Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12865

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,755,546	+		DZA65_RS12860	0.18	-1.2
2,755,546	+		DZA65_RS12860	0.18	-0.4
2,755,547	-		DZA65_RS12860	0.18	-1.2
2,755,547	-		DZA65_RS12860	0.18	+0.4
2,755,547	-		DZA65_RS12860	0.18	-0.2
2,755,547	-		DZA65_RS12860	0.18	+0.7
2,755,550	+		DZA65_RS12860	0.19	+2.4
2,755,550	+		DZA65_RS12860	0.19	-1.6
2,755,551	-		DZA65_RS12860	0.19	-1.8
2,755,551	-		DZA65_RS12860	0.19	+0.4
2,755,551	-		DZA65_RS12860	0.19	+0.6
2,755,670	+		DZA65_RS12860	0.31	+0.3
2,755,750	+		DZA65_RS12860	0.39	+0.1
2,755,750	+		DZA65_RS12860	0.39	-0.7
2,755,751	-		DZA65_RS12860	0.39	-2.9
2,755,842	-		DZA65_RS12860	0.48	-1.4
2,755,842	-		DZA65_RS12860	0.48	+1.1
2,755,854	+		DZA65_RS12860	0.50	+0.1
2,755,854	+		DZA65_RS12860	0.50	-1.4
2,755,854	+		DZA65_RS12860	0.50	-1.6
2,755,855	-		DZA65_RS12860	0.50	+1.3
2,755,855	-		DZA65_RS12860	0.50	-1.2
2,755,855	-		DZA65_RS12860	0.50	+0.8
2,755,902	-		DZA65_RS12860	0.54	+0.6
2,755,902	-		DZA65_RS12860	0.54	+0.9
2,755,977	+		DZA65_RS12860	0.62	-1.8
2,755,977	+		DZA65_RS12860	0.62	-0.6
2,755,982	+		DZA65_RS12860	0.63	-1.1
2,756,018	+		DZA65_RS12860	0.66	+1.1
2,756,018	+		DZA65_RS12860	0.66	+0.6
2,756,019	-		DZA65_RS12860	0.66	+2.3
2,756,064	-		DZA65_RS12860	0.71	+0.7
2,756,064	-		DZA65_RS12860	0.71	-1.2
2,756,064	-		DZA65_RS12860	0.71	-0.6
2,756,065	+		DZA65_RS12860	0.71	-0.9
2,756,065	+		DZA65_RS12860	0.71	-0.0
2,756,065	+		DZA65_RS12860	0.71	+0.0
2,756,065	+		DZA65_RS12860	0.71	-0.9
2,756,065	+		DZA65_RS12860	0.71	+0.4
2,756,065	+		DZA65_RS12860	0.71	+0.6
2,756,065	+				+0.4
2,756,065	+		DZA65_RS12860	0.71	+2.0
2,756,065	+		DZA65_RS12860	0.71	-1.9
2,756,065	+		DZA65_RS12860	0.71	-0.3
2,756,065	+		DZA65_RS12860	0.71	+0.4
2,756,066	-		DZA65_RS12860	0.71	-1.9
2,756,066	-		DZA65_RS12860	0.71	-0.2
2,756,066	-		DZA65_RS12860	0.71	-0.8
2,756,066	-		DZA65_RS12860	0.71	-0.6
2,756,066	-		DZA65_RS12860	0.71	+0.4
2,756,066	-		DZA65_RS12860	0.71	-0.4
2,756,066	-		DZA65_RS12860	0.71	+0.4
2,756,066	-		DZA65_RS12860	0.71	+0.5
2,756,066	-		DZA65_RS12860	0.71	+0.7
2,756,066	-		DZA65_RS12860	0.71	+1.6
2,756,066	-		DZA65_RS12860	0.71	-0.9
2,756,066	-		DZA65_RS12860	0.71	+1.6
2,756,066	-		DZA65_RS12860	0.71	-0.8
2,756,066	-		DZA65_RS12860	0.71	-0.5
2,756,109	+		DZA65_RS12860	0.75	+1.8
2,756,110	-		DZA65_RS12860	0.75	-1.0
2,756,110	-		DZA65_RS12860	0.75	+0.1
2,756,151	+		DZA65_RS12860	0.80	+0.6
2,756,151	+		DZA65_RS12860	0.80	-2.8
2,756,151	+		DZA65_RS12860	0.80	+0.4
2,756,151	+		DZA65_RS12860	0.80	-1.7
2,756,151	+		DZA65_RS12860	0.80	+1.0
2,756,151	+		DZA65_RS12860	0.80	+2.4
2,756,151	+		DZA65_RS12860	0.80	+0.4
2,756,151	+		DZA65_RS12860	0.80	+0.4
2,756,152	-		DZA65_RS12860	0.80	+1.3
2,756,152	-		DZA65_RS12860	0.80	-1.3
2,756,152	-		DZA65_RS12860	0.80	-0.3
2,756,152	-		DZA65_RS12860	0.80	-0.6
2,756,152	-		DZA65_RS12860	0.80	-0.5
2,756,152	-		DZA65_RS12860	0.80	-0.0
2,756,152	-		DZA65_RS12860	0.80	+0.6
2,756,152	-		DZA65_RS12860	0.80	-2.6
2,756,262	+				+0.9
2,756,263	-				+0.8
2,756,303	+				-1.9
2,756,303	+				+0.1
2,756,328	-				+0.1
2,756,333	+				-0.4
2,756,333	+				+0.9
2,756,334	-				+0.1
2,756,387	-				-0.4
2,756,466	+				+0.1
2,756,466	+				-0.1
2,756,466	+				-0.6
2,756,467	-				+0.1
2,756,467	-				-0.3
2,756,467	-				-1.9
2,756,467	-				+1.0
2,756,540	+				-1.6
2,756,541	-				-1.0
2,756,541	-				-0.5
2,756,541	-				+0.4
2,756,541	-				+1.0
2,756,545	+				+0.6
2,756,546	-				+0.1
2,756,547	+				+2.4
2,756,548	-				-1.3
2,756,562	+				+0.1
2,756,611	+				-0.8
2,756,612	-				-3.1
2,756,612	-				+0.8
2,756,612	-				-0.0
2,756,612	-				+0.2
2,756,631	+				+0.8
2,756,631	+				+0.7
2,756,631	+				-1.6
2,756,631	+				+0.2
2,756,632	-				-1.8
2,756,632	-				-0.2
2,756,632	-				+0.4
2,756,632	-				-0.3
2,756,632	-				+0.2
2,756,637	+				-0.0
2,756,637	+				-0.4
2,756,637	+				-0.1
2,756,638	-				+0.2
2,756,688	+				-1.1
2,756,689	-				-1.2
2,756,689	-				-0.3
2,756,689	-				-1.2
2,756,689	-				-0.1
2,756,749	-		DZA65_RS12865	0.13	+0.1
2,756,749	-		DZA65_RS12865	0.13	-0.4
2,756,762	-				-0.9
2,756,762	-		DZA65_RS12865	0.14	+1.5
2,756,826	+		DZA65_RS12865	0.18	-0.9
2,756,827	-				+1.7
2,756,850	-		DZA65_RS12865	0.20	+0.4
2,756,850	-		DZA65_RS12865	0.20	+0.1
2,756,850	-		DZA65_RS12865	0.20	+2.4
2,756,850	-		DZA65_RS12865	0.20	+0.5
2,756,886	+		DZA65_RS12865	0.22	-2.2
2,756,886	+		DZA65_RS12865	0.22	-0.2
2,756,886	+		DZA65_RS12865	0.22	-0.2
2,756,921	+		DZA65_RS12865	0.24	+1.0
2,756,922	-		DZA65_RS12865	0.24	+3.4
2,756,991	+		DZA65_RS12865	0.28	+0.4
2,756,991	+		DZA65_RS12865	0.28	+1.0
2,756,991	+		DZA65_RS12865	0.28	-0.0
2,756,991	+		DZA65_RS12865	0.28	+0.5
2,756,992	-		DZA65_RS12865	0.28	-0.5
2,756,992	-		DZA65_RS12865	0.28	-0.1
2,756,992	-		DZA65_RS12865	0.28	-0.5
2,756,992	-		DZA65_RS12865	0.28	-1.8
2,756,992	-		DZA65_RS12865	0.28	+0.7
2,756,992	-		DZA65_RS12865	0.28	-0.1
2,756,992	-		DZA65_RS12865	0.28	+0.7
2,757,045	-		DZA65_RS12865	0.31	+1.7
2,757,081	+		DZA65_RS12865	0.34	-1.6
2,757,082	-		DZA65_RS12865	0.34	-0.4
2,757,082	-		DZA65_RS12865	0.34	-1.7
2,757,187	+		DZA65_RS12865	0.40	-0.6
2,757,201	+		DZA65_RS12865	0.41	-0.9
2,757,202	-		DZA65_RS12865	0.41	-1.2
2,757,202	-		DZA65_RS12865	0.41	+0.6
2,757,202	-		DZA65_RS12865	0.41	-1.2
2,757,261	+		DZA65_RS12865	0.45	+1.2
2,757,261	+		DZA65_RS12865	0.45	-2.6
2,757,261	+		DZA65_RS12865	0.45	+0.3
2,757,261	+		DZA65_RS12865	0.45	-2.2
2,757,261	+		DZA65_RS12865	0.45	-0.4
2,757,261	+		DZA65_RS12865	0.45	-1.2
2,757,261	+		DZA65_RS12865	0.45	-0.1
2,757,261	+		DZA65_RS12865	0.45	-0.9
2,757,262	-		DZA65_RS12865	0.45	-0.2
2,757,262	-		DZA65_RS12865	0.45	-2.8
2,757,262	-		DZA65_RS12865	0.45	-1.9
2,757,262	-		DZA65_RS12865	0.45	-0.1
2,757,262	-		DZA65_RS12865	0.45	+0.2
2,757,262	-		DZA65_RS12865	0.45	-1.2
2,757,262	-		DZA65_RS12865	0.45	+0.8
2,757,264	+		DZA65_RS12865	0.45	+0.4
2,757,264	+		DZA65_RS12865	0.45	+0.1
2,757,264	+		DZA65_RS12865	0.45	+0.2
2,757,264	+		DZA65_RS12865	0.45	-0.6
2,757,264	+		DZA65_RS12865	0.45	-0.4
2,757,264	+		DZA65_RS12865	0.45	+1.4
2,757,264	+		DZA65_RS12865	0.45	+0.7
2,757,265	-		DZA65_RS12865	0.45	-1.6
2,757,265	-		DZA65_RS12865	0.45	+0.8
2,757,265	-		DZA65_RS12865	0.45	-0.1
2,757,265	-		DZA65_RS12865	0.45	+0.7
2,757,265	-		DZA65_RS12865	0.45	-0.9
2,757,265	-		DZA65_RS12865	0.45	-1.1
2,757,265	-		DZA65_RS12865	0.45	+0.1
2,757,265	-		DZA65_RS12865	0.45	-0.3
2,757,265	-		DZA65_RS12865	0.45	+0.2
2,757,265	-		DZA65_RS12865	0.45	-0.3
2,757,267	+		DZA65_RS12865	0.45	-0.1
2,757,267	+		DZA65_RS12865	0.45	-0.2
2,757,267	+		DZA65_RS12865	0.45	-1.8
2,757,267	+		DZA65_RS12865	0.45	+1.4
2,757,267	+		DZA65_RS12865	0.45	-0.5
2,757,267	+		DZA65_RS12865	0.45	+0.1
2,757,267	+		DZA65_RS12865	0.45	-0.5
2,757,267	+		DZA65_RS12865	0.45	-0.9
2,757,267	+		DZA65_RS12865	0.45	-1.2
2,757,267	+		DZA65_RS12865	0.45	+0.6
2,757,267	+		DZA65_RS12865	0.45	+1.1
2,757,267	+		DZA65_RS12865	0.45	+1.1
2,757,267	+		DZA65_RS12865	0.45	-0.6
2,757,267	+		DZA65_RS12865	0.45	-0.6
2,757,268	-		DZA65_RS12865	0.45	+1.1
2,757,268	-		DZA65_RS12865	0.45	+1.0
2,757,268	-		DZA65_RS12865	0.45	+0.4
2,757,268	-		DZA65_RS12865	0.45	-1.5
2,757,268	-		DZA65_RS12865	0.45	+0.4
2,757,268	-		DZA65_RS12865	0.45	-1.2
2,757,268	-		DZA65_RS12865	0.45	+1.1
2,757,268	-		DZA65_RS12865	0.45	+0.5
2,757,453	+		DZA65_RS12865	0.56	-0.2
2,757,622	-		DZA65_RS12865	0.67	+1.7
2,757,622	-		DZA65_RS12865	0.67	+0.2
2,757,622	-		DZA65_RS12865	0.67	+1.1
2,757,622	-		DZA65_RS12865	0.67	+0.7
2,757,767	-		DZA65_RS12865	0.76	+0.9
2,757,798	+		DZA65_RS12865	0.78	+1.6
2,757,798	+		DZA65_RS12865	0.78	-0.9
2,757,798	+		DZA65_RS12865	0.78	+0.2
2,757,798	+		DZA65_RS12865	0.78	+0.4
2,757,799	-		DZA65_RS12865	0.78	-0.2
2,757,799	-		DZA65_RS12865	0.78	+0.6
2,757,865	+		DZA65_RS12865	0.82	+2.1
2,757,865	+		DZA65_RS12865	0.82	+1.3
2,757,883	+		DZA65_RS12865	0.83	-0.9
2,757,965	-		DZA65_RS12865	0.88	+0.8
2,757,995	-		DZA65_RS12865	0.90	+2.1
2,757,995	-		DZA65_RS12865	0.90	+2.2
2,758,110	-				-1.2
2,758,173	+				+0.7
2,758,173	+				-0.6
2,758,174	-				+1.7
2,758,177	+				+0.3
2,758,177	+				-1.2
2,758,177	+				-0.9
2,758,177	+				-0.9
2,758,178	-				-0.6
2,758,308	+				+0.6
2,758,309	-				-0.2
2,758,310	+				-0.9
2,758,310	+				-1.2
2,758,311	-				-0.7
2,758,311	-				-0.1
2,758,369	+				+0.0
2,758,369	+				+0.1
2,758,370	-				+0.4
2,758,370	-				-0.0
2,758,370	-				-0.2
2,758,403	+				-1.0
2,758,404	-				-1.4
2,758,408	+				-0.1
2,758,408	+				-0.4
2,758,408	+				-1.8
2,758,408	+				+0.5
2,758,409	-				+2.4
2,758,531	+				-1.1
2,758,531	+				-1.6
2,758,532	-				-2.3
2,758,619	+				-0.4
2,758,620	-				-1.9
2,758,753	+		DZA65_RS12870	0.28	-0.4
2,758,753	+		DZA65_RS12870	0.28	-0.9
2,758,753	+		DZA65_RS12870	0.28	+0.4
2,758,753	+		DZA65_RS12870	0.28	-0.5
2,758,754	-		DZA65_RS12870	0.28	+0.4
2,758,754	-		DZA65_RS12870	0.28	-1.6
2,758,754	-		DZA65_RS12870	0.28	-0.2
2,758,754	-		DZA65_RS12870	0.28	+1.7
2,758,754	-		DZA65_RS12870	0.28	-2.6
2,758,754	-		DZA65_RS12870	0.28	+1.9
2,758,858	+		DZA65_RS12870	0.42	+0.2
2,758,859	-		DZA65_RS12870	0.42	-0.8
2,758,916	-		DZA65_RS12870	0.50	-0.6