Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12920

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,769,847	-		DZA65_RS12915	0.64	-0.3
2,769,996	+		DZA65_RS12915	0.74	-1.0
2,770,133	+		DZA65_RS12915	0.83	-0.0
2,770,133	+		DZA65_RS12915	0.83	+1.4
2,770,134	-		DZA65_RS12915	0.83	+0.3
2,770,134	-		DZA65_RS12915	0.83	+2.5
2,770,134	-		DZA65_RS12915	0.83	+0.7
2,770,134	-		DZA65_RS12915	0.83	-0.5
2,770,171	-		DZA65_RS12915	0.85	-0.5
2,770,173	+		DZA65_RS12915	0.85	-1.2
2,770,173	+		DZA65_RS12915	0.85	-0.6
2,770,173	+		DZA65_RS12915	0.85	-1.2
2,770,173	+		DZA65_RS12915	0.85	-2.9
2,770,174	-		DZA65_RS12915	0.85	+0.7
2,770,174	-		DZA65_RS12915	0.85	+0.1
2,770,174	-		DZA65_RS12915	0.85	-2.8
2,770,174	-		DZA65_RS12915	0.85	+0.7
2,770,174	-		DZA65_RS12915	0.85	+1.1
2,770,174	-		DZA65_RS12915	0.85	-0.5
2,770,272	-				-1.8
2,770,272	-				+0.5
2,770,387	-				-1.9
2,770,404	+				-1.0
2,770,404	+				-3.2
2,770,404	+				-0.9
2,770,404	+				+2.0
2,770,404	+				-2.2
2,770,404	+				-0.5
2,770,404	+				+0.8
2,770,404	+				-0.3
2,770,404	+				-0.6
2,770,404	+				-0.3
2,770,404	+				-0.3
2,770,404	+				-1.6
2,770,404	+				+0.3
2,770,404	+				+0.0
2,770,404	+				-0.6
2,770,405	-				+0.1
2,770,405	-				-1.6
2,770,405	-				+1.3
2,770,405	-				+0.7
2,770,405	-				+1.1
2,770,405	-				+0.2
2,770,405	-				-0.0
2,770,405	-				-0.1
2,770,405	-				+0.5
2,770,405	-				-0.9
2,770,405	-				-2.2
2,770,405	-				+1.5
2,770,405	-				+0.9
2,770,405	-				-0.2
2,770,405	-				-1.4
2,770,408	+				+0.4
2,770,408	+				-0.6
2,770,409	-				+1.5
2,770,409	-				-0.5
2,770,409	-				+0.9
2,770,409	-				-0.1
2,770,409	-				-1.4
2,770,508	+				-0.4
2,770,509	-				+0.8
2,770,517	+				+0.9
2,770,521	+				-0.8
2,770,521	+				+1.7
2,770,521	+				+0.4
2,770,526	-				+0.1
2,770,530	-				-0.5
2,770,534	+				-0.6
2,770,535	-				+0.8
2,770,547	+				+0.4
2,770,551	+				+0.6
2,770,598	-				+1.1
2,770,598	-				+1.4
2,770,598	-				-0.7
2,770,606	+				-1.5
2,770,606	+				+0.1
2,770,606	+				-0.4
2,770,606	+				+0.9
2,770,606	+				+1.5
2,770,606	+				+0.4
2,770,607	-				+0.9
2,770,607	-				-0.6
2,770,607	-				+1.4
2,770,607	-				+0.7
2,770,607	-				-1.4
2,770,607	-				+0.2
2,770,608	+				+0.4
2,770,608	+				-0.2
2,770,608	+				-2.8
2,770,608	+				+0.4
2,770,608	+				-0.1
2,770,608	+				-0.2
2,770,608	+				-1.9
2,770,608	+				-1.3
2,770,608	+				-0.0
2,770,609	-				-0.4
2,770,609	-				-1.2
2,770,609	-				+0.6
2,770,609	-				-0.2
2,770,609	-				+0.2
2,770,609	-				+1.1
2,770,609	-				+0.2
2,770,609	-				-1.2
2,770,612	+				-1.6
2,770,612	+				+0.1
2,770,612	+				+1.1
2,770,613	-				-0.0
2,770,613	-				+1.0
2,770,613	-				-0.5
2,770,613	-				-2.2
2,770,643	+				-1.2
2,770,643	+				-1.8
2,770,644	-				-1.4
2,770,644	-				-1.6
2,770,644	-				+0.9
2,770,644	-				-2.2
2,770,644	-				-1.2
2,770,644	-				+1.4
2,770,645	+				-1.6
2,770,646	-				-1.1
2,770,675	-				+0.5
2,770,688	+				-1.6
2,770,688	+				+0.2
2,770,689	-				-0.6
2,770,689	-				+1.8
2,770,689	-				+0.4
2,770,742	-				-3.1
2,770,742	-				+0.7
2,770,742	-				+1.2
2,770,742	-				-2.9
2,770,742	-				-1.6
2,770,820	-				-0.8
2,770,846	-				+1.6
2,770,846	-				+0.1
2,770,908	+		DZA65_RS12920	0.13	+0.0
2,770,943	-		DZA65_RS12920	0.15	+0.7
2,770,962	+		DZA65_RS12920	0.17	+0.9
2,770,971	+		DZA65_RS12920	0.17	-0.2
2,770,972	-		DZA65_RS12920	0.18	-1.0
2,770,972	-		DZA65_RS12920	0.18	+1.3
2,770,972	-		DZA65_RS12920	0.18	-1.0
2,770,972	-		DZA65_RS12920	0.18	+1.0
2,770,972	-		DZA65_RS12920	0.18	+1.4
2,770,972	-		DZA65_RS12920	0.18	+0.7
2,770,998	+		DZA65_RS12920	0.19	+1.3
2,770,998	+		DZA65_RS12920	0.19	-1.2
2,770,998	+		DZA65_RS12920	0.19	+0.5
2,770,998	+		DZA65_RS12920	0.19	-2.6
2,770,999	-		DZA65_RS12920	0.20	-0.3
2,770,999	-		DZA65_RS12920	0.20	-1.2
2,771,124	+		DZA65_RS12920	0.29	-0.6
2,771,135	+		DZA65_RS12920	0.30	-0.2
2,771,135	+		DZA65_RS12920	0.30	-0.0
2,771,136	-		DZA65_RS12920	0.30	+0.1
2,771,136	-		DZA65_RS12920	0.30	+0.2
2,771,139	-		DZA65_RS12920	0.30	+0.6
2,771,178	+		DZA65_RS12920	0.33	+0.1
2,771,179	-		DZA65_RS12920	0.33	+0.8
2,771,269	+		DZA65_RS12920	0.40	+1.3
2,771,269	+		DZA65_RS12920	0.40	-0.3
2,771,269	+		DZA65_RS12920	0.40	+2.6
2,771,270	-		DZA65_RS12920	0.40	+0.8
2,771,270	-		DZA65_RS12920	0.40	+0.3
2,771,270	-		DZA65_RS12920	0.40	-0.9
2,771,321	-		DZA65_RS12920	0.43	-0.4
2,771,350	+		DZA65_RS12920	0.46	+1.2
2,771,350	+		DZA65_RS12920	0.46	+0.5
2,771,350	+		DZA65_RS12920	0.46	+0.9
2,771,350	+		DZA65_RS12920	0.46	-0.3
2,771,351	-		DZA65_RS12920	0.46	+1.5
2,771,351	-		DZA65_RS12920	0.46	-1.2
2,771,351	-		DZA65_RS12920	0.46	-1.1
2,771,532	+		DZA65_RS12920	0.59	+1.2
2,771,533	-		DZA65_RS12920	0.59	+0.6
2,771,533	-		DZA65_RS12920	0.59	-0.1
2,771,533	-		DZA65_RS12920	0.59	+0.4
2,771,676	+		DZA65_RS12920	0.70	+0.1
2,771,676	+		DZA65_RS12920	0.70	+1.3
2,771,676	+		DZA65_RS12920	0.70	+0.9
2,771,676	+		DZA65_RS12920	0.70	-0.6
2,771,676	+		DZA65_RS12920	0.70	+1.0
2,771,676	+		DZA65_RS12920	0.70	+1.1
2,771,676	+		DZA65_RS12920	0.70	-1.4
2,771,676	+		DZA65_RS12920	0.70	-2.2
2,771,676	+		DZA65_RS12920	0.70	+0.1
2,771,676	+		DZA65_RS12920	0.70	-1.0
2,771,677	-		DZA65_RS12920	0.70	+0.4
2,771,677	-		DZA65_RS12920	0.70	-0.0
2,771,677	-		DZA65_RS12920	0.70	-0.8
2,771,677	-		DZA65_RS12920	0.70	-0.9
2,771,680	+		DZA65_RS12920	0.70	+0.4
2,771,681	-		DZA65_RS12920	0.70	-0.0
2,771,700	-		DZA65_RS12920	0.72	+0.9
2,771,700	-		DZA65_RS12920	0.72	+1.1
2,771,787	+		DZA65_RS12920	0.78	+0.5
2,771,973	+				+1.1
2,771,973	+				-0.9
2,771,973	+				+1.6
2,771,973	+				-0.6
2,771,973	+				-1.8
2,771,974	-				+1.2
2,771,974	-				-0.2
2,771,974	-				-0.6
2,771,995	-				-0.6
2,772,028	+				-1.4
2,772,028	+				-0.4
2,772,028	+				+0.9
2,772,029	-				+0.3
2,772,029	-				+0.1
2,772,029	-				+1.4
2,772,029	-				+0.5
2,772,029	-				-0.7
2,772,029	-				-1.4
2,772,029	-				-2.2
2,772,032	-				-1.4
2,772,032	-				-1.9
2,772,032	-				+1.4
2,772,032	-				+0.7
2,772,032	-				+1.1
2,772,032	-				-0.1
2,772,115	-				-0.2
2,772,115	-				-1.1
2,772,128	-				-1.2
2,772,146	-				+0.1
2,772,154	+				+0.4
2,772,154	+				+0.8
2,772,154	+				+0.4
2,772,154	+				+0.1
2,772,154	+				-0.2
2,772,154	+				+0.5
2,772,155	-				-0.5
2,772,155	-				+0.6
2,772,191	+				+0.4
2,772,233	+				-0.2
2,772,237	-				-0.2
2,772,252	+				-2.6
2,772,252	+				-0.5
2,772,252	+				-1.2
2,772,252	+				+0.4
2,772,253	-				+0.4
2,772,284	+				-0.3
2,772,284	+				-0.2
2,772,287	+				-0.0
2,772,287	+				+0.8
2,772,288	-				+0.6
2,772,363	+				+0.2
2,772,364	-				+0.7
2,772,371	+				-1.8
2,772,375	+				+0.6
2,772,375	+				-0.3
2,772,376	-				+0.7
2,772,376	-				-1.2
2,772,380	+				-0.6
2,772,380	+				-1.3
2,772,380	+				+0.2
2,772,381	-				-0.6
2,772,381	-				-0.5
2,772,381	-				+0.4
2,772,387	+				-0.2
2,772,387	+				+0.5
2,772,387	+				+0.1
2,772,388	-				-0.5
2,772,388	-				+2.4
2,772,388	-				-0.5
2,772,401	+				-0.6
2,772,401	+				+0.0
2,772,401	+				+0.4
2,772,401	+				-0.8
2,772,402	-				+3.0
2,772,420	+				-0.6
2,772,421	-				+0.3
2,772,421	-				+0.0
2,772,421	-				+0.8
2,772,542	-		DZA65_RS12925	0.12	-1.3
2,772,714	+		DZA65_RS12925	0.28	-1.4
2,772,714	+		DZA65_RS12925	0.28	+0.8
2,772,714	+		DZA65_RS12925	0.28	-2.2
2,772,732	+		DZA65_RS12925	0.30	+0.2
2,772,732	+		DZA65_RS12925	0.30	-0.0
2,772,733	-		DZA65_RS12925	0.30	-0.6
2,772,733	-		DZA65_RS12925	0.30	+0.5
2,772,733	-		DZA65_RS12925	0.30	-0.4
2,772,733	-		DZA65_RS12925	0.30	-1.6
2,772,745	+		DZA65_RS12925	0.31	+1.2
2,772,745	+		DZA65_RS12925	0.31	-2.1
2,772,746	-		DZA65_RS12925	0.31	+0.1
2,772,746	-		DZA65_RS12925	0.31	-0.3
2,772,761	+		DZA65_RS12925	0.32	-2.6
2,772,761	+		DZA65_RS12925	0.32	-0.6
2,772,761	+		DZA65_RS12925	0.32	-0.8
2,772,766	+		DZA65_RS12925	0.33	-1.4
2,772,767	-		DZA65_RS12925	0.33	-0.9
2,772,897	+		DZA65_RS12925	0.45	+0.4
2,772,897	+				+1.6
2,772,897	+		DZA65_RS12925	0.45	+0.2
2,772,898	-		DZA65_RS12925	0.45	-1.6
2,772,898	-		DZA65_RS12925	0.45	+0.4
2,772,898	-		DZA65_RS12925	0.45	-1.5
2,772,898	-		DZA65_RS12925	0.45	-1.6
2,772,899	+		DZA65_RS12925	0.45	-0.3
2,772,900	-		DZA65_RS12925	0.46	-3.2
2,773,044	-		DZA65_RS12925	0.59	-0.4