Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12290

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,624,860	-		DZA65_RS12280	0.46	+1.1
2,624,985	+		DZA65_RS12280	0.61	+0.1
2,624,986	-		DZA65_RS12280	0.61	-1.2
2,625,026	+		DZA65_RS12280	0.66	+0.2
2,625,026	+		DZA65_RS12280	0.66	-2.2
2,625,027	-		DZA65_RS12280	0.66	-0.6
2,625,054	-		DZA65_RS12280	0.69	-2.2
2,625,209	+		DZA65_RS12280	0.88	-0.5
2,625,210	-		DZA65_RS12280	0.88	+0.4
2,625,210	-		DZA65_RS12280	0.88	+0.0
2,625,210	-		DZA65_RS12280	0.88	-1.8
2,625,236	+				-0.1
2,625,236	+				-0.5
2,625,236	+				-0.2
2,625,236	+				+0.3
2,625,237	-				-0.2
2,625,309	-				-0.6
2,625,309	-				-1.8
2,625,369	+		DZA65_RS12285	0.21	+0.5
2,625,509	+				+0.7
2,625,509	+				-0.7
2,625,509	+				+0.5
2,625,510	-				+0.5
2,625,510	-				-0.1
2,625,511	+				+0.5
2,625,581	-				+0.2
2,625,609	+				+1.3
2,625,610	-				-1.1
2,625,660	-				-0.2
2,625,678	+				-0.4
2,625,678	+				-0.7
2,625,678	+				-0.1
2,625,678	+				-0.7
2,625,679	-				-1.5
2,625,679	-				+1.4
2,625,679	-				-0.2
2,625,679	-				+0.5
2,625,679	-				-0.4
2,625,679	-				-0.1
2,625,691	-				-0.9
2,625,691	-				-0.0
2,625,691	-				+0.3
2,625,710	-				+0.6
2,625,710	-				-0.7
2,625,723	-				-0.6
2,625,758	+				+2.0
2,625,759	-				-1.4
2,625,759	-				+1.1
2,625,759	-				+0.6
2,625,764	+				-0.5
2,625,764	+				-2.7
2,625,764	+				-0.1
2,625,764	+				-2.5
2,625,764	+				+0.3
2,625,770	+				+0.6
2,625,770	+				+0.2
2,625,782	+				-1.5
2,625,782	+				+1.9
2,625,782	+				-1.2
2,625,782	+				-0.2
2,625,782	+				-1.7
2,625,782	+				-3.0
2,625,783	-				-0.7
2,625,783	-				+0.0
2,625,896	-				-1.2
2,626,146	+		DZA65_RS12290	0.28	+1.5
2,626,146	+		DZA65_RS12290	0.28	+1.8
2,626,147	-		DZA65_RS12290	0.28	-1.1
2,626,149	+		DZA65_RS12290	0.28	-0.3
2,626,150	-		DZA65_RS12290	0.28	-0.3
2,626,150	-		DZA65_RS12290	0.28	-1.7
2,626,150	-		DZA65_RS12290	0.28	+0.5
2,626,158	+		DZA65_RS12290	0.29	-1.0
2,626,158	+		DZA65_RS12290	0.29	+1.0
2,626,197	+		DZA65_RS12290	0.32	+0.3
2,626,197	+		DZA65_RS12290	0.32	+0.6
2,626,197	+		DZA65_RS12290	0.32	-0.1
2,626,198	-		DZA65_RS12290	0.32	-1.2
2,626,198	-		DZA65_RS12290	0.32	-0.1
2,626,198	-		DZA65_RS12290	0.32	-0.7
2,626,410	+		DZA65_RS12290	0.47	-0.1
2,626,411	-		DZA65_RS12290	0.47	-1.8
2,626,504	+		DZA65_RS12290	0.54	-1.5
2,626,505	-		DZA65_RS12290	0.54	+1.2
2,626,516	-		DZA65_RS12290	0.55	-1.1
2,626,624	-		DZA65_RS12290	0.63	+1.7
2,626,624	-		DZA65_RS12290	0.63	-1.0
2,626,686	+		DZA65_RS12290	0.67	+1.8
2,626,686	+		DZA65_RS12290	0.67	-1.7
2,626,686	+		DZA65_RS12290	0.67	-1.8
2,626,686	+		DZA65_RS12290	0.67	+2.5
2,626,686	+		DZA65_RS12290	0.67	+0.5
2,626,687	-		DZA65_RS12290	0.67	-0.3
2,626,687	-		DZA65_RS12290	0.67	-3.4
2,626,687	-				+0.8
2,626,687	-		DZA65_RS12290	0.67	-0.2
2,626,687	-		DZA65_RS12290	0.67	-1.0
2,626,687	-				+1.3
2,626,687	-		DZA65_RS12290	0.67	+0.3
2,626,710	+		DZA65_RS12290	0.69	+2.2
2,626,710	+		DZA65_RS12290	0.69	+1.0
2,626,711	-		DZA65_RS12290	0.69	-1.1
2,626,776	+		DZA65_RS12290	0.74	+0.3
2,626,776	+		DZA65_RS12290	0.74	-0.7
2,626,777	-		DZA65_RS12290	0.74	-1.8
2,626,777	-		DZA65_RS12290	0.74	+1.3
2,626,777	-		DZA65_RS12290	0.74	+0.9
2,626,935	-		DZA65_RS12290	0.85	-2.6
2,626,935	-		DZA65_RS12290	0.85	-0.9
2,626,994	+		DZA65_RS12290	0.89	-0.0
2,626,994	+		DZA65_RS12290	0.89	-2.2
2,626,994	+		DZA65_RS12290	0.89	+0.3
2,626,994	+		DZA65_RS12290	0.89	+0.5
2,626,994	+		DZA65_RS12290	0.89	+0.7
2,626,994	+		DZA65_RS12290	0.89	-1.5
2,626,994	+		DZA65_RS12290	0.89	-1.4
2,626,994	+		DZA65_RS12290	0.89	-0.1
2,626,994	+		DZA65_RS12290	0.89	-0.3
2,626,994	+		DZA65_RS12290	0.89	+2.2
2,626,995	-		DZA65_RS12290	0.90	+2.3
2,626,995	-		DZA65_RS12290	0.90	-0.5
2,626,995	-		DZA65_RS12290	0.90	+1.6
2,626,995	-		DZA65_RS12290	0.90	-0.6
2,626,995	-		DZA65_RS12290	0.90	-1.2
2,626,995	-		DZA65_RS12290	0.90	+1.2
2,627,053	+				-1.2
2,627,053	+				+0.7
2,627,054	-				+0.6
2,627,054	-				+1.8
2,627,054	-				-0.7
2,627,146	-				-1.1
2,627,205	+				+0.1
2,627,244	+				-2.2
2,627,244	+				-0.6
2,627,244	+				+0.9
2,627,244	+				+2.9
2,627,244	+				-1.2
2,627,244	+				-0.3
2,627,244	+				-1.0
2,627,245	-				-0.7
2,627,245	-				+2.3
2,627,292	+		DZA65_RS12295	0.11	-1.1
2,627,298	+		DZA65_RS12295	0.12	+2.3
2,627,299	-		DZA65_RS12295	0.12	-1.0
2,627,456	+		DZA65_RS12295	0.26	-0.2
2,627,456	+		DZA65_RS12295	0.26	-0.1
2,627,456	+		DZA65_RS12295	0.26	+1.8
2,627,456	+		DZA65_RS12295	0.26	-0.0
2,627,456	+		DZA65_RS12295	0.26	-2.7
2,627,457	-		DZA65_RS12295	0.26	-0.4
2,627,457	-		DZA65_RS12295	0.26	-1.7
2,627,457	-		DZA65_RS12295	0.26	+0.8
2,627,460	+		DZA65_RS12295	0.26	-0.6
2,627,461	-		DZA65_RS12295	0.26	+0.4
2,627,461	-		DZA65_RS12295	0.26	-2.2
2,627,501	+		DZA65_RS12295	0.30	+0.4
2,627,523	+		DZA65_RS12295	0.32	-2.5
2,627,523	+		DZA65_RS12295	0.32	-2.0
2,627,523	+		DZA65_RS12295	0.32	-0.1
2,627,524	-		DZA65_RS12295	0.32	+0.0
2,627,524	-		DZA65_RS12295	0.32	-1.0
2,627,524	-		DZA65_RS12295	0.32	+0.3
2,627,524	-		DZA65_RS12295	0.32	-1.4
2,627,524	-		DZA65_RS12295	0.32	+0.3
2,627,524	-		DZA65_RS12295	0.32	+0.9
2,627,524	-		DZA65_RS12295	0.32	+0.5
2,627,524	-		DZA65_RS12295	0.32	-0.5
2,627,524	-		DZA65_RS12295	0.32	-0.6
2,627,524	-		DZA65_RS12295	0.32	+1.7
2,627,561	+		DZA65_RS12295	0.36	-0.9
2,627,562	-		DZA65_RS12295	0.36	-1.5
2,627,757	+		DZA65_RS12295	0.53	-0.4
2,627,757	+		DZA65_RS12295	0.53	-0.2
2,627,757	+		DZA65_RS12295	0.53	-0.4
2,627,758	-		DZA65_RS12295	0.53	-1.5
2,627,758	-		DZA65_RS12295	0.53	-0.5
2,627,797	+		DZA65_RS12295	0.57	+0.8
2,627,884	+		DZA65_RS12295	0.65	-0.7
2,627,939	+		DZA65_RS12295	0.70	-1.0
2,627,939	+		DZA65_RS12295	0.70	-0.1
2,627,939	+		DZA65_RS12295	0.70	+0.0
2,627,939	+		DZA65_RS12295	0.70	-1.7
2,627,939	+		DZA65_RS12295	0.70	+0.9
2,627,939	+		DZA65_RS12295	0.70	+1.4
2,627,939	+		DZA65_RS12295	0.70	+0.3
2,627,939	+		DZA65_RS12295	0.70	-0.1
2,627,939	+		DZA65_RS12295	0.70	+0.3
2,627,940	-		DZA65_RS12295	0.70	-0.1
2,627,940	-		DZA65_RS12295	0.70	+0.7
2,627,940	-		DZA65_RS12295	0.70	+0.6
2,627,940	-		DZA65_RS12295	0.70	-0.7
2,627,940	-		DZA65_RS12295	0.70	+1.2
2,627,940	-		DZA65_RS12295	0.70	+0.3
2,627,940	-		DZA65_RS12295	0.70	-0.2
2,627,942	+		DZA65_RS12295	0.70	+0.5
2,627,942	+		DZA65_RS12295	0.70	+0.3
2,627,942	+		DZA65_RS12295	0.70	-0.7
2,627,943	-		DZA65_RS12295	0.70	+1.5
2,628,012	+		DZA65_RS12295	0.76	+0.0
2,628,012	+		DZA65_RS12295	0.76	-0.3
2,628,013	-		DZA65_RS12295	0.77	-0.5
2,628,013	-		DZA65_RS12295	0.77	+0.8
2,628,013	-		DZA65_RS12295	0.77	+0.3
2,628,013	-		DZA65_RS12295	0.77	-1.0
2,628,013	-		DZA65_RS12295	0.77	+0.6
2,628,024	+		DZA65_RS12295	0.78	-1.2
2,628,025	-		DZA65_RS12295	0.78	-1.0
2,628,025	-		DZA65_RS12295	0.78	-2.0
2,628,112	+		DZA65_RS12295	0.85	+0.8