Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13005

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,787,597	+				+0.4
2,787,640	+		DZA65_RS13000	0.36	+0.1
2,787,641	-		DZA65_RS13000	0.36	-1.1
2,787,656	+		DZA65_RS13000	0.37	+1.0
2,787,656	+		DZA65_RS13000	0.37	+0.8
2,787,656	+		DZA65_RS13000	0.37	+0.0
2,787,656	+		DZA65_RS13000	0.37	+0.3
2,787,657	-		DZA65_RS13000	0.37	+1.2
2,787,657	-		DZA65_RS13000	0.37	-0.2
2,787,657	-		DZA65_RS13000	0.37	+1.2
2,787,657	-		DZA65_RS13000	0.37	-1.6
2,787,768	-		DZA65_RS13000	0.50	-0.3
2,787,873	+		DZA65_RS13000	0.61	-0.3
2,787,873	+		DZA65_RS13000	0.61	-0.4
2,787,874	-		DZA65_RS13000	0.61	+0.1
2,787,874	-		DZA65_RS13000	0.61	-2.1
2,787,874	-		DZA65_RS13000	0.61	+0.4
2,787,919	+		DZA65_RS13000	0.66	-0.2
2,787,920	-		DZA65_RS13000	0.66	-1.1
2,788,126	-		DZA65_RS13000	0.89	+1.4
2,788,126	-		DZA65_RS13000	0.89	+1.2
2,788,323	-				+0.5
2,788,330	+				+1.6
2,788,330	+				-1.2
2,788,331	-				-0.6
2,788,331	-				-3.1
2,788,394	-				+1.2
2,788,427	+				-1.6
2,788,448	+				+0.8
2,788,448	+				-0.6
2,788,448	+				-0.4
2,788,448	+				+0.4
2,788,448	+				-1.8
2,788,448	+				-1.6
2,788,448	+				-1.1
2,788,448	+				-1.4
2,788,449	-				-3.1
2,788,449	-				-1.6
2,788,457	+				-0.4
2,788,457	+				+0.5
2,788,458	-				+0.4
2,788,458	-				-0.9
2,788,474	+				-1.6
2,788,474	+				-0.2
2,788,475	-				-1.0
2,788,475	-				+1.2
2,788,475	-				+0.4
2,788,475	-				-0.8
2,788,527	+				-0.8
2,788,527	+				-0.3
2,788,527	+				-0.3
2,788,527	+				-1.9
2,788,528	-				-0.0
2,788,528	-				-1.2
2,788,528	-				+1.1
2,788,528	-				-0.6
2,788,528	-				-1.2
2,788,574	+				-1.9
2,788,690	-				+0.8
2,788,711	-				-0.0
2,788,760	+				+0.4
2,788,760	+				+0.7
2,788,794	+		DZA65_RS13005	0.11	+1.0
2,788,794	+		DZA65_RS13005	0.11	+1.8
2,788,795	-		DZA65_RS13005	0.12	-3.1
2,788,795	-		DZA65_RS13005	0.12	-1.2
2,788,795	-		DZA65_RS13005	0.12	+0.1
2,788,795	-		DZA65_RS13005	0.12	-0.0
2,788,816	+		DZA65_RS13005	0.13	+1.1
2,788,816	+		DZA65_RS13005	0.13	-0.7
2,789,021	-		DZA65_RS13005	0.22	+0.7
2,789,021	-		DZA65_RS13005	0.22	-1.4
2,789,021	-				+1.6
2,789,021	-		DZA65_RS13005	0.22	-0.4
2,789,181	+		DZA65_RS13005	0.30	-0.2
2,789,182	-		DZA65_RS13005	0.30	-0.1
2,789,182	-		DZA65_RS13005	0.30	-0.4
2,789,182	-		DZA65_RS13005	0.30	-0.0
2,789,287	-		DZA65_RS13005	0.35	-0.3
2,789,287	-		DZA65_RS13005	0.35	+0.3
2,789,344	-		DZA65_RS13005	0.38	+1.4
2,789,344	-		DZA65_RS13005	0.38	+0.4
2,789,372	-		DZA65_RS13005	0.39	-0.6
2,789,397	+		DZA65_RS13005	0.41	+0.7
2,789,397	+		DZA65_RS13005	0.41	-2.2
2,789,402	-		DZA65_RS13005	0.41	+0.1
2,789,402	-		DZA65_RS13005	0.41	-0.1
2,789,643	-		DZA65_RS13005	0.53	-0.6
2,789,643	-		DZA65_RS13005	0.53	-1.5
2,789,767	+		DZA65_RS13005	0.59	-0.2
2,789,768	-		DZA65_RS13005	0.59	+0.4
2,789,909	+		DZA65_RS13005	0.65	-1.2
2,789,909	+		DZA65_RS13005	0.65	-0.0
2,789,909	+		DZA65_RS13005	0.65	-1.2
2,789,910	-		DZA65_RS13005	0.65	-2.8
2,789,910	-		DZA65_RS13005	0.65	-0.6
2,789,910	-		DZA65_RS13005	0.65	-1.4
2,789,955	+		DZA65_RS13005	0.68	-2.2
2,790,044	-		DZA65_RS13005	0.72	-0.8
2,790,142	-		DZA65_RS13005	0.77	-2.2
2,790,254	+		DZA65_RS13005	0.82	+0.7
2,790,255	-		DZA65_RS13005	0.82	+0.8
2,790,273	+		DZA65_RS13005	0.83	-0.0
2,790,273	+		DZA65_RS13005	0.83	+0.2
2,790,289	+		DZA65_RS13005	0.84	-0.1
2,790,476	+				-0.7
2,790,649	+				+1.2
2,790,649	+				-0.1
2,790,651	+				-0.1
2,790,651	+				-2.2
2,790,651	+				-0.6
2,790,651	+				+0.3
2,790,651	+				-1.2
2,790,651	+				-0.6
2,790,651	+				-1.2
2,790,651	+				-2.2
2,790,651	+				-0.1
2,790,652	-				+0.8
2,790,652	-				+0.4
2,790,652	-				+0.8
2,790,652	-				-1.4
2,790,652	-				-0.4
2,790,652	-				-0.9
2,790,652	-				-0.9
2,790,731	+				-1.2
2,790,732	-				+0.6
2,790,732	-				+0.4
2,790,732	-				-0.1
2,790,751	+				+0.6
2,790,752	-				-0.1
2,790,752	-				+0.4
2,790,976	+		DZA65_RS13010	0.25	-0.8
2,791,022	-		DZA65_RS13010	0.30	+0.3
2,791,049	+		DZA65_RS13010	0.32	-0.9
2,791,049	+		DZA65_RS13010	0.32	+0.3
2,791,049	+		DZA65_RS13010	0.32	-0.8
2,791,049	+		DZA65_RS13010	0.32	+0.9
2,791,049	+		DZA65_RS13010	0.32	+0.6
2,791,049	+		DZA65_RS13010	0.32	-2.9
2,791,049	+		DZA65_RS13010	0.32	+0.9
2,791,049	+		DZA65_RS13010	0.32	-0.6
2,791,050	-		DZA65_RS13010	0.32	-0.8
2,791,050	-		DZA65_RS13010	0.32	-0.2
2,791,050	-		DZA65_RS13010	0.32	-0.0
2,791,050	-		DZA65_RS13010	0.32	+0.1
2,791,050	-		DZA65_RS13010	0.32	-0.1
2,791,050	-		DZA65_RS13010	0.32	-0.8
2,791,050	-		DZA65_RS13010	0.32	-0.5
2,791,050	-		DZA65_RS13010	0.32	+0.4
2,791,050	-		DZA65_RS13010	0.32	+1.6
2,791,050	-		DZA65_RS13010	0.32	+1.2
2,791,050	-		DZA65_RS13010	0.32	-0.0
2,791,099	+		DZA65_RS13010	0.37	-0.4
2,791,099	+		DZA65_RS13010	0.37	+0.8
2,791,100	-		DZA65_RS13010	0.37	-1.0
2,791,187	+		DZA65_RS13010	0.46	-2.1
2,791,188	-		DZA65_RS13010	0.46	-1.1
2,791,226	+		DZA65_RS13010	0.50	-0.0
2,791,226	+		DZA65_RS13010	0.50	+0.3
2,791,226	+		DZA65_RS13010	0.50	+0.8
2,791,226	+		DZA65_RS13010	0.50	-0.2
2,791,226	+		DZA65_RS13010	0.50	+0.9
2,791,226	+		DZA65_RS13010	0.50	+1.4
2,791,226	+		DZA65_RS13010	0.50	+0.8
2,791,227	-		DZA65_RS13010	0.50	+0.7
2,791,227	-		DZA65_RS13010	0.50	-1.3
2,791,227	-		DZA65_RS13010	0.50	+0.1
2,791,227	-		DZA65_RS13010	0.50	-0.3
2,791,227	-		DZA65_RS13010	0.50	+1.4
2,791,227	-		DZA65_RS13010	0.50	-0.5
2,791,227	-		DZA65_RS13010	0.50	-1.1
2,791,227	-		DZA65_RS13010	0.50	-0.5
2,791,227	-		DZA65_RS13010	0.50	+0.9
2,791,227	-		DZA65_RS13010	0.50	-1.9
2,791,339	-		DZA65_RS13010	0.61	-0.6
2,791,359	+		DZA65_RS13010	0.63	+0.1
2,791,359	+		DZA65_RS13010	0.63	-2.8
2,791,359	+		DZA65_RS13010	0.63	-0.4
2,791,359	+		DZA65_RS13010	0.63	-0.3
2,791,360	-		DZA65_RS13010	0.63	+1.7
2,791,360	-		DZA65_RS13010	0.63	+0.9
2,791,360	-		DZA65_RS13010	0.63	-1.9
2,791,453	+		DZA65_RS13010	0.72	+0.1
2,791,454	-		DZA65_RS13010	0.72	+0.2
2,791,519	+		DZA65_RS13010	0.79	-1.0
2,791,519	+		DZA65_RS13010	0.79	-0.1
2,791,520	-		DZA65_RS13010	0.79	+2.0
2,791,564	+		DZA65_RS13010	0.83	-1.6
2,791,565	-		DZA65_RS13010	0.83	-1.9