Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13730

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,943,359	+				-1.5
2,943,380	-				-0.0
2,943,420	+				+0.7
2,943,535	+				+0.2
2,943,556	-				-0.1
2,943,570	+				+0.8
2,943,615	-				+0.8
2,943,664	+				+2.2
2,943,685	-				+0.6
2,943,804	+				+1.5
2,943,805	-				+0.7
2,943,805	-				+1.5
2,943,839	+		DZA65_RS13725	0.13	-1.1
2,943,839	+		DZA65_RS13725	0.13	+1.3
2,943,839	+		DZA65_RS13725	0.13	-1.9
2,943,839	+		DZA65_RS13725	0.13	-0.0
2,943,839	+		DZA65_RS13725	0.13	-0.3
2,943,839	+		DZA65_RS13725	0.13	-0.5
2,943,839	+		DZA65_RS13725	0.13	+0.4
2,943,840	-		DZA65_RS13725	0.13	+0.2
2,943,840	-		DZA65_RS13725	0.13	-0.9
2,943,840	-		DZA65_RS13725	0.13	+0.4
2,943,840	-		DZA65_RS13725	0.13	+0.4
2,943,841	+		DZA65_RS13725	0.14	+0.2
2,943,841	+				-0.5
2,943,842	-		DZA65_RS13725	0.14	-0.9
2,943,842	-		DZA65_RS13725	0.14	-0.1
2,943,884	-		DZA65_RS13725	0.21	-0.8
2,943,886	+		DZA65_RS13725	0.22	-0.8
2,943,887	-		DZA65_RS13725	0.22	+1.8
2,943,917	+		DZA65_RS13725	0.27	-2.7
2,943,935	+		DZA65_RS13725	0.30	-1.3
2,943,936	-		DZA65_RS13725	0.31	+0.3
2,943,936	-		DZA65_RS13725	0.31	+0.5
2,943,936	-		DZA65_RS13725	0.31	-1.5
2,943,968	+		DZA65_RS13725	0.36	+1.1
2,943,968	+		DZA65_RS13725	0.36	+0.6
2,943,969	-		DZA65_RS13725	0.37	+1.7
2,944,009	+		DZA65_RS13725	0.44	-0.5
2,944,010	-		DZA65_RS13725	0.44	-0.2
2,944,026	+		DZA65_RS13725	0.47	-1.3
2,944,026	+		DZA65_RS13725	0.47	+1.6
2,944,026	+		DZA65_RS13725	0.47	-1.3
2,944,027	-		DZA65_RS13725	0.47	+0.5
2,944,027	-		DZA65_RS13725	0.47	+0.5
2,944,027	-		DZA65_RS13725	0.47	+0.3
2,944,027	-		DZA65_RS13725	0.47	-0.1
2,944,027	-		DZA65_RS13725	0.47	+0.7
2,944,027	-		DZA65_RS13725	0.47	-0.8
2,944,027	-		DZA65_RS13725	0.47	-0.5
2,944,047	+		DZA65_RS13725	0.51	-1.1
2,944,047	+		DZA65_RS13725	0.51	+1.2
2,944,048	-		DZA65_RS13725	0.51	+0.3
2,944,048	-		DZA65_RS13725	0.51	-1.4
2,944,057	+		DZA65_RS13725	0.52	-0.9
2,944,057	+		DZA65_RS13725	0.52	-0.4
2,944,057	+		DZA65_RS13725	0.52	+1.0
2,944,057	+		DZA65_RS13725	0.52	-2.1
2,944,067	+		DZA65_RS13725	0.54	+0.8
2,944,204	+		DZA65_RS13725	0.79	-0.2
2,944,204	+		DZA65_RS13725	0.79	+0.3
2,944,204	+		DZA65_RS13725	0.79	+1.0
2,944,257	+		DZA65_RS13725	0.88	-0.9
2,944,258	-		DZA65_RS13725	0.89	-0.5
2,944,258	-		DZA65_RS13725	0.89	+0.7
2,944,258	-		DZA65_RS13725	0.89	+0.7
2,944,258	-		DZA65_RS13725	0.89	+0.1
2,944,290	-				+1.0
2,944,290	-				+0.3
2,944,298	+				-0.5
2,944,299	-				+0.9
2,944,354	+				-0.5
2,944,378	+				+0.2
2,944,378	+				-0.7
2,944,393	+				+0.5
2,944,425	-		DZA65_RS13730	0.13	-0.5
2,944,426	+		DZA65_RS13730	0.13	-2.5
2,944,495	-		DZA65_RS13730	0.25	+1.2
2,944,496	+		DZA65_RS13730	0.25	-0.7
2,944,497	-				-0.5
2,944,497	-		DZA65_RS13730	0.26	-0.7
2,944,497	-		DZA65_RS13730	0.26	-1.9
2,944,497	-		DZA65_RS13730	0.26	-0.9
2,944,497	-		DZA65_RS13730	0.26	-0.9
2,944,497	-		DZA65_RS13730	0.26	-0.5
2,944,502	-		DZA65_RS13730	0.26	-0.3
2,944,502	-		DZA65_RS13730	0.26	-0.3
2,944,528	+		DZA65_RS13730	0.31	-0.1
2,944,579	+		DZA65_RS13730	0.40	-0.8
2,944,579	+		DZA65_RS13730	0.40	+0.6
2,944,615	+		DZA65_RS13730	0.46	-0.8
2,944,615	+		DZA65_RS13730	0.46	+0.5
2,944,744	+		DZA65_RS13730	0.68	-1.2
2,944,744	+		DZA65_RS13730	0.68	-1.0
2,944,744	+		DZA65_RS13730	0.68	-0.2
2,944,745	-		DZA65_RS13730	0.68	-1.1
2,944,745	-		DZA65_RS13730	0.68	+0.2
2,944,745	-		DZA65_RS13730	0.68	-1.1
2,944,745	-		DZA65_RS13730	0.68	-0.8
2,944,849	+		DZA65_RS13730	0.86	+1.7
2,944,853	-		DZA65_RS13730	0.87	+0.9
2,944,853	-		DZA65_RS13730	0.87	+0.1
2,944,855	+		DZA65_RS13730	0.87	+0.2
2,944,855	+		DZA65_RS13730	0.87	+1.3
2,944,887	+				+1.3
2,944,898	-				+0.9
2,944,898	-				-1.9
2,944,926	-				-0.0
2,944,949	+				-0.3
2,944,950	-				+0.7
2,944,977	+				+0.5
2,944,978	-				+0.9
2,945,030	-				+0.1
2,945,036	-				+0.4
2,945,036	-				-0.5
2,945,036	-				+0.1
2,945,036	-				+0.8
2,945,126	-		DZA65_RS13735	0.14	+1.9
2,945,174	+		DZA65_RS13735	0.19	-0.2
2,945,174	+				-1.1
2,945,174	+		DZA65_RS13735	0.19	+1.3
2,945,174	+		DZA65_RS13735	0.19	-0.1
2,945,175	-		DZA65_RS13735	0.19	-0.2
2,945,175	-		DZA65_RS13735	0.19	+0.4
2,945,175	-		DZA65_RS13735	0.19	+1.6
2,945,175	-		DZA65_RS13735	0.19	-1.3
2,945,175	-		DZA65_RS13735	0.19	-1.1
2,945,175	-		DZA65_RS13735	0.19	+1.8
2,945,175	-		DZA65_RS13735	0.19	+0.5
2,945,194	+		DZA65_RS13735	0.21	+0.5
2,945,194	+		DZA65_RS13735	0.21	+0.7
2,945,195	-		DZA65_RS13735	0.21	+0.6
2,945,195	-		DZA65_RS13735	0.21	+0.3
2,945,195	-		DZA65_RS13735	0.21	+2.7
2,945,258	+		DZA65_RS13735	0.27	-0.0
2,945,258	+		DZA65_RS13735	0.27	-1.2
2,945,259	-		DZA65_RS13735	0.27	+0.8
2,945,323	+		DZA65_RS13735	0.33	-1.1
2,945,339	+		DZA65_RS13735	0.34	+0.5
2,945,339	+		DZA65_RS13735	0.34	+0.7
2,945,339	+		DZA65_RS13735	0.34	+0.9
2,945,340	-		DZA65_RS13735	0.34	-0.3
2,945,340	-		DZA65_RS13735	0.34	+0.9
2,945,340	-		DZA65_RS13735	0.34	-2.7
2,945,340	-		DZA65_RS13735	0.34	-0.3
2,945,343	+		DZA65_RS13735	0.35	+1.2
2,945,343	+		DZA65_RS13735	0.35	+0.8
2,945,343	+		DZA65_RS13735	0.35	-1.1
2,945,343	+		DZA65_RS13735	0.35	-1.3
2,945,343	+		DZA65_RS13735	0.35	-0.2
2,945,344	-		DZA65_RS13735	0.35	+0.8
2,945,344	-		DZA65_RS13735	0.35	+0.8
2,945,344	-		DZA65_RS13735	0.35	+1.8
2,945,344	-		DZA65_RS13735	0.35	-1.7
2,945,370	+		DZA65_RS13735	0.37	+0.8
2,945,371	-		DZA65_RS13735	0.37	+1.5
2,945,400	+		DZA65_RS13735	0.40	-0.9
2,945,400	+		DZA65_RS13735	0.40	-0.9
2,945,400	+		DZA65_RS13735	0.40	-0.0
2,945,400	+		DZA65_RS13735	0.40	-0.5
2,945,401	-		DZA65_RS13735	0.40	-1.9
2,945,401	-		DZA65_RS13735	0.40	+0.3
2,945,401	-		DZA65_RS13735	0.40	-0.9
2,945,401	-		DZA65_RS13735	0.40	-1.5
2,945,401	-		DZA65_RS13735	0.40	+0.1
2,945,401	-		DZA65_RS13735	0.40	+1.1
2,945,401	-		DZA65_RS13735	0.40	-2.1
2,945,439	+		DZA65_RS13735	0.44	+0.7
2,945,439	+		DZA65_RS13735	0.44	-1.9
2,945,439	+		DZA65_RS13735	0.44	-0.7
2,945,439	+		DZA65_RS13735	0.44	+1.1
2,945,439	+		DZA65_RS13735	0.44	+0.8
2,945,439	+		DZA65_RS13735	0.44	+0.4
2,945,439	+		DZA65_RS13735	0.44	-0.9
2,945,440	-		DZA65_RS13735	0.44	+1.6
2,945,440	-		DZA65_RS13735	0.44	-0.9
2,945,440	-		DZA65_RS13735	0.44	-0.7
2,945,440	-		DZA65_RS13735	0.44	+0.1
2,945,440	-		DZA65_RS13735	0.44	-1.6
2,945,510	-		DZA65_RS13735	0.50	-0.3
2,945,510	-		DZA65_RS13735	0.50	-2.3
2,945,553	+		DZA65_RS13735	0.54	-1.3
2,945,553	+		DZA65_RS13735	0.54	+1.5
2,945,554	-		DZA65_RS13735	0.55	-1.0
2,945,559	+		DZA65_RS13735	0.55	-1.9
2,945,560	-		DZA65_RS13735	0.55	-0.9
2,945,560	-		DZA65_RS13735	0.55	-0.5
2,945,560	-		DZA65_RS13735	0.55	-0.3
2,945,587	+		DZA65_RS13735	0.58	-1.0
2,945,587	+		DZA65_RS13735	0.58	-0.2
2,945,587	+		DZA65_RS13735	0.58	+0.2
2,945,587	+		DZA65_RS13735	0.58	+1.1
2,945,588	-		DZA65_RS13735	0.58	-1.1
2,945,588	-		DZA65_RS13735	0.58	+0.6
2,945,632	-		DZA65_RS13735	0.62	+2.1
2,945,705	-		DZA65_RS13735	0.69	-0.1
2,945,712	-		DZA65_RS13735	0.69	+1.5
2,945,712	-		DZA65_RS13735	0.69	+0.8
2,945,725	+		DZA65_RS13735	0.71	-0.8
2,945,725	+		DZA65_RS13735	0.71	+0.2
2,945,725	+		DZA65_RS13735	0.71	-0.2
2,945,725	+		DZA65_RS13735	0.71	+1.1
2,945,726	-		DZA65_RS13735	0.71	-0.1
2,945,726	-		DZA65_RS13735	0.71	+1.1
2,945,726	-		DZA65_RS13735	0.71	+0.0
2,945,857	+		DZA65_RS13735	0.83	-1.9
2,945,858	-		DZA65_RS13735	0.83	-2.5
2,945,858	-		DZA65_RS13735	0.83	-0.8
2,945,859	+		DZA65_RS13735	0.83	+0.1
2,945,859	+		DZA65_RS13735	0.83	-0.1
2,945,860	-		DZA65_RS13735	0.83	-1.5
2,945,860	-		DZA65_RS13735	0.83	-0.1
2,945,860	-		DZA65_RS13735	0.83	+1.4
2,945,860	-		DZA65_RS13735	0.83	-0.1
2,945,860	-		DZA65_RS13735	0.83	+0.1
2,945,860	-		DZA65_RS13735	0.83	+0.1
2,945,860	-		DZA65_RS13735	0.83	+0.5
2,945,879	+		DZA65_RS13735	0.85	-0.8
2,945,879	+		DZA65_RS13735	0.85	-0.3
2,945,879	+		DZA65_RS13735	0.85	-0.8
2,945,879	+		DZA65_RS13735	0.85	-1.3
2,945,880	-		DZA65_RS13735	0.85	-0.3
2,945,880	-		DZA65_RS13735	0.85	-0.1
2,945,880	-		DZA65_RS13735	0.85	+1.6
2,945,880	-		DZA65_RS13735	0.85	+1.1
2,945,880	-		DZA65_RS13735	0.85	+0.2
2,945,880	-		DZA65_RS13735	0.85	-0.4
2,945,880	-		DZA65_RS13735	0.85	+1.3
2,945,880	-		DZA65_RS13735	0.85	+0.0
2,945,896	+		DZA65_RS13735	0.87	+1.7
2,945,896	+		DZA65_RS13735	0.87	+0.1
2,945,896	+		DZA65_RS13735	0.87	-0.3
2,945,897	-		DZA65_RS13735	0.87	+1.6
2,945,897	-		DZA65_RS13735	0.87	+0.8
2,945,898	+		DZA65_RS13735	0.87	-1.5
2,945,898	+		DZA65_RS13735	0.87	+1.9
2,945,898	+		DZA65_RS13735	0.87	-0.3
2,945,898	+		DZA65_RS13735	0.87	+0.3
2,945,898	+		DZA65_RS13735	0.87	+0.3
2,945,899	-		DZA65_RS13735	0.87	-0.9