Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13545

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,908,241	+		DZA65_RS13540	0.66	-2.1
2,908,343	+		DZA65_RS13540	0.74	-1.4
2,908,344	-		DZA65_RS13540	0.74	-1.4
2,908,344	-		DZA65_RS13540	0.74	+0.5
2,908,550	+		DZA65_RS13540	0.89	-1.5
2,908,551	-		DZA65_RS13540	0.89	+0.7
2,908,551	-		DZA65_RS13540	0.89	+0.1
2,908,551	-		DZA65_RS13540	0.89	+0.3
2,908,843	-		DZA65_RS13545	0.12	-0.1
2,908,843	-		DZA65_RS13545	0.12	-0.5
2,908,992	+		DZA65_RS13545	0.30	-1.1
2,909,010	+		DZA65_RS13545	0.32	+1.2
2,909,011	-		DZA65_RS13545	0.32	+0.9
2,909,011	-		DZA65_RS13545	0.32	+0.2
2,909,038	+		DZA65_RS13545	0.36	+1.6
2,909,039	-		DZA65_RS13545	0.36	-0.0
2,909,039	-		DZA65_RS13545	0.36	+0.2
2,909,046	+		DZA65_RS13545	0.37	+0.9
2,909,046	+				+1.2
2,909,046	+		DZA65_RS13545	0.37	-0.9
2,909,047	-		DZA65_RS13545	0.37	+1.5
2,909,047	-		DZA65_RS13545	0.37	+1.3
2,909,047	-		DZA65_RS13545	0.37	+0.3
2,909,328	+		DZA65_RS13545	0.71	-0.1
2,909,328	+		DZA65_RS13545	0.71	+0.5
2,909,329	-		DZA65_RS13545	0.71	-1.4
2,909,329	-		DZA65_RS13545	0.71	-0.9
2,909,329	-		DZA65_RS13545	0.71	-0.3
2,909,329	-		DZA65_RS13545	0.71	+1.9
2,909,388	+		DZA65_RS13545	0.78	+0.3
2,909,388	+		DZA65_RS13545	0.78	+0.7
2,909,388	+		DZA65_RS13545	0.78	-1.5
2,909,389	-		DZA65_RS13545	0.79	+1.0
2,909,389	-		DZA65_RS13545	0.79	-0.2
2,909,389	-		DZA65_RS13545	0.79	+0.7
2,909,490	-				-0.9
2,909,535	+				-0.3
2,909,535	+				+1.1
2,909,563	+				-0.5
2,909,563	+				+1.5
2,909,563	+				+0.6
2,909,563	+				-1.2
2,909,563	+				-0.3
2,909,563	+				-1.1
2,909,563	+				-0.5
2,909,563	+				+0.5
2,909,563	+				-1.1
2,909,563	+				+0.8
2,909,564	-				+1.3
2,909,564	-				-0.2
2,909,564	-				+1.0
2,909,564	-				-0.1
2,909,564	-				-1.1
2,909,564	-				+0.9
2,909,564	-				+1.0
2,909,564	-				+0.2
2,909,564	-				-0.3
2,909,564	-				+0.5
2,909,564	-				+0.5
2,909,564	-				-0.3
2,909,564	-				+0.8
2,909,564	-				-0.2
2,909,564	-				+0.5
2,909,564	-				+0.1
2,909,564	-				+0.1
2,909,580	+				-0.8
2,909,580	+				+0.9
2,909,581	-				-0.1
2,909,581	-				+0.0
2,909,584	+				-0.6
2,909,592	+				-0.5
2,909,592	+				+1.1
2,909,592	+				-2.3
2,909,592	+				-2.7
2,909,592	+				+0.8
2,909,593	-				-0.3
2,909,593	-				-1.6
2,909,593	-				-0.1
2,909,593	-				-2.3
2,909,595	-				+1.2
2,909,604	-				-0.5
2,909,604	-				-0.8
2,909,604	-				-1.7
2,909,604	-				+0.5
2,909,656	-				-1.6
2,909,656	-				+0.7
2,909,656	-				+0.8
2,909,656	-				+0.1
2,909,656	-				+0.1
2,909,660	-				-0.3
2,909,660	-				+2.1
2,909,660	-				+0.2
2,909,660	-				-0.2
2,909,660	-				-0.7
2,909,706	+				+1.5
2,909,710	+				-0.4
2,909,715	+				+0.0
2,909,715	+				+0.5
2,909,715	+				-0.2
2,909,715	+				-0.8
2,909,715	+				+0.8
2,909,715	+				-2.1
2,909,715	+				+0.8
2,909,715	+				-0.1
2,909,715	+				-1.1
2,909,717	+				+2.1
2,909,717	+				-2.9
2,909,717	+				+0.0
2,909,717	+				+1.0
2,909,717	+				-0.1
2,909,717	+				-0.4
2,909,717	+				-2.9
2,909,717	+				+1.5
2,909,717	+				-0.2
2,909,717	+				-0.5
2,909,717	+				+0.2
2,909,717	+				+0.1
2,909,717	+				-1.5
2,909,717	+				-1.9
2,909,717	+				-0.3
2,909,717	+				+1.5
2,909,717	+				-1.5
2,909,717	+				+0.1
2,909,719	+				+0.9
2,909,719	+				+0.5
2,909,719	+				+0.1
2,909,719	+				-0.7
2,909,719	+				+0.5
2,909,719	+				+3.1
2,909,719	+				+2.1
2,909,719	+				+0.5
2,909,719	+				+0.5
2,909,719	+				-0.5
2,909,719	+				-0.5
2,909,719	+				-1.1
2,909,719	+				+1.1
2,909,719	+				-0.3
2,909,719	+				+1.9
2,909,719	+				-1.5
2,909,719	+				-0.0
2,909,719	+				-0.2
2,909,719	+				-1.2
2,909,719	+				+0.5
2,909,719	+				+1.3
2,909,719	+				+2.5
2,909,719	+				-0.0
2,909,719	+				+1.8
2,909,719	+				+1.3
2,909,720	-				+1.5
2,909,720	-				+0.1
2,909,720	-				+0.7
2,909,720	-				+0.1
2,909,720	-				+0.7
2,909,720	-				-0.2
2,909,720	-				+0.9
2,909,720	-				-1.1
2,909,720	-				-0.1
2,909,720	-				+0.4
2,909,720	-				-0.2
2,909,720	-				+1.0
2,909,720	-				+1.9
2,909,725	+				-1.1
2,909,725	+				+0.5
2,909,741	+				-0.0
2,909,741	+				+0.9
2,909,741	+				-2.1
2,909,742	-				-0.5
2,909,770	+				+1.2
2,909,771	-				-0.2
2,909,771	-				-0.3
2,909,884	-				-0.2
2,909,884	-				-0.1
2,909,884	-				-0.5
2,909,884	-				+0.8
2,909,908	+				-0.9
2,909,908	+				+0.1
2,909,908	+				-0.3
2,909,908	+				-0.3
2,909,910	+				+2.5
2,909,910	+				-0.0
2,909,910	+				-0.1
2,909,910	+				+0.6
2,909,910	+				+1.2
2,909,911	-				-0.5
2,909,911	-				+0.9
2,909,911	-				+1.7
2,909,911	-				-1.1
2,909,911	-				+1.1
2,909,911	-				+0.1
2,909,911	-				+3.4
2,909,911	-				-0.5
2,909,911	-				+0.1
2,909,911	-				+1.5
2,909,911	-				-2.3
2,909,911	-				+1.5
2,909,911	-				-1.0
2,909,911	-				+0.9
2,909,911	-				-0.3
2,909,916	-				-1.3
2,909,995	+				-0.5
2,909,995	+				+0.8
2,910,001	+				-0.5
2,910,002	-				+0.2
2,910,163	+		DZA65_RS13555	0.13	-0.4
2,910,164	-		DZA65_RS13555	0.13	-2.3
2,910,288	+		DZA65_RS13555	0.18	-0.4
2,910,315	+		DZA65_RS13555	0.19	+0.5
2,910,316	-		DZA65_RS13555	0.19	+3.8
2,910,316	-		DZA65_RS13555	0.19	-1.5
2,910,316	-		DZA65_RS13555	0.19	+0.5
2,910,481	+		DZA65_RS13555	0.26	+1.1
2,910,481	+		DZA65_RS13555	0.26	-0.0
2,910,481	+		DZA65_RS13555	0.26	-0.6
2,910,481	+		DZA65_RS13555	0.26	+1.1
2,910,481	+		DZA65_RS13555	0.26	-1.9
2,910,481	+		DZA65_RS13555	0.26	-2.2
2,910,481	+		DZA65_RS13555	0.26	-1.1
2,910,482	-		DZA65_RS13555	0.26	-0.7
2,910,482	-		DZA65_RS13555	0.26	+0.2
2,910,482	-		DZA65_RS13555	0.26	+2.2
2,910,482	-		DZA65_RS13555	0.26	+0.1
2,910,482	-		DZA65_RS13555	0.26	-2.2
2,910,482	-		DZA65_RS13555	0.26	+0.3
2,910,483	+		DZA65_RS13555	0.26	+0.8
2,910,483	+		DZA65_RS13555	0.26	+0.3
2,910,483	+		DZA65_RS13555	0.26	+1.8
2,910,483	+		DZA65_RS13555	0.26	+1.3
2,910,483	+		DZA65_RS13555	0.26	-0.3
2,910,483	+		DZA65_RS13555	0.26	-1.1
2,910,483	+		DZA65_RS13555	0.26	-0.0
2,910,484	-		DZA65_RS13555	0.26	+2.3
2,910,484	-		DZA65_RS13555	0.26	+0.2
2,910,484	-		DZA65_RS13555	0.26	+0.8
2,910,484	-		DZA65_RS13555	0.26	+0.5
2,910,484	-		DZA65_RS13555	0.26	-0.6
2,910,490	-		DZA65_RS13555	0.26	+0.5
2,910,490	-		DZA65_RS13555	0.26	+0.7
2,910,550	-		DZA65_RS13555	0.29	+1.5