Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11730

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,502,390	+		DZA65_RS11725	0.42	-0.7
2,502,390	+		DZA65_RS11725	0.42	+0.3
2,502,390	+		DZA65_RS11725	0.42	-0.8
2,502,391	-		DZA65_RS11725	0.42	+0.1
2,502,391	-		DZA65_RS11725	0.42	-0.5
2,502,405	+		DZA65_RS11725	0.43	-1.9
2,502,405	+		DZA65_RS11725	0.43	-2.9
2,502,405	+		DZA65_RS11725	0.43	-1.3
2,502,406	-		DZA65_RS11725	0.43	-0.4
2,502,406	-		DZA65_RS11725	0.43	+0.5
2,502,428	-		DZA65_RS11725	0.44	+1.9
2,502,465	+		DZA65_RS11725	0.46	+2.1
2,502,466	-		DZA65_RS11725	0.46	+0.3
2,502,479	+		DZA65_RS11725	0.47	-0.1
2,502,504	+		DZA65_RS11725	0.49	-2.4
2,502,504	+		DZA65_RS11725	0.49	+0.3
2,502,513	-		DZA65_RS11725	0.49	+1.2
2,502,523	+		DZA65_RS11725	0.50	+0.7
2,502,552	-		DZA65_RS11725	0.52	+1.3
2,502,750	+		DZA65_RS11725	0.64	-0.1
2,502,765	+		DZA65_RS11725	0.65	-2.9
2,502,765	+		DZA65_RS11725	0.65	+0.9
2,502,765	+		DZA65_RS11725	0.65	+2.0
2,502,766	-		DZA65_RS11725	0.65	+0.2
2,502,766	-		DZA65_RS11725	0.65	-1.7
2,502,825	+		DZA65_RS11725	0.68	-0.0
2,502,846	+		DZA65_RS11725	0.70	-0.4
2,502,847	-		DZA65_RS11725	0.70	-0.2
2,502,849	+		DZA65_RS11725	0.70	-1.1
2,502,869	-		DZA65_RS11725	0.71	+0.8
2,502,898	-		DZA65_RS11725	0.73	-0.5
2,502,948	+		DZA65_RS11725	0.76	+0.1
2,502,949	-		DZA65_RS11725	0.76	-0.5
2,502,949	-		DZA65_RS11725	0.76	-0.5
2,502,949	-		DZA65_RS11725	0.76	-0.2
2,502,949	-		DZA65_RS11725	0.76	+0.4
2,502,949	-		DZA65_RS11725	0.76	-1.1
2,502,949	-		DZA65_RS11725	0.76	+0.3
2,502,949	-		DZA65_RS11725	0.76	-1.4
2,502,950	+		DZA65_RS11725	0.76	-0.3
2,502,950	+		DZA65_RS11725	0.76	+1.0
2,502,950	+		DZA65_RS11725	0.76	+0.9
2,502,950	+		DZA65_RS11725	0.76	+0.3
2,502,951	-		DZA65_RS11725	0.76	+0.8
2,502,958	+		DZA65_RS11725	0.77	-2.9
2,502,958	+		DZA65_RS11725	0.77	+0.3
2,502,958	+		DZA65_RS11725	0.77	-0.9
2,502,959	-		DZA65_RS11725	0.77	-1.5
2,503,075	-		DZA65_RS11725	0.84	-0.1
2,503,075	-		DZA65_RS11725	0.84	-0.2
2,503,152	+		DZA65_RS11725	0.88	+2.2
2,503,153	-		DZA65_RS11725	0.88	+0.3
2,503,153	-		DZA65_RS11725	0.88	+0.8
2,503,156	+		DZA65_RS11725	0.89	-0.3
2,503,157	-		DZA65_RS11725	0.89	-1.3
2,503,215	-				-0.7
2,503,215	-				+0.2
2,503,255	-				+0.7
2,503,255	-				+2.1
2,503,255	-				+0.0
2,503,255	-				+0.3
2,503,295	+				-0.3
2,503,368	-				-1.0
2,503,373	-				+1.5
2,503,373	-				-0.6
2,503,414	+				-0.1
2,503,414	+				-1.4
2,503,415	-				-0.7
2,503,416	+				-0.4
2,503,427	-				-0.3
2,503,428	+				+0.3
2,503,428	+				-0.0
2,503,429	-				+1.1
2,503,430	+				+0.7
2,503,430	+				-1.0
2,503,430	+				-1.0
2,503,430	+				+0.9
2,503,431	-				-1.7
2,503,434	-				+0.7
2,503,449	+				+0.1
2,503,465	-				+1.2
2,503,478	+		DZA65_RS11730	0.11	+1.1
2,503,496	-		DZA65_RS11730	0.13	-2.7
2,503,503	-		DZA65_RS11730	0.13	-0.7
2,503,503	-		DZA65_RS11730	0.13	+1.0
2,503,551	+		DZA65_RS11730	0.19	-1.4
2,503,552	-		DZA65_RS11730	0.19	-1.3
2,503,597	+		DZA65_RS11730	0.24	+1.9
2,503,597	+		DZA65_RS11730	0.24	-0.7
2,503,597	+		DZA65_RS11730	0.24	-1.7
2,503,597	+		DZA65_RS11730	0.24	-1.6
2,503,597	+		DZA65_RS11730	0.24	-0.3
2,503,598	-		DZA65_RS11730	0.24	-0.5
2,503,598	-		DZA65_RS11730	0.24	+1.0
2,503,598	-		DZA65_RS11730	0.24	-0.2
2,503,598	-		DZA65_RS11730	0.24	-1.2
2,503,607	+		DZA65_RS11730	0.25	-0.9
2,503,699	+		DZA65_RS11730	0.35	+0.5
2,503,699	+		DZA65_RS11730	0.35	-0.3
2,503,699	+		DZA65_RS11730	0.35	-0.3
2,503,699	+		DZA65_RS11730	0.35	+0.9
2,503,699	+		DZA65_RS11730	0.35	+0.5
2,503,699	+		DZA65_RS11730	0.35	+1.1
2,503,700	-		DZA65_RS11730	0.35	-0.4
2,503,700	-		DZA65_RS11730	0.35	+1.1
2,503,700	-		DZA65_RS11730	0.35	-0.5
2,503,700	-		DZA65_RS11730	0.35	-1.3
2,503,700	-				-1.3
2,503,700	-		DZA65_RS11730	0.35	-0.9
2,503,723	-		DZA65_RS11730	0.38	-0.2
2,503,727	+		DZA65_RS11730	0.38	-0.3
2,503,727	+		DZA65_RS11730	0.38	-2.9
2,503,727	+		DZA65_RS11730	0.38	+1.3
2,503,727	+				-0.3
2,503,728	-		DZA65_RS11730	0.39	+1.2
2,503,728	-		DZA65_RS11730	0.39	+3.1
2,503,728	-		DZA65_RS11730	0.39	-0.3
2,503,731	+		DZA65_RS11730	0.39	-0.0
2,503,739	+		DZA65_RS11730	0.40	+0.9
2,503,779	+		DZA65_RS11730	0.44	+0.5
2,503,779	+		DZA65_RS11730	0.44	+0.6
2,503,785	+		DZA65_RS11730	0.45	+1.4
2,503,890	+		DZA65_RS11730	0.57	+0.1
2,503,931	-		DZA65_RS11730	0.61	-2.5
2,504,034	+		DZA65_RS11730	0.73	-0.8
2,504,035	-		DZA65_RS11730	0.73	+0.7
2,504,035	-		DZA65_RS11730	0.73	-1.3
2,504,065	+		DZA65_RS11730	0.76	-0.2
2,504,066	-		DZA65_RS11730	0.77	+1.3
2,504,095	+				-1.0
2,504,096	-		DZA65_RS11730	0.80	-1.4
2,504,101	+		DZA65_RS11730	0.80	-0.8
2,504,101	+		DZA65_RS11730	0.80	-0.9
2,504,101	+		DZA65_RS11730	0.80	-1.7
2,504,102	-		DZA65_RS11730	0.81	+0.3
2,504,102	-		DZA65_RS11730	0.81	+0.5
2,504,102	-		DZA65_RS11730	0.81	+1.8
2,504,102	-		DZA65_RS11730	0.81	+1.0
2,504,102	-		DZA65_RS11730	0.81	+1.6
2,504,102	-		DZA65_RS11730	0.81	-0.7
2,504,116	+		DZA65_RS11730	0.82	+0.2
2,504,116	+		DZA65_RS11730	0.82	-0.6
2,504,116	+		DZA65_RS11730	0.82	+2.2
2,504,116	+		DZA65_RS11730	0.82	-0.3
2,504,116	+		DZA65_RS11730	0.82	+0.9
2,504,116	+		DZA65_RS11730	0.82	-1.1
2,504,116	+		DZA65_RS11730	0.82	-0.3
2,504,116	+		DZA65_RS11730	0.82	-1.8
2,504,116	-		DZA65_RS11730	0.82	-1.1
2,504,117	-		DZA65_RS11730	0.82	+0.4
2,504,117	-		DZA65_RS11730	0.82	-0.3
2,504,117	-		DZA65_RS11730	0.82	+0.1
2,504,117	-		DZA65_RS11730	0.82	+1.0
2,504,117	-		DZA65_RS11730	0.82	+1.0
2,504,117	-		DZA65_RS11730	0.82	+0.2
2,504,117	-		DZA65_RS11730	0.82	+1.9
2,504,118	+		DZA65_RS11730	0.82	+2.8
2,504,118	+		DZA65_RS11730	0.82	+1.3
2,504,118	+		DZA65_RS11730	0.82	-0.9
2,504,118	+		DZA65_RS11730	0.82	-0.8
2,504,118	+		DZA65_RS11730	0.82	-0.9
2,504,118	+		DZA65_RS11730	0.82	+2.2
2,504,118	+		DZA65_RS11730	0.82	-0.2
2,504,118	+		DZA65_RS11730	0.82	-0.0
2,504,119	-		DZA65_RS11730	0.82	+0.3
2,504,119	-		DZA65_RS11730	0.82	-0.7
2,504,119	-		DZA65_RS11730	0.82	+1.2
2,504,119	-		DZA65_RS11730	0.82	-0.2
2,504,122	+		DZA65_RS11730	0.83	-0.1
2,504,122	+				+0.3
2,504,122	+		DZA65_RS11730	0.83	+0.3
2,504,122	+		DZA65_RS11730	0.83	-0.1
2,504,122	+		DZA65_RS11730	0.83	+0.3
2,504,122	+		DZA65_RS11730	0.83	+0.9
2,504,123	-		DZA65_RS11730	0.83	-0.0
2,504,123	-		DZA65_RS11730	0.83	+0.6
2,504,123	-		DZA65_RS11730	0.83	-2.0
2,504,140	+		DZA65_RS11730	0.85	+0.9
2,504,140	+		DZA65_RS11730	0.85	-0.9
2,504,208	+				-0.7
2,504,208	+				+0.4
2,504,227	-				+2.2
2,504,227	-				-0.4
2,504,230	+				+0.9
2,504,231	-				-0.9
2,504,242	+				+0.5
2,504,357	-				-1.0
2,504,357	-				+2.3
2,504,357	-				-0.7
2,504,357	-				-0.7
2,504,363	+		DZA65_RS11735	0.11	-0.7
2,504,364	-		DZA65_RS11735	0.11	+1.0
2,504,364	-		DZA65_RS11735	0.11	+0.8
2,504,373	+		DZA65_RS11735	0.12	-1.2
2,504,374	-		DZA65_RS11735	0.12	-0.8
2,504,399	+		DZA65_RS11735	0.15	-0.9
2,504,497	+		DZA65_RS11735	0.25	-0.2
2,504,525	+		DZA65_RS11735	0.29	+1.2
2,504,526	-		DZA65_RS11735	0.29	+1.1
2,504,526	-		DZA65_RS11735	0.29	+0.8
2,504,526	-		DZA65_RS11735	0.29	-1.5
2,504,540	+		DZA65_RS11735	0.30	-0.4
2,504,540	+		DZA65_RS11735	0.30	+0.3
2,504,540	+		DZA65_RS11735	0.30	+0.4
2,504,541	-		DZA65_RS11735	0.30	-0.0
2,504,541	-		DZA65_RS11735	0.30	-0.1
2,504,541	-		DZA65_RS11735	0.30	-2.9
2,504,551	+		DZA65_RS11735	0.31	-0.5
2,504,561	+		DZA65_RS11735	0.33	-0.5
2,504,561	+		DZA65_RS11735	0.33	-0.0
2,504,561	+		DZA65_RS11735	0.33	-1.3
2,504,561	+		DZA65_RS11735	0.33	+1.2
2,504,561	+		DZA65_RS11735	0.33	-0.5
2,504,562	-		DZA65_RS11735	0.33	-0.5
2,504,562	-		DZA65_RS11735	0.33	+0.1
2,504,562	-		DZA65_RS11735	0.33	+0.6
2,504,562	-		DZA65_RS11735	0.33	+0.8
2,504,562	-		DZA65_RS11735	0.33	+1.3
2,504,562	-		DZA65_RS11735	0.33	-2.9
2,504,590	+		DZA65_RS11735	0.36	-0.9
2,504,590	+		DZA65_RS11735	0.36	-0.2
2,504,591	-		DZA65_RS11735	0.36	+0.5
2,504,613	-		DZA65_RS11735	0.38	-0.1
2,504,711	+		DZA65_RS11735	0.49	-0.7
2,504,711	+		DZA65_RS11735	0.49	+0.9
2,504,711	+		DZA65_RS11735	0.49	-0.5
2,504,712	-		DZA65_RS11735	0.49	+0.3
2,504,747	+		DZA65_RS11735	0.53	-0.7
2,504,747	+		DZA65_RS11735	0.53	-0.4
2,504,747	+		DZA65_RS11735	0.53	+1.5
2,504,747	+		DZA65_RS11735	0.53	-1.1
2,504,748	-		DZA65_RS11735	0.53	+0.9
2,504,748	-		DZA65_RS11735	0.53	-0.4
2,504,748	-		DZA65_RS11735	0.53	-0.3
2,504,759	+		DZA65_RS11735	0.54	-2.0
2,504,759	+		DZA65_RS11735	0.54	+1.3
2,504,759	+		DZA65_RS11735	0.54	-0.7
2,504,760	-		DZA65_RS11735	0.55	-0.0
2,504,760	-		DZA65_RS11735	0.55	-0.8
2,504,760	-		DZA65_RS11735	0.55	+0.7
2,504,760	-		DZA65_RS11735	0.55	-0.4
2,504,760	-		DZA65_RS11735	0.55	+0.0
2,504,760	-		DZA65_RS11735	0.55	-0.2
2,504,760	-		DZA65_RS11735	0.55	-0.7
2,504,760	-		DZA65_RS11735	0.55	-0.7
2,504,760	-		DZA65_RS11735	0.55	+0.4
2,504,888	+		DZA65_RS11735	0.69	-1.5
2,504,888	+		DZA65_RS11735	0.69	+0.5
2,504,889	-		DZA65_RS11735	0.69	+0.3
2,504,889	-		DZA65_RS11735	0.69	-0.0
2,505,003	-		DZA65_RS11735	0.82	-2.3
2,505,082	+				-0.4
2,505,083	-				-0.8
2,505,083	-				+2.9
2,505,089	-				+0.3
2,505,089	-				+0.0
2,505,100	+				+0.3
2,505,100	+				+0.4
2,505,100	+				+2.2
2,505,100	+				+0.3
2,505,101	-				-1.3
2,505,101	-				+0.2
2,505,101	-				-0.7
2,505,129	-				+1.0
2,505,129	-				-1.0
2,505,160	+				+1.2
2,505,161	-				+1.0
2,505,168	-				-0.4
2,505,168	-				+1.0
2,505,179	+				-0.6
2,505,179	+				+0.6
2,505,179	+				-0.1
2,505,179	+				+0.5
2,505,179	+				+0.2
2,505,180	-				-1.5
2,505,180	-				+0.7
2,505,180	-				-1.7
2,505,220	-				+0.7