Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12445

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,659,751	-		DZA65_RS12440	0.38	-0.2
2,659,852	+		DZA65_RS12440	0.47	-1.2
2,659,852	+		DZA65_RS12440	0.47	-1.6
2,659,853	-		DZA65_RS12440	0.47	+0.6
2,659,853	-		DZA65_RS12440	0.47	-0.6
2,659,853	-		DZA65_RS12440	0.47	+0.8
2,659,853	-		DZA65_RS12440	0.47	-0.9
2,659,853	-		DZA65_RS12440	0.47	-0.5
2,659,853	-		DZA65_RS12440	0.47	-0.2
2,659,856	+		DZA65_RS12440	0.47	+0.3
2,659,856	+		DZA65_RS12440	0.47	-1.5
2,659,856	+		DZA65_RS12440	0.47	+0.3
2,659,856	+		DZA65_RS12440	0.47	-0.7
2,659,856	+		DZA65_RS12440	0.47	+0.5
2,659,856	+		DZA65_RS12440	0.47	+1.3
2,659,856	+		DZA65_RS12440	0.47	-1.7
2,659,856	+		DZA65_RS12440	0.47	+0.0
2,659,856	+		DZA65_RS12440	0.47	+0.3
2,659,856	+		DZA65_RS12440	0.47	+1.3
2,659,856	+		DZA65_RS12440	0.47	-1.2
2,659,856	+		DZA65_RS12440	0.47	+0.8
2,659,857	-		DZA65_RS12440	0.47	-0.6
2,659,857	-		DZA65_RS12440	0.47	+0.9
2,659,857	-		DZA65_RS12440	0.47	-1.8
2,659,857	-		DZA65_RS12440	0.47	+1.2
2,659,857	-		DZA65_RS12440	0.47	-1.1
2,659,857	-		DZA65_RS12440	0.47	+1.4
2,659,857	-		DZA65_RS12440	0.47	-0.4
2,659,857	-		DZA65_RS12440	0.47	-0.7
2,659,857	-		DZA65_RS12440	0.47	-0.2
2,659,857	-		DZA65_RS12440	0.47	-0.4
2,659,857	-		DZA65_RS12440	0.47	+1.1
2,659,857	-		DZA65_RS12440	0.47	-0.2
2,660,007	+		DZA65_RS12440	0.60	-0.8
2,660,106	-		DZA65_RS12440	0.69	+1.9
2,660,270	+		DZA65_RS12440	0.83	-2.0
2,660,271	-		DZA65_RS12440	0.83	+0.3
2,660,271	-		DZA65_RS12440	0.83	-0.4
2,660,271	-		DZA65_RS12440	0.83	-0.1
2,660,271	-		DZA65_RS12440	0.83	+1.1
2,660,354	-				+3.3
2,660,407	+				-1.1
2,660,408	-				-0.3
2,660,408	-				-1.9
2,660,444	+				+2.2
2,660,444	+				+0.3
2,660,445	-				+0.3
2,660,445	-				+0.8
2,660,460	+				-0.1
2,660,460	+				-0.1
2,660,460	+				-0.8
2,660,479	+				-0.4
2,660,480	-				+0.3
2,660,494	+				+0.0
2,660,494	+				+0.6
2,660,494	+				+0.6
2,660,495	-				+0.3
2,660,495	-				+1.0
2,660,505	+				-0.1
2,660,505	+				+0.8
2,660,505	+				-0.1
2,660,590	-				-0.8
2,660,599	+				-1.9
2,660,600	-				+0.5
2,660,654	+				+1.1
2,660,654	+				+0.9
2,660,654	+				+0.1
2,660,655	-				+1.6
2,660,681	-				-0.2
2,660,695	+				+0.9
2,660,695	+				+0.0
2,660,696	-				-0.5
2,660,696	-				-0.2
2,660,696	-				+0.5
2,660,716	-				+0.3
2,660,718	+				+0.4
2,660,718	+				-0.9
2,660,718	+				+1.8
2,660,718	+				-0.8
2,660,718	+				-1.0
2,660,718	+				+0.6
2,660,718	+				-1.3
2,660,718	+				+0.2
2,660,718	+				-0.7
2,660,719	-				+1.7
2,660,719	-				+0.8
2,660,719	-				+0.7
2,660,719	-				+1.0
2,660,719	-				-0.1
2,660,719	-				-0.8
2,660,745	+				+1.9
2,660,746	-				-1.5
2,660,746	-				-0.8
2,660,746	-				-0.5
2,660,746	-				+1.3
2,660,746	-				-0.7
2,660,776	-				-0.1
2,660,781	+				-1.2
2,660,781	+				-1.0
2,660,781	+				-0.7
2,660,781	+				-0.9
2,660,781	+				-1.7
2,660,782	-				+0.1
2,660,784	+				+0.0
2,660,784	+				+0.3
2,660,785	-				-2.2
2,660,785	-				-1.4
2,660,795	+				-1.0
2,660,795	+				+0.3
2,660,795	+				-0.5
2,660,795	+				+0.1
2,660,795	+				+1.9
2,660,796	-				-0.2
2,660,807	+		DZA65_RS12445	0.12	-0.7
2,660,807	+		DZA65_RS12445	0.12	-0.0
2,660,807	+		DZA65_RS12445	0.12	+1.5
2,660,808	-		DZA65_RS12445	0.12	-0.2
2,660,808	-		DZA65_RS12445	0.12	-0.7
2,660,829	+		DZA65_RS12445	0.16	+0.5
2,660,829	+		DZA65_RS12445	0.16	+1.9
2,660,829	+		DZA65_RS12445	0.16	+0.9
2,660,829	+		DZA65_RS12445	0.16	+0.8
2,660,829	+		DZA65_RS12445	0.16	+1.2
2,660,829	+		DZA65_RS12445	0.16	-0.7
2,660,830	-		DZA65_RS12445	0.16	+1.8
2,660,830	-		DZA65_RS12445	0.16	+2.9
2,660,830	-		DZA65_RS12445	0.16	-0.2
2,660,841	+		DZA65_RS12445	0.18	-0.4
2,660,841	+		DZA65_RS12445	0.18	-0.1
2,660,866	+		DZA65_RS12445	0.22	+3.3
2,660,866	+		DZA65_RS12445	0.22	-0.9
2,660,867	-		DZA65_RS12445	0.22	-1.0
2,660,867	-		DZA65_RS12445	0.22	+0.6
2,660,867	-		DZA65_RS12445	0.22	+0.5
2,660,867	-		DZA65_RS12445	0.22	+0.9
2,660,888	-		DZA65_RS12445	0.26	-0.4
2,660,902	+		DZA65_RS12445	0.29	+0.2
2,661,057	+		DZA65_RS12445	0.56	-0.5
2,661,057	+		DZA65_RS12445	0.56	+0.6
2,661,057	+		DZA65_RS12445	0.56	-0.2
2,661,057	+		DZA65_RS12445	0.56	+0.6
2,661,058	-		DZA65_RS12445	0.57	-0.7
2,661,058	-		DZA65_RS12445	0.57	+1.1
2,661,096	+		DZA65_RS12445	0.63	+0.9
2,661,097	-		DZA65_RS12445	0.63	-2.0
2,661,131	-		DZA65_RS12445	0.70	-0.4
2,661,146	+		DZA65_RS12445	0.72	+0.6
2,661,147	-		DZA65_RS12445	0.72	+0.6
2,661,147	-		DZA65_RS12445	0.72	-0.9
2,661,148	+		DZA65_RS12445	0.73	-1.2
2,661,148	+		DZA65_RS12445	0.73	+0.3
2,661,148	+		DZA65_RS12445	0.73	+0.3
2,661,148	+		DZA65_RS12445	0.73	+0.1
2,661,149	-		DZA65_RS12445	0.73	-0.3
2,661,258	-				+0.6
2,661,279	+				+0.7
2,661,280	-				+2.3
2,661,280	-				-0.2
2,661,366	+				-0.0
2,661,366	+				-1.7
2,661,366	+				-2.5
2,661,366	+				-2.7
2,661,366	+				-0.7
2,661,366	+				+2.1
2,661,366	+				-0.9
2,661,367	-				-0.1
2,661,367	-				-2.2
2,661,367	-				-0.7
2,661,367	-				+0.3
2,661,374	+				+0.3
2,661,375	-				+1.3
2,661,375	-				-2.2
2,661,375	-				+0.3
2,661,413	+				+0.3
2,661,414	-				+1.2
2,661,414	-				-0.1
2,661,414	-				-1.2
2,661,435	+				-0.2
2,661,435	+				-0.9
2,661,435	+				+0.3
2,661,436	-				-1.7
2,661,524	+		DZA65_RS12450	0.22	-2.5
2,661,600	+		DZA65_RS12450	0.33	+0.5
2,661,601	-		DZA65_RS12450	0.34	+0.8
2,661,601	-		DZA65_RS12450	0.34	-0.8
2,661,821	+		DZA65_RS12450	0.66	-1.0
2,661,821	+		DZA65_RS12450	0.66	+1.0
2,661,821	+		DZA65_RS12450	0.66	-1.4
2,661,821	+		DZA65_RS12450	0.66	-0.0
2,661,821	+		DZA65_RS12450	0.66	-0.2
2,661,821	+		DZA65_RS12450	0.66	+0.3
2,661,822	-		DZA65_RS12450	0.66	+1.3
2,661,822	-		DZA65_RS12450	0.66	-1.2
2,661,822	-		DZA65_RS12450	0.66	+0.9
2,661,822	-		DZA65_RS12450	0.66	+0.8
2,661,822	-		DZA65_RS12450	0.66	+0.9
2,661,822	-		DZA65_RS12450	0.66	-1.7
2,661,954	-		DZA65_RS12450	0.86	-1.8
2,661,963	-		DZA65_RS12450	0.87	-0.7
2,661,969	-		DZA65_RS12450	0.88	-0.2
2,662,010	+				+0.1
2,662,010	+				-0.1
2,662,010	+				-1.5
2,662,010	+				+0.3
2,662,011	-				+1.5
2,662,011	-				+2.3
2,662,011	-				-0.3
2,662,011	-				-0.3
2,662,011	-				-0.2
2,662,016	+				+0.7
2,662,016	+				-0.5
2,662,016	+				+0.5
2,662,016	+				+1.3
2,662,016	+				+0.3
2,662,017	-				-0.2
2,662,017	-				-2.2
2,662,017	-				+1.5
2,662,017	-				+0.0
2,662,017	-				+0.8
2,662,017	-				-2.2
2,662,020	+				-0.2
2,662,020	+				-0.1
2,662,021	-				-2.5
2,662,021	-				-1.5
2,662,043	+				-0.0
2,662,043	+				-0.4
2,662,043	+				-1.1
2,662,044	-				-0.1
2,662,236	+		DZA65_RS12455	0.26	-1.6
2,662,290	+		DZA65_RS12455	0.33	+1.1
2,662,290	+		DZA65_RS12455	0.33	+0.4
2,662,290	+		DZA65_RS12455	0.33	-0.2
2,662,290	+		DZA65_RS12455	0.33	+1.0
2,662,291	-		DZA65_RS12455	0.33	-0.6
2,662,291	-		DZA65_RS12455	0.33	+1.4
2,662,291	-		DZA65_RS12455	0.33	+0.5