Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12500

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,675,682	+		DZA65_RS12495	0.42	-1.0
2,675,682	+		DZA65_RS12495	0.42	-1.5
2,675,682	+		DZA65_RS12495	0.42	+0.4
2,675,682	+		DZA65_RS12495	0.42	-0.4
2,675,682	+		DZA65_RS12495	0.42	-0.9
2,675,682	+		DZA65_RS12495	0.42	-0.6
2,675,682	+		DZA65_RS12495	0.42	-1.2
2,675,683	-		DZA65_RS12495	0.42	-0.0
2,675,683	-		DZA65_RS12495	0.42	-1.7
2,675,683	-		DZA65_RS12495	0.42	-2.0
2,675,763	+		DZA65_RS12495	0.48	-0.9
2,675,763	+		DZA65_RS12495	0.48	-0.1
2,675,764	-		DZA65_RS12495	0.49	-2.8
2,675,764	-		DZA65_RS12495	0.49	+0.2
2,675,764	-		DZA65_RS12495	0.49	+0.9
2,675,786	+		DZA65_RS12495	0.50	-0.9
2,675,786	+		DZA65_RS12495	0.50	+1.0
2,675,800	+		DZA65_RS12495	0.51	+1.4
2,675,801	-		DZA65_RS12495	0.51	-0.1
2,675,801	-		DZA65_RS12495	0.51	+0.4
2,675,801	-		DZA65_RS12495	0.51	+0.1
2,675,801	-		DZA65_RS12495	0.51	-1.0
2,675,803	-		DZA65_RS12495	0.52	-0.5
2,675,814	+		DZA65_RS12495	0.52	-1.2
2,675,814	+		DZA65_RS12495	0.52	+0.4
2,675,815	-		DZA65_RS12495	0.53	-1.2
2,675,815	-		DZA65_RS12495	0.53	+0.1
2,675,815	-		DZA65_RS12495	0.53	-0.2
2,675,931	-		DZA65_RS12495	0.62	-0.2
2,675,973	-		DZA65_RS12495	0.65	+0.8
2,675,981	+		DZA65_RS12495	0.66	-0.8
2,675,981	+		DZA65_RS12495	0.66	+2.2
2,675,993	+		DZA65_RS12495	0.67	-0.9
2,676,009	+		DZA65_RS12495	0.68	-2.2
2,676,015	+		DZA65_RS12495	0.68	+0.4
2,676,016	-		DZA65_RS12495	0.68	-0.3
2,676,016	-		DZA65_RS12495	0.68	-0.1
2,676,174	-		DZA65_RS12495	0.81	-0.6
2,676,185	+				+0.4
2,676,186	-		DZA65_RS12495	0.82	-1.0
2,676,186	-		DZA65_RS12495	0.82	-2.6
2,676,325	+				+0.4
2,676,326	-				-2.2
2,676,326	-				+0.2
2,676,326	-				+1.6
2,676,459	-				-0.1
2,676,465	-				-1.0
2,676,465	-				-2.2
2,676,465	-				-0.4
2,676,488	-				+0.8
2,676,502	+				+0.9
2,676,517	+				-0.2
2,676,517	+				-1.2
2,676,517	+				+0.2
2,676,517	+				+1.2
2,676,517	+				+0.2
2,676,517	+				+0.4
2,676,517	+				-0.6
2,676,517	+				-0.6
2,676,517	+				-0.4
2,676,518	-				+0.0
2,676,518	-				+0.4
2,676,518	-				+0.1
2,676,518	-				-2.2
2,676,518	-				-1.1
2,676,518	-				+0.6
2,676,518	-				-1.2
2,676,518	-				+1.3
2,676,518	-				+1.1
2,676,518	-				+0.8
2,676,518	-				+0.9
2,676,518	-				-0.5
2,676,518	-				+1.2
2,676,518	-				-0.6
2,676,518	-				-0.5
2,676,519	+				-0.9
2,676,519	+				-1.1
2,676,519	+				-1.5
2,676,519	+				+1.2
2,676,519	+				+1.4
2,676,519	+				-1.6
2,676,520	-				+1.2
2,676,520	-				+0.1
2,676,520	-				-0.9
2,676,523	+				-0.2
2,676,546	+				+0.7
2,676,575	+				-1.2
2,676,575	+				+0.6
2,676,576	-				-0.2
2,676,621	-				-1.0
2,676,636	+				-0.1
2,676,637	-				+0.7
2,676,637	-				+1.6
2,676,772	+		DZA65_RS12500	0.12	+1.4
2,676,790	+		DZA65_RS12500	0.14	+0.7
2,676,790	+		DZA65_RS12500	0.14	-1.1
2,676,791	-		DZA65_RS12500	0.14	-0.3
2,676,791	-		DZA65_RS12500	0.14	-2.0
2,676,812	+		DZA65_RS12500	0.16	-0.4
2,676,812	+		DZA65_RS12500	0.16	+0.1
2,676,906	+		DZA65_RS12500	0.25	-1.1
2,676,906	+		DZA65_RS12500	0.25	+1.1
2,676,906	+		DZA65_RS12500	0.25	-1.8
2,676,906	+		DZA65_RS12500	0.25	-0.1
2,676,906	+		DZA65_RS12500	0.25	-0.5
2,676,907	-		DZA65_RS12500	0.25	+1.9
2,676,907	-		DZA65_RS12500	0.25	+0.9
2,676,907	-		DZA65_RS12500	0.25	+0.9
2,676,907	-		DZA65_RS12500	0.25	-2.0
2,676,912	-		DZA65_RS12500	0.25	+1.1
2,676,912	-		DZA65_RS12500	0.25	+0.4
2,676,969	+		DZA65_RS12500	0.30	+0.5
2,676,969	+		DZA65_RS12500	0.30	-1.8
2,676,969	+		DZA65_RS12500	0.30	+0.8
2,676,969	+		DZA65_RS12500	0.30	-0.2
2,676,969	+		DZA65_RS12500	0.30	+0.9
2,676,969	+		DZA65_RS12500	0.30	-0.3
2,676,969	+		DZA65_RS12500	0.30	+1.0
2,676,969	+				-1.0
2,676,969	+		DZA65_RS12500	0.30	-0.2
2,676,969	+				-0.2
2,676,970	-		DZA65_RS12500	0.31	-1.2
2,676,970	-		DZA65_RS12500	0.31	+1.2
2,676,970	-		DZA65_RS12500	0.31	-1.6
2,676,970	-		DZA65_RS12500	0.31	+0.8
2,676,970	-		DZA65_RS12500	0.31	-0.8
2,677,019	-		DZA65_RS12500	0.35	-2.0
2,677,171	+		DZA65_RS12500	0.50	+1.3
2,677,172	-		DZA65_RS12500	0.50	-1.6
2,677,187	+		DZA65_RS12500	0.51	-2.0
2,677,188	-		DZA65_RS12500	0.51	+0.8
2,677,188	-		DZA65_RS12500	0.51	+0.2
2,677,241	+		DZA65_RS12500	0.56	+0.7
2,677,253	-		DZA65_RS12500	0.57	-1.1
2,677,295	+		DZA65_RS12500	0.61	-1.4
2,677,295	+		DZA65_RS12500	0.61	+1.5
2,677,295	+		DZA65_RS12500	0.61	+1.1
2,677,420	+		DZA65_RS12500	0.73	+0.6
2,677,420	+		DZA65_RS12500	0.73	+0.4
2,677,420	+		DZA65_RS12500	0.73	+1.2
2,677,420	+		DZA65_RS12500	0.73	-2.0
2,677,420	+		DZA65_RS12500	0.73	+0.1
2,677,420	+		DZA65_RS12500	0.73	+1.6
2,677,420	+		DZA65_RS12500	0.73	+1.4
2,677,421	-		DZA65_RS12500	0.73	+2.1
2,677,421	-		DZA65_RS12500	0.73	+0.7
2,677,421	-		DZA65_RS12500	0.73	+0.7
2,677,421	-		DZA65_RS12500	0.73	-1.7
2,677,421	-		DZA65_RS12500	0.73	-2.7
2,677,425	-		DZA65_RS12500	0.74	+0.5
2,677,425	-		DZA65_RS12500	0.74	-0.4
2,677,475	+		DZA65_RS12500	0.78	-0.6
2,677,475	+		DZA65_RS12500	0.78	-1.5
2,677,475	+		DZA65_RS12500	0.78	+1.4
2,677,475	+		DZA65_RS12500	0.78	+0.0
2,677,475	+		DZA65_RS12500	0.78	+0.4
2,677,475	+		DZA65_RS12500	0.78	-1.0
2,677,476	-		DZA65_RS12500	0.79	+0.9
2,677,476	-		DZA65_RS12500	0.79	-0.6
2,677,559	+		DZA65_RS12500	0.86	+0.4
2,677,559	+		DZA65_RS12500	0.86	+1.1
2,677,559	+		DZA65_RS12500	0.86	-2.5
2,677,559	+		DZA65_RS12500	0.86	-0.9
2,677,560	-		DZA65_RS12500	0.86	-0.9
2,677,560	-		DZA65_RS12500	0.86	+0.8
2,677,560	-		DZA65_RS12500	0.86	-0.6
2,677,560	-		DZA65_RS12500	0.86	+2.2
2,677,560	-		DZA65_RS12500	0.86	-2.5
2,677,673	+				+1.1
2,677,768	+				-1.0
2,677,768	+				-2.0
2,677,804	+				-0.4
2,677,850	+				-0.6
2,677,850	+				-0.9
2,677,850	+				-0.3
2,677,850	+				-1.1
2,677,850	+				-0.6
2,677,850	+				+0.8
2,677,851	-				-0.6
2,677,851	-				-1.6
2,677,851	-				-1.5
2,677,851	-				-1.6
2,677,851	-				-0.1
2,677,851	-				-0.2
2,677,851	-				-1.1
2,677,855	-				-0.1
2,677,855	-				+0.4
2,677,855	-				-0.5
2,677,873	+				+0.9
2,677,874	-				-0.5
2,677,874	-				-1.2
2,677,895	+				-1.2
2,677,896	-				-0.8
2,677,896	-				-1.0
2,677,934	-				-2.2
2,677,934	-				-2.6
2,678,018	+				-2.8
2,678,033	+				-1.1
2,678,137	+		DZA65_RS12505	0.13	-2.0
2,678,137	+		DZA65_RS12505	0.13	-2.0
2,678,171	+		DZA65_RS12505	0.15	+0.4
2,678,172	-		DZA65_RS12505	0.15	-3.1
2,678,223	-		DZA65_RS12505	0.17	-2.2
2,678,224	+		DZA65_RS12505	0.17	-0.0
2,678,225	-		DZA65_RS12505	0.17	-2.4
2,678,225	-				-2.0
2,678,225	-				-2.2
2,678,333	+		DZA65_RS12505	0.23	-1.6
2,678,333	+		DZA65_RS12505	0.23	-2.6
2,678,357	+		DZA65_RS12505	0.24	-3.2
2,678,357	+		DZA65_RS12505	0.24	-2.2
2,678,362	+		DZA65_RS12505	0.24	-2.4
2,678,363	-		DZA65_RS12505	0.24	-1.1
2,678,363	-		DZA65_RS12505	0.24	+0.2
2,678,380	+		DZA65_RS12505	0.25	-4.0
2,678,380	+		DZA65_RS12505	0.25	-2.4
2,678,380	+		DZA65_RS12505	0.25	-2.4
2,678,380	+		DZA65_RS12505	0.25	-2.6
2,678,381	-		DZA65_RS12505	0.25	-2.6
2,678,381	-		DZA65_RS12505	0.25	-3.4
2,678,432	+		DZA65_RS12505	0.28	-2.4
2,678,433	-		DZA65_RS12505	0.28	+0.5
2,678,584	+		DZA65_RS12505	0.35	+0.0
2,678,584	+				-1.6
2,678,587	+		DZA65_RS12505	0.35	-2.4
2,678,587	+		DZA65_RS12505	0.35	+0.4
2,678,588	-		DZA65_RS12505	0.35	-1.5
2,678,588	-		DZA65_RS12505	0.35	+0.4