Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12625

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,703,259	-		DZA65_RS12620	0.30	+1.6
2,703,259	-		DZA65_RS12620	0.30	-1.2
2,703,259	-		DZA65_RS12620	0.30	-0.6
2,703,266	+		DZA65_RS12620	0.30	-0.7
2,703,620	-		DZA65_RS12620	0.57	+0.1
2,703,652	+		DZA65_RS12620	0.59	+0.9
2,703,653	-		DZA65_RS12620	0.59	+1.4
2,703,653	-		DZA65_RS12620	0.59	-1.2
2,703,676	+		DZA65_RS12620	0.61	+1.1
2,703,676	+		DZA65_RS12620	0.61	-1.5
2,703,676	+		DZA65_RS12620	0.61	+1.0
2,703,676	+		DZA65_RS12620	0.61	-2.2
2,703,676	+		DZA65_RS12620	0.61	-1.9
2,703,676	+		DZA65_RS12620	0.61	-0.1
2,703,676	+		DZA65_RS12620	0.61	+0.1
2,703,676	+		DZA65_RS12620	0.61	-0.2
2,703,676	+		DZA65_RS12620	0.61	-0.2
2,703,677	-		DZA65_RS12620	0.61	+0.2
2,703,677	-		DZA65_RS12620	0.61	-0.1
2,703,677	-		DZA65_RS12620	0.61	+0.5
2,703,677	-		DZA65_RS12620	0.61	+1.5
2,703,744	+		DZA65_RS12620	0.66	+1.9
2,703,745	-		DZA65_RS12620	0.66	-0.6
2,703,745	-		DZA65_RS12620	0.66	+0.6
2,703,841	+		DZA65_RS12620	0.73	+1.2
2,703,890	-		DZA65_RS12620	0.77	-0.6
2,703,890	-		DZA65_RS12620	0.77	+1.8
2,703,890	-		DZA65_RS12620	0.77	+0.4
2,703,890	-		DZA65_RS12620	0.77	+1.4
2,703,890	-		DZA65_RS12620	0.77	+1.0
2,703,890	-		DZA65_RS12620	0.77	-1.7
2,704,078	-				-0.2
2,704,105	-				-1.0
2,704,127	+				-0.6
2,704,127	+				-0.1
2,704,127	+				-0.4
2,704,127	+				-0.9
2,704,128	-				+1.0
2,704,130	+				+0.7
2,704,130	+				+1.4
2,704,130	+				+0.4
2,704,131	-				+0.0
2,704,131	-				+3.4
2,704,169	-				+0.0
2,704,198	+				+0.1
2,704,198	+				+0.9
2,704,198	+				+1.7
2,704,199	-				-0.2
2,704,199	-				+0.1
2,704,201	+				+0.1
2,704,202	-				-1.2
2,704,202	-				+0.8
2,704,202	-				+1.1
2,704,236	+				+0.8
2,704,322	+		DZA65_RS12625	0.12	+0.4
2,704,322	+		DZA65_RS12625	0.12	-1.4
2,704,322	+		DZA65_RS12625	0.12	-0.9
2,704,323	-		DZA65_RS12625	0.13	+1.6
2,704,323	-		DZA65_RS12625	0.13	-2.2
2,704,323	-		DZA65_RS12625	0.13	+0.1
2,704,323	-		DZA65_RS12625	0.13	+1.6
2,704,359	+		DZA65_RS12625	0.19	-0.6
2,704,390	+		DZA65_RS12625	0.24	-1.2
2,704,406	+		DZA65_RS12625	0.27	+1.0
2,704,407	-		DZA65_RS12625	0.27	+2.0
2,704,407	-		DZA65_RS12625	0.27	+0.7
2,704,407	-		DZA65_RS12625	0.27	-1.0
2,704,458	+		DZA65_RS12625	0.36	+1.4
2,704,471	-		DZA65_RS12625	0.39	-0.4
2,704,479	+		DZA65_RS12625	0.40	-0.6
2,704,480	-		DZA65_RS12625	0.40	+0.0
2,704,480	-		DZA65_RS12625	0.40	+1.0
2,704,498	+		DZA65_RS12625	0.43	+1.4
2,704,500	+		DZA65_RS12625	0.44	-2.6
2,704,500	+		DZA65_RS12625	0.44	-2.0
2,704,500	+		DZA65_RS12625	0.44	-0.0
2,704,500	+		DZA65_RS12625	0.44	+1.0
2,704,500	+		DZA65_RS12625	0.44	+1.2
2,704,501	-		DZA65_RS12625	0.44	-3.0
2,704,501	-		DZA65_RS12625	0.44	+1.8
2,704,501	-		DZA65_RS12625	0.44	-1.8
2,704,501	-		DZA65_RS12625	0.44	+1.1
2,704,506	+		DZA65_RS12625	0.45	-1.6
2,704,507	-		DZA65_RS12625	0.45	+0.4
2,704,611	+				-0.6
2,704,671	+		DZA65_RS12625	0.74	-2.4
2,704,671	+		DZA65_RS12625	0.74	+0.1
2,704,681	-		DZA65_RS12625	0.76	-0.4
2,704,699	+		DZA65_RS12625	0.79	+0.5
2,704,699	+		DZA65_RS12625	0.79	+0.6
2,704,700	-		DZA65_RS12625	0.79	+0.4
2,704,700	-		DZA65_RS12625	0.79	+0.2
2,704,700	-		DZA65_RS12625	0.79	+1.7
2,704,700	-		DZA65_RS12625	0.79	+0.1
2,704,749	+		DZA65_RS12625	0.88	-1.8
2,704,830	+				-0.9
2,704,831	-				+0.9
2,704,834	+				+0.6
2,704,834	+				-0.4
2,704,834	+				+2.5
2,704,834	+				-0.9
2,704,835	-				-0.2
2,704,835	-				+0.4
2,704,835	-				+0.1
2,704,838	+				-2.2
2,704,838	+				-0.1
2,704,838	+				+0.8
2,704,838	+				+0.3
2,704,839	-				+0.7
2,704,839	-				+0.4
2,704,854	-				-1.0
2,704,856	+				-0.6
2,704,856	+				+0.5
2,704,857	-				-1.2
2,704,858	+				-2.6
2,704,858	+				+1.7
2,704,859	-				-1.0
2,704,859	-				-1.3
2,704,867	+				+0.3
2,704,867	+				+0.5
2,704,867	+				-0.4
2,704,868	-				+0.1
2,704,868	-				-2.6
2,704,877	+				+0.4
2,704,877	+				-0.2
2,704,877	+				-1.1
2,704,877	+				+0.6
2,704,877	+				-0.5
2,704,877	+				+0.4
2,704,878	-				+1.4
2,704,878	-				-0.9
2,704,878	-				-3.1
2,704,934	+				-0.6
2,704,999	+				+0.6
2,704,999	+				+0.3
2,704,999	+				+1.5
2,704,999	+				-0.1
2,704,999	+				-0.4
2,704,999	+				-0.5
2,704,999	+				+1.7
2,705,000	-				-0.6
2,705,000	-				-1.2
2,705,000	-				-1.6
2,705,000	-				-1.0
2,705,000	-				-0.2
2,705,000	-				-0.9
2,705,000	-				+0.1
2,705,000	-				+0.7
2,705,000	-				+1.2
2,705,003	+				+0.4
2,705,003	+				+0.1
2,705,004	-				-0.6
2,705,004	-				+0.2
2,705,055	+				-0.6
2,705,055	+		DZA65_RS12630	0.20	-0.2
2,705,055	+		DZA65_RS12630	0.20	+0.1
2,705,056	-		DZA65_RS12630	0.20	-0.4
2,705,056	-		DZA65_RS12630	0.20	-1.2
2,705,056	-		DZA65_RS12630	0.20	-1.2
2,705,056	-		DZA65_RS12630	0.20	+0.4
2,705,056	-				+1.0
2,705,059	+		DZA65_RS12630	0.21	-0.9
2,705,059	+		DZA65_RS12630	0.21	-1.7
2,705,059	+		DZA65_RS12630	0.21	+0.8
2,705,059	+		DZA65_RS12630	0.21	-0.5
2,705,060	-		DZA65_RS12630	0.21	+1.0
2,705,060	-		DZA65_RS12630	0.21	+0.4
2,705,060	-		DZA65_RS12630	0.21	-1.6
2,705,060	-		DZA65_RS12630	0.21	-1.6
2,705,060	-		DZA65_RS12630	0.21	-1.4
2,705,060	-		DZA65_RS12630	0.21	+0.5
2,705,060	-		DZA65_RS12630	0.21	-1.0
2,705,060	-		DZA65_RS12630	0.21	-0.6
2,705,078	+		DZA65_RS12630	0.26	-0.7
2,705,079	-		DZA65_RS12630	0.26	+1.2
2,705,079	-		DZA65_RS12630	0.26	-2.2
2,705,141	+		DZA65_RS12630	0.42	-0.6
2,705,141	+		DZA65_RS12630	0.42	-0.6
2,705,141	+		DZA65_RS12630	0.42	-0.8
2,705,142	-		DZA65_RS12630	0.43	+0.4
2,705,142	-		DZA65_RS12630	0.43	-2.2
2,705,189	+		DZA65_RS12630	0.55	-1.2
2,705,451	+				+0.0
2,705,457	-				+2.2
2,705,678	+		DZA65_RS12635	0.39	+1.7
2,705,678	+		DZA65_RS12635	0.39	-0.0
2,705,678	+		DZA65_RS12635	0.39	-0.6
2,705,679	-		DZA65_RS12635	0.40	-0.2
2,705,681	+		DZA65_RS12635	0.40	+1.6
2,705,681	+		DZA65_RS12635	0.40	-0.4
2,705,681	+		DZA65_RS12635	0.40	+1.8
2,705,681	+		DZA65_RS12635	0.40	-1.2
2,705,681	+		DZA65_RS12635	0.40	+0.7
2,705,681	+		DZA65_RS12635	0.40	+0.4
2,705,681	+		DZA65_RS12635	0.40	-1.6
2,705,682	-		DZA65_RS12635	0.40	-0.2
2,705,682	-		DZA65_RS12635	0.40	+0.8
2,705,682	-		DZA65_RS12635	0.40	-0.2
2,705,682	-		DZA65_RS12635	0.40	-0.4
2,705,682	-		DZA65_RS12635	0.40	-0.8
2,705,682	-		DZA65_RS12635	0.40	+1.2
2,705,742	-		DZA65_RS12635	0.51	-0.2
2,705,742	-		DZA65_RS12635	0.51	-0.4