Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11300

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,401,305	+				+0.3
2,401,305	+				-0.1
2,401,305	+				-0.9
2,401,305	+				-0.8
2,401,305	+				-1.0
2,401,306	-				-2.7
2,401,306	-				+0.1
2,401,306	-				-2.0
2,401,306	-				-0.7
2,401,306	-				-0.1
2,401,306	-				-0.2
2,401,306	-				-0.7
2,401,306	-				+0.3
2,401,306	-				-2.3
2,401,306	-				+0.6
2,401,306	-				-0.1
2,401,306	-				-1.2
2,401,306	-				+0.1
2,401,306	-				+2.6
2,401,306	-				-1.4
2,401,306	-				+0.8
2,401,306	-				+1.3
2,401,306	-				+0.3
2,401,358	-				+0.3
2,401,999	+		DZA65_RS11295	0.87	+0.3
2,402,000	-		DZA65_RS11295	0.87	-1.3
2,402,082	-				+0.9
2,402,095	+				-0.5
2,402,095	+				-2.0
2,402,096	-				-0.3
2,402,133	+				+0.3
2,402,141	+				-0.9
2,402,141	+				-0.0
2,402,141	+				-0.9
2,402,142	-				+0.5
2,402,142	-				+0.5
2,402,142	-				-0.3
2,402,142	-				+0.5
2,402,142	-				+0.3
2,402,142	-				+0.3
2,402,142	-				+0.7
2,402,222	+				+0.2
2,402,222	+				-0.4
2,402,222	+				-0.6
2,402,222	+				-0.7
2,402,452	+		DZA65_RS11300	0.20	+1.4
2,402,453	-		DZA65_RS11300	0.20	+1.1
2,402,453	-		DZA65_RS11300	0.20	+1.0
2,402,453	-		DZA65_RS11300	0.20	+1.4
2,402,453	-		DZA65_RS11300	0.20	-0.2
2,402,517	+		DZA65_RS11300	0.26	-0.5
2,402,517	+		DZA65_RS11300	0.26	-1.3
2,402,517	+		DZA65_RS11300	0.26	-0.0
2,402,517	+		DZA65_RS11300	0.26	-0.5
2,402,518	-		DZA65_RS11300	0.26	-0.3
2,402,518	-		DZA65_RS11300	0.26	+0.3
2,402,593	+		DZA65_RS11300	0.33	+0.5
2,402,594	-		DZA65_RS11300	0.33	+1.2
2,402,703	-		DZA65_RS11300	0.43	-1.3
2,402,703	-		DZA65_RS11300	0.43	-0.1
2,402,703	-		DZA65_RS11300	0.43	+0.3
2,402,730	+		DZA65_RS11300	0.45	-0.3
2,402,731	-		DZA65_RS11300	0.45	-0.1
2,402,803	+		DZA65_RS11300	0.52	-2.7
2,402,896	-		DZA65_RS11300	0.61	+0.5
2,402,896	-		DZA65_RS11300	0.61	-1.3
2,402,935	-		DZA65_RS11300	0.64	-1.1
2,402,957	+		DZA65_RS11300	0.66	-1.9
2,402,957	+		DZA65_RS11300	0.66	-0.3
2,402,957	+		DZA65_RS11300	0.66	+0.6
2,402,957	+		DZA65_RS11300	0.66	+0.0
2,402,957	+		DZA65_RS11300	0.66	-2.0
2,402,957	+		DZA65_RS11300	0.66	+0.7
2,402,957	+		DZA65_RS11300	0.66	+0.3
2,402,958	-		DZA65_RS11300	0.66	+0.8
2,402,958	-		DZA65_RS11300	0.66	-0.5
2,402,964	+		DZA65_RS11300	0.67	+1.0
2,402,965	-		DZA65_RS11300	0.67	+0.0
2,403,061	+		DZA65_RS11300	0.76	-1.0
2,403,062	-		DZA65_RS11300	0.76	+1.1
2,403,062	-		DZA65_RS11300	0.76	-0.3
2,403,202	-		DZA65_RS11300	0.89	-0.1
2,403,204	+		DZA65_RS11300	0.89	-2.2
2,403,204	+		DZA65_RS11300	0.89	+1.9
2,403,204	+		DZA65_RS11300	0.89	+1.0
2,403,204	+		DZA65_RS11300	0.89	+0.6
2,403,204	+		DZA65_RS11300	0.89	+0.6
2,403,205	-		DZA65_RS11300	0.89	+1.3
2,403,205	-		DZA65_RS11300	0.89	-0.4
2,403,205	-		DZA65_RS11300	0.89	-0.9
2,403,205	-		DZA65_RS11300	0.89	+1.2
2,403,212	-		DZA65_RS11300	0.90	+1.3
2,403,221	-				+0.3
2,403,221	-				+0.0
2,403,394	+				+0.8
2,403,395	-				-0.7
2,403,534	+		DZA65_RS11305	0.15	-0.3
2,403,534	+		DZA65_RS11305	0.15	-0.5
2,403,534	+		DZA65_RS11305	0.15	-3.2
2,403,534	+		DZA65_RS11305	0.15	-0.1
2,403,534	+		DZA65_RS11305	0.15	+0.1
2,403,534	+		DZA65_RS11305	0.15	-0.6
2,403,534	+		DZA65_RS11305	0.15	-0.4
2,403,535	-		DZA65_RS11305	0.15	+2.0
2,403,535	-		DZA65_RS11305	0.15	+0.2
2,403,535	-		DZA65_RS11305	0.15	+0.9
2,403,535	-		DZA65_RS11305	0.15	-0.2
2,403,535	-		DZA65_RS11305	0.15	+0.3
2,403,536	+		DZA65_RS11305	0.15	-0.4
2,403,537	-		DZA65_RS11305	0.15	-0.0
2,403,546	-		DZA65_RS11305	0.16	+0.4
2,403,551	+		DZA65_RS11305	0.17	+1.3
2,403,551	+		DZA65_RS11305	0.17	-0.2
2,403,551	+		DZA65_RS11305	0.17	-0.5
2,403,551	+		DZA65_RS11305	0.17	-0.3
2,403,573	+		DZA65_RS11305	0.20	-0.5
2,403,574	-		DZA65_RS11305	0.20	+0.3
2,403,596	+		DZA65_RS11305	0.22	+0.3
2,403,596	+		DZA65_RS11305	0.22	+1.1
2,403,596	+		DZA65_RS11305	0.22	-1.9
2,403,597	-		DZA65_RS11305	0.23	+1.0
2,403,597	-		DZA65_RS11305	0.23	+2.2
2,403,597	-		DZA65_RS11305	0.23	-1.2
2,403,597	-		DZA65_RS11305	0.23	+0.3
2,403,597	-		DZA65_RS11305	0.23	+0.6
2,403,597	-		DZA65_RS11305	0.23	+0.9
2,403,597	-		DZA65_RS11305	0.23	-0.5
2,403,597	-		DZA65_RS11305	0.23	-0.4
2,403,677	+		DZA65_RS11305	0.32	-2.5
2,403,833	+		DZA65_RS11305	0.51	-0.6
2,403,833	+		DZA65_RS11305	0.51	-1.7
2,403,833	+		DZA65_RS11305	0.51	-1.3
2,403,833	+		DZA65_RS11305	0.51	+0.2
2,403,833	+		DZA65_RS11305	0.51	+1.1
2,403,834	-		DZA65_RS11305	0.51	+1.5
2,403,834	-		DZA65_RS11305	0.51	-1.0
2,403,834	-		DZA65_RS11305	0.51	+0.0
2,403,834	-		DZA65_RS11305	0.51	+0.1
2,403,959	+		DZA65_RS11305	0.66	+1.1
2,403,960	-		DZA65_RS11305	0.66	-1.3
2,404,016	+		DZA65_RS11305	0.73	-0.0
2,404,016	+		DZA65_RS11305	0.73	+1.5
2,404,016	+		DZA65_RS11305	0.73	-2.8
2,404,016	+		DZA65_RS11305	0.73	+0.3
2,404,017	-		DZA65_RS11305	0.73	-0.7
2,404,017	-		DZA65_RS11305	0.73	+0.5
2,404,017	-		DZA65_RS11305	0.73	-0.7
2,404,017	-		DZA65_RS11305	0.73	-0.3
2,404,017	-		DZA65_RS11305	0.73	+1.4
2,404,017	-		DZA65_RS11305	0.73	-0.3
2,404,017	-		DZA65_RS11305	0.73	-0.3
2,404,057	+		DZA65_RS11305	0.78	-0.3
2,404,057	+				-0.4
2,404,141	+		DZA65_RS11305	0.88	-2.0
2,404,142	-		DZA65_RS11305	0.88	-0.1
2,404,142	-		DZA65_RS11305	0.88	+0.3
2,404,142	-		DZA65_RS11305	0.88	-0.9
2,404,153	-		DZA65_RS11305	0.89	-0.0