	-0.8
3,137,807	+		DZA65_RS14385	0.19	-2.7
3,137,807	+		DZA65_RS14385	0.19	-1.3
3,137,807	+		DZA65_RS14385	0.19	+0.2
3,137,807	+		DZA65_RS14385	0.19	+3.3
3,137,807	+		DZA65_RS14385	0.19	+1.2
3,137,807	+		DZA65_RS14385	0.19	+0.7
3,137,807	+		DZA65_RS14385	0.19	+0.2
3,137,807	+		DZA65_RS14385	0.19	-0.8
3,137,807	+		DZA65_RS14385	0.19	+0.5
3,137,808	-		DZA65_RS14385	0.19	-2.1
3,137,808	-		DZA65_RS14385	0.19	-1.8
3,137,808	-		DZA65_RS14385	0.19	+0.1
3,137,808	-		DZA65_RS14385	0.19	-1.5
3,137,808	-		DZA65_RS14385	0.19	-0.5
3,137,808	-		DZA65_RS14385	0.19	+0.2
3,137,808	-		DZA65_RS14385	0.19	+0.1
3,137,808	-		DZA65_RS14385	0.19	+0.5
3,137,808	-		DZA65_RS14385	0.19	-0.4
3,137,808	-		DZA65_RS14385	0.19	+0.7
3,137,808	-		DZA65_RS14385	0.19	+0.6
3,137,808	-		DZA65_RS14385	0.19	-1.5
3,137,808	-		DZA65_RS14385	0.19	+0.5
3,137,808	-		DZA65_RS14385	0.19	-1.5
3,137,808	-		DZA65_RS14385	0.19	-0.6
3,137,808	-		DZA65_RS14385	0.19	-0.5
3,137,808	-		DZA65_RS14385	0.19	-1.5
3,137,808	-		DZA65_RS14385	0.19	-1.8
3,137,808	-		DZA65_RS14385	0.19	+0.5
3,137,808	-		DZA65_RS14385	0.19	+0.3
3,137,810	-		DZA65_RS14385	0.19	+2.1
3,137,831	+		DZA65_RS14385	0.20	-2.1
3,137,831	+		DZA65_RS14385	0.20	-0.2
3,137,832	-		DZA65_RS14385	0.20	-1.1
3,137,832	-		DZA65_RS14385	0.20	+0.6
3,137,891	+		DZA65_RS14385	0.22	+0.3
3,137,891	+		DZA65_RS14385	0.22	-1.1
3,137,942	-		DZA65_RS14385	0.24	+0.5
3,137,951	+		DZA65_RS14385	0.24	+0.5
3,137,951	+		DZA65_RS14385	0.24	+0.5
3,137,952	-		DZA65_RS14385	0.24	-1.5
3,138,083	+		DZA65_RS14385	0.29	-1.5
3,138,084	-		DZA65_RS14385	0.29	-1.1
3,138,107	+		DZA65_RS14385	0.30	-0.7
3,138,107	+		DZA65_RS14385	0.30	+0.8
3,138,107	+		DZA65_RS14385	0.30	-2.7
3,138,108	-		DZA65_RS14385	0.30	+0.3
3,138,108	-		DZA65_RS14385	0.30	+0.7
3,138,108	-		DZA65_RS14385	0.30	+0.2
3,138,129	-		DZA65_RS14385	0.31	-2.0
3,138,129	-		DZA65_RS14385	0.31	+0.6
3,138,149	+		DZA65_RS14385	0.31	+0.2
3,138,149	+		DZA65_RS14385	0.31	-0.5
3,138,149	+		DZA65_RS14385	0.31	-0.3
3,138,150	-		DZA65_RS14385	0.31	-1.1
3,138,150	-		DZA65_RS14385	0.31	-1.1
3,138,150	-		DZA65_RS14385	0.31	+1.0
3,138,150	-		DZA65_RS14385	0.31	-2.5
3,138,150	-		DZA65_RS14385	0.31	-1.2
3,138,150	-		DZA65_RS14385	0.31	+1.8
3,138,150	-				+2.5
3,138,150	-		DZA65_RS14385	0.31	+0.6
3,138,150	-		DZA65_RS14385	0.31	-2.3
3,138,207	-		DZA65_RS14385	0.33	-0.0
3,138,323	+		DZA65_RS14385	0.38	-2.1
3,138,323	+		DZA65_RS14385	0.38	+0.8
3,138,323	+		DZA65_RS14385	0.38	+0.1
3,138,323	+		DZA65_RS14385	0.38	-1.5
3,138,323	+		DZA65_RS14385	0.38	+0.2
3,138,323	+		DZA65_RS14385	0.38	+1.9
3,138,323	+		DZA65_RS14385	0.38	-0.3
3,138,323	+		DZA65_RS14385	0.38	+0.5
3,138,323	+		DZA65_RS14385	0.38	+0.3
3,138,323	+		DZA65_RS14385	0.38	-0.6
3,138,323	+		DZA65_RS14385	0.38	-0.5
3,138,323	+		DZA65_RS14385	0.38	+0.2
3,138,323	+		DZA65_RS14385	0.38	+0.1
3,138,323	+		DZA65_RS14385	0.38	-1.1
3,138,324	-		DZA65_RS14385	0.38	+1.2
3,138,324	-		DZA65_RS14385	0.38	-0.7
3,138,324	-		DZA65_RS14385	0.38	+0.3
3,138,324	-		DZA65_RS14385	0.38	-0.5
3,138,324	-		DZA65_RS14385	0.38	+1.4
3,138,325	+		DZA65_RS14385	0.38	+1.6
3,138,325	+		DZA65_RS14385	0.38	+1.1
3,138,325	+				-0.5
3,138,325	+		DZA65_RS14385	0.38	-1.7
3,138,350	+		DZA65_RS14385	0.39	-1.5
3,138,350	+		DZA65_RS14385	0.39	-1.2
3,138,350	+		DZA65_RS14385	0.39	+2.4
3,138,350	+		DZA65_RS14385	0.39	+0.5
3,138,350	+		DZA65_RS14385	0.39	+3.2
3,138,351	-		DZA65_RS14385	0.39	+0.8
3,138,351	-		DZA65_RS14385	0.39	+0.5
3,138,365	+				+0.9
3,138,365	+		DZA65_RS14385	0.39	+0.4
3,138,365	+		DZA65_RS14385	0.39	-0.5
3,138,366	-		DZA65_RS14385	0.39	+0.5
3,138,386	-		DZA65_RS14385	0.40	+1.1
3,138,391	+		DZA65_RS14385	0.40	+0.5
3,138,391	+		DZA65_RS14385	0.40	-1.5
3,138,492	+		DZA65_RS14385	0.44	+0.9
3,138,493	-		DZA65_RS14385	0.44	-0.5
3,138,533	+		DZA65_RS14385	0.45	-0.4
3,138,533	+		DZA65_RS14385	0.45	-0.9
3,138,533	+		DZA65_RS14385	0.45	+1.0
3,138,533	+		DZA65_RS14385	0.45	+0.5
3,138,534	-		DZA65_RS14385	0.45	+1.1
3,138,534	-		DZA65_RS14385	0.45	+0.4
3,138,534	-		DZA65_RS14385	0.45	-0.3
3,138,534	-		DZA65_RS14385	0.45	+0.3
3,138,534	-		DZA65_RS14385	0.45	+1.3
3,138,580	-		DZA65_RS14385	0.47	-1.4
3,138,611	-		DZA65_RS14385	0.48	-2.0
3,138,611	-		DZA65_RS14385	0.48	-1.1
3,138,651	+		DZA65_RS14385	0.50	-0.2
3,138,662	+		DZA65_RS14385	0.50	-1.0
3,138,686	+				+1.2
3,138,686	+		DZA65_RS14385	0.51	+0.3
3,138,687	-		DZA65_RS14385	0.51	+0.2
3,138,688	+		DZA65_RS14385	0.51	+0.5
3,138,688	+		DZA65_RS14385	0.51	-0.1
3,138,688	+		DZA65_RS14385	0.51	+0.3
3,138,688	+		DZA65_RS14385	0.51	+0.5
3,138,688	+		DZA65_RS14385	0.51	+2.7
3,138,688	+		DZA65_RS14385	0.51	+1.3
3,138,688	+		DZA65_RS14385	0.51	+1.7
3,138,688	+		DZA65_RS14385	0.51	+0.5
3,138,688	+		DZA65_RS14385	0.51	-0.1
3,138,688	+		DZA65_RS14385	0.51	-1.0
3,138,689	-		DZA65_RS14385	0.51	-0.3
3,138,689	-		DZA65_RS14385	0.51	-1.8
3,138,689	-		DZA65_RS14385	0.51	+0.7
3,138,689	-		DZA65_RS14385	0.51	-1.5
3,138,752	-		DZA65_RS14385	0.53	+0.5
3,138,773	-		DZA65_RS14385	0.54	-0.5
3,138,773	-		DZA65_RS14385	0.54	+0.2
3,138,830	+		DZA65_RS14385	0.56	-0.4
3,138,830	+		DZA65_RS14385	0.56	-1.0
3,138,830	+		DZA65_RS14385	0.56	-0.5
3,138,830	+		DZA65_RS14385	0.56	+1.1
3,138,830	+		DZA65_RS14385	0.56	-2.4
3,138,831	-		DZA65_RS14385	0.56	+0.7
3,138,831	-		DZA65_RS14385	0.56	-1.5
3,138,831	-		DZA65_RS14385	0.56	-0.6
3,138,831	-		DZA65_RS14385	0.56	-0.3
3,138,833	+		DZA65_RS14385	0.56	+0.0
3,138,834	-		DZA65_RS14385	0.56	-1.2
3,138,834	-		DZA65_RS14385	0.56	-0.9
3,138,834	-		DZA65_RS14385	0.56	+0.2
3,138,968	+		DZA65_RS14385	0.61	+1.8
3,138,969	-		DZA65_RS14385	0.61	+1.0
3,139,025	+		DZA65_RS14385	0.63	-0.2
3,139,025	+		DZA65_RS14385	0.63	-0.8
3,139,026	-		DZA65_RS14385	0.63	+0.9
3,139,033	+		DZA65_RS14385	0.64	+1.1
3,139,033	+		DZA65_RS14385	0.64	+0.9
3,139,079	+		DZA65_RS14385	0.65	-1.3
3,139,080	-		DZA65_RS14385	0.65	+1.2
3,139,135	+		DZA65_RS14385	0.67	-1.1
3,139,136	-		DZA65_RS14385	0.67	-1.5
3,139,147	+		DZA65_RS14385	0.68	+0.6
3,139,148	-		DZA65_RS14385	0.68	+0.5
3,139,148	-		DZA65_RS14385	0.68	+0.8
3,139,156	+		DZA65_RS14385	0.68	-0.2
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3,139,832	+				-0.0
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3,139,832	+				-2.3
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3,140,766	+				+1.7
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