Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14175

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,036,659	+				-0.8
3,036,660	-				+0.5
3,036,662	-				+0.6
3,036,669	+				+0.7
3,036,669	+				-1.1
3,036,669	+				-0.4
3,036,670	-				+0.5
3,036,670	-				+0.8
3,036,688	-				+0.5
3,036,688	-				-0.1
3,036,754	+				-0.5
3,036,755	-				-0.1
3,036,755	-				-2.0
3,036,755	-				-2.1
3,036,755	-				-1.4
3,036,755	-				-1.5
3,036,755	-				-1.5
3,036,755	-				+0.5
3,036,755	-				+2.3
3,036,755	-				-1.4
3,036,755	-				+0.7
3,036,755	-				-1.5
3,036,755	-				-0.4
3,036,755	-				+1.5
3,036,755	-				+0.1
3,036,793	+				+0.5
3,036,793	+				-1.5
3,036,793	+				-0.5
3,036,794	-				-0.1
3,036,794	-				-1.3
3,036,794	-				+2.7
3,036,794	-				-1.5
3,036,794	-				-1.2
3,036,794	-				+0.9
3,036,794	-				-0.3
3,036,810	+				+0.9
3,036,810	+				-1.0
3,036,815	+				-1.3
3,036,816	-				+1.0
3,036,821	-				-0.5
3,036,836	+		DZA65_RS14170	0.12	-0.4
3,036,837	-		DZA65_RS14170	0.12	-1.8
3,036,998	+		DZA65_RS14170	0.35	+0.2
3,036,999	-		DZA65_RS14170	0.35	+0.6
3,037,071	+		DZA65_RS14170	0.45	+0.6
3,037,236	-		DZA65_RS14170	0.68	+0.2
3,037,263	+		DZA65_RS14170	0.72	+0.1
3,037,334	-		DZA65_RS14170	0.82	-1.4
3,037,343	+		DZA65_RS14170	0.83	+0.9
3,037,343	+		DZA65_RS14170	0.83	+0.1
3,037,343	+		DZA65_RS14170	0.83	+0.3
3,037,344	-		DZA65_RS14170	0.83	-1.5
3,037,344	-		DZA65_RS14170	0.83	-0.8
3,037,344	-		DZA65_RS14170	0.83	+1.1
3,037,344	-		DZA65_RS14170	0.83	+1.5
3,037,344	-		DZA65_RS14170	0.83	-1.0
3,037,344	-		DZA65_RS14170	0.83	+0.1
3,037,344	-		DZA65_RS14170	0.83	-1.5
3,037,344	-		DZA65_RS14170	0.83	-0.1
3,037,344	-		DZA65_RS14170	0.83	-2.6
3,037,347	+		DZA65_RS14170	0.84	-0.7
3,037,347	+		DZA65_RS14170	0.84	-0.4
3,037,347	+		DZA65_RS14170	0.84	+0.1
3,037,348	-		DZA65_RS14170	0.84	-0.1
3,037,348	-		DZA65_RS14170	0.84	-0.4
3,037,348	-		DZA65_RS14170	0.84	+0.5
3,037,348	-		DZA65_RS14170	0.84	+0.5
3,037,354	+		DZA65_RS14170	0.85	-1.8
3,037,370	+		DZA65_RS14170	0.87	-0.8
3,037,370	+		DZA65_RS14170	0.87	+0.3
3,037,378	+		DZA65_RS14170	0.88	+0.9
3,037,378	+		DZA65_RS14170	0.88	-1.7
3,037,379	-				+1.5
3,037,397	+				+0.9
3,037,397	+				-0.1
3,037,405	+				+0.6
3,037,424	+				+0.4
3,037,477	-				+0.7
3,037,477	-				-1.8
3,037,514	+				-1.7
3,037,515	-				+1.5
3,037,515	-				+0.0
3,037,516	+				-0.2
3,037,516	+				-0.3
3,037,517	-				+0.8
3,037,526	-				-1.5
3,037,553	+				-2.1
3,037,553	+				-0.3
3,037,554	-				+0.2
3,037,565	+				+1.3
3,037,566	-				+2.1
3,037,566	-				+0.3
3,037,768	+		DZA65_RS14175	0.22	-1.8
3,037,769	-		DZA65_RS14175	0.23	+0.8
3,037,783	+		DZA65_RS14175	0.24	-0.8
3,037,784	-		DZA65_RS14175	0.24	-1.3
3,037,784	-		DZA65_RS14175	0.24	-3.1
3,037,882	+		DZA65_RS14175	0.33	-1.5
3,037,882	+		DZA65_RS14175	0.33	+1.3
3,037,882	+		DZA65_RS14175	0.33	+0.7
3,037,882	+		DZA65_RS14175	0.33	+1.3
3,037,883	-		DZA65_RS14175	0.33	-0.8
3,037,883	-		DZA65_RS14175	0.33	-2.5
3,037,883	-		DZA65_RS14175	0.33	-0.9
3,037,883	-		DZA65_RS14175	0.33	-0.4
3,037,886	+		DZA65_RS14175	0.33	-0.5
3,037,887	-		DZA65_RS14175	0.33	+0.5
3,037,893	+		DZA65_RS14175	0.34	+1.1
3,037,894	-		DZA65_RS14175	0.34	-0.7
3,037,894	-		DZA65_RS14175	0.34	-0.3
3,037,909	+		DZA65_RS14175	0.35	-0.4
3,037,941	+		DZA65_RS14175	0.38	-1.1
3,037,941	+		DZA65_RS14175	0.38	-0.3
3,037,942	-		DZA65_RS14175	0.38	-3.4
3,037,977	+		DZA65_RS14175	0.41	+2.5
3,038,027	+		DZA65_RS14175	0.45	+0.9
3,038,027	+		DZA65_RS14175	0.45	-1.3
3,038,027	+		DZA65_RS14175	0.45	-1.8
3,038,027	+		DZA65_RS14175	0.45	+1.7
3,038,027	+		DZA65_RS14175	0.45	-0.3
3,038,027	+		DZA65_RS14175	0.45	-1.3
3,038,027	+		DZA65_RS14175	0.45	-1.5
3,038,028	-		DZA65_RS14175	0.45	-1.3
3,038,028	-		DZA65_RS14175	0.45	+1.0
3,038,028	-		DZA65_RS14175	0.45	-0.8
3,038,085	+		DZA65_RS14175	0.50	-0.1
3,038,085	+		DZA65_RS14175	0.50	+3.0
3,038,086	-				+1.5
3,038,086	-		DZA65_RS14175	0.51	-1.8
3,038,089	+		DZA65_RS14175	0.51	-0.5
3,038,099	+		DZA65_RS14175	0.52	-1.5
3,038,099	+		DZA65_RS14175	0.52	+0.5
3,038,099	+		DZA65_RS14175	0.52	+0.8
3,038,099	+		DZA65_RS14175	0.52	+1.1
3,038,099	+		DZA65_RS14175	0.52	-0.1
3,038,099	+		DZA65_RS14175	0.52	+0.8
3,038,100	-		DZA65_RS14175	0.52	-0.5
3,038,100	-		DZA65_RS14175	0.52	-1.1
3,038,100	-		DZA65_RS14175	0.52	+0.5
3,038,100	-		DZA65_RS14175	0.52	+0.9
3,038,228	-		DZA65_RS14175	0.63	+0.4
3,038,228	-		DZA65_RS14175	0.63	+0.4
3,038,377	+		DZA65_RS14175	0.76	+1.5
3,038,377	+		DZA65_RS14175	0.76	+0.9
3,038,377	+		DZA65_RS14175	0.76	-2.1
3,038,377	+		DZA65_RS14175	0.76	+1.2
3,038,382	+		DZA65_RS14175	0.77	+1.0
3,038,382	+		DZA65_RS14175	0.77	-0.3
3,038,383	-		DZA65_RS14175	0.77	+0.8
3,038,383	-		DZA65_RS14175	0.77	+0.9
3,038,383	-		DZA65_RS14175	0.77	+1.6
3,038,389	+		DZA65_RS14175	0.77	+0.4
3,038,389	+		DZA65_RS14175	0.77	-2.1
3,038,436	-		DZA65_RS14175	0.81	+0.3
3,038,456	+		DZA65_RS14175	0.83	-1.7
3,038,456	+		DZA65_RS14175	0.83	+0.8
3,038,456	+		DZA65_RS14175	0.83	+1.3
3,038,457	-		DZA65_RS14175	0.83	+1.2
3,038,457	-		DZA65_RS14175	0.83	-0.9
3,038,457	-		DZA65_RS14175	0.83	-0.9
3,038,457	-		DZA65_RS14175	0.83	-0.5
3,038,472	+		DZA65_RS14175	0.85	+1.8
3,038,472	+		DZA65_RS14175	0.85	+0.5
3,038,472	+		DZA65_RS14175	0.85	+1.0
3,038,472	+		DZA65_RS14175	0.85	-0.1
3,038,473	-		DZA65_RS14175	0.85	-0.5
3,038,473	-		DZA65_RS14175	0.85	-2.5
3,038,473	-		DZA65_RS14175	0.85	+2.8
3,038,474	+		DZA65_RS14175	0.85	+0.5
3,038,474	+		DZA65_RS14175	0.85	+0.7
3,038,474	+		DZA65_RS14175	0.85	+0.7
3,038,475	-		DZA65_RS14175	0.85	-1.8
3,038,475	-		DZA65_RS14175	0.85	+0.3
3,038,475	-		DZA65_RS14175	0.85	-1.1
3,038,475	-		DZA65_RS14175	0.85	+2.1
3,038,531	+		DZA65_RS14175	0.90	-2.1
3,038,628	+				-2.1
3,038,629	-				-1.4
3,038,629	-				-1.1
3,038,629	-				+2.6
3,038,630	+				+1.0
3,038,630	+				+0.0
3,038,630	+				+0.7
3,038,630	+				-0.5
3,038,631	-				+0.1
3,038,631	-				+0.8
3,038,631	-				-2.5
3,038,631	-				+0.1
3,038,631	-				+0.6
3,038,631	-				-0.5
3,038,741	+				-1.0
3,038,741	+				+1.6
3,038,742	-				+0.5
3,038,779	+				+0.2
3,038,779	+				-1.8
3,038,779	+				-0.5
3,038,779	+				-1.1
3,038,779	+				+0.8
3,038,779	+				-2.5
3,038,779	+				-1.5
3,038,779	+				+0.8
3,038,779	+				-0.8
3,038,779	+				-1.1
3,038,779	+				+1.3
3,038,780	-				+0.5
3,038,780	-				+0.1
3,038,780	-				+1.1
3,038,780	-				-0.7
3,038,780	-				-0.5
3,038,780	-				-0.3
3,038,780	-				+1.1
3,038,780	-				+1.2
3,038,783	+				+1.5
3,038,783	+				-1.3
3,038,783	+				-0.7
3,038,784	-				-1.5
3,038,784	-				+0.8
3,038,784	-				-1.3
3,038,784	-				-0.7
3,038,784	-				-1.2
3,038,784	-				+0.5
3,038,848	+				+2.0
3,038,848	+				+0.7
3,038,848	+				+0.8
3,038,935	+		DZA65_RS14180	0.11	-1.5
3,038,939	+		DZA65_RS14180	0.12	+0.1
3,038,939	+		DZA65_RS14180	0.12	+1.6
3,038,939	+		DZA65_RS14180	0.12	+0.8
3,038,939	+		DZA65_RS14180	0.12	-0.9
3,038,940	-		DZA65_RS14180	0.12	-0.1
3,038,940	-		DZA65_RS14180	0.12	+2.2
3,038,940	-		DZA65_RS14180	0.12	+1.1
3,038,940	-		DZA65_RS14180	0.12	+1.1
3,038,996	+		DZA65_RS14180	0.15	+0.9
3,039,015	+		DZA65_RS14180	0.16	-0.3
3,039,015	+		DZA65_RS14180	0.16	+1.2
3,039,015	+		DZA65_RS14180	0.16	+0.2
3,039,015	+		DZA65_RS14180	0.16	-0.8
3,039,015	+		DZA65_RS14180	0.16	-0.3
3,039,016	-		DZA65_RS14180	0.16	+0.5
3,039,016	-		DZA65_RS14180	0.16	-0.5
3,039,016	-		DZA65_RS14180	0.16	-0.4
3,039,030	+		DZA65_RS14180	0.16	-0.7
3,039,030	+		DZA65_RS14180	0.16	-0.8
3,039,030	+				-1.1
3,039,030	+		DZA65_RS14180	0.16	+0.7
3,039,048	-		DZA65_RS14180	0.17	-1.5
3,039,060	+		DZA65_RS14180	0.18	-0.7
3,039,060	+				+0.1
3,039,183	+		DZA65_RS14180	0.24	-1.5
3,039,210	+		DZA65_RS14180	0.26	-0.1
3,039,210	+		DZA65_RS14180	0.26	+0.6
3,039,211	-		DZA65_RS14180	0.26	-2.3
3,039,211	-		DZA65_RS14180	0.26	-0.2
3,039,211	-		DZA65_RS14180	0.26	-0.8
3,039,211	-		DZA65_RS14180	0.26	-1.4
3,039,374	+		DZA65_RS14180	0.34	-0.7
3,039,374	+		DZA65_RS14180	0.34	-0.3
3,039,374	+		DZA65_RS14180	0.34	+1.3
3,039,374	+		DZA65_RS14180	0.34	+0.1
3,039,374	+		DZA65_RS14180	0.34	+0.3
3,039,375	-		DZA65_RS14180	0.34	+0.2
3,039,375	-		DZA65_RS14180	0.34	-0.3
3,039,375	-		DZA65_RS14180	0.34	+0.5
3,039,375	-				-1.5
3,039,375	-		DZA65_RS14180	0.34	+0.1
3,039,375	-		DZA65_RS14180	0.34	+1.0
3,039,474	+		DZA65_RS14180	0.39	-0.3
3,039,476	+		DZA65_RS14180	0.40	-0.7
3,039,483	+		DZA65_RS14180	0.40	+1.5
3,039,484	-		DZA65_RS14180	0.40	-0.2
3,039,484	-		DZA65_RS14180	0.40	-1.5
3,039,552	+		DZA65_RS14180	0.44	+1.1
3,039,603	+		DZA65_RS14180	0.46	+0.9
3,039,603	+		DZA65_RS14180	0.46	+1.3
3,039,603	+		DZA65_RS14180	0.46	+0.8
3,039,603	+		DZA65_RS14180	0.46	+0.5
3,039,608	+		DZA65_RS14180	0.46	+0.6
3,039,629	+		DZA65_RS14180	0.48	-0.5
3,039,632	+		DZA65_RS14180	0.48	-0.3
3,039,632	+		DZA65_RS14180	0.48	+0.7
3,039,633	-		DZA65_RS14180	0.48	+2.1