Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10910

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,308,796	+				-1.0
2,308,797	-				+1.0
2,308,827	+				-0.7
2,308,844	+				+0.1
2,308,844	+				-0.6
2,308,844	+				-1.0
2,308,844	+				+0.3
2,308,844	+				+0.7
2,308,845	-				+0.8
2,308,845	-				-0.3
2,308,845	-				-0.0
2,308,849	+				-0.4
2,308,849	+				+0.2
2,308,850	-				-0.0
2,308,850	-				-0.0
2,308,853	-				+0.3
2,308,853	-				+0.3
2,308,951	+				-0.6
2,308,951	+				-0.7
2,308,951	+				-2.3
2,308,951	+				-1.7
2,308,951	+				+2.3
2,308,951	+				-2.0
2,308,952	-				-0.7
2,308,952	-				-2.0
2,308,952	-				-1.7
2,308,952	-				-0.6
2,308,952	-				-2.3
2,308,952	-				-2.2
2,308,953	+				-0.1
2,308,953	+				+2.1
2,308,953	+				+0.3
2,308,953	+				-0.7
2,308,953	+				-1.7
2,308,953	+				-0.8
2,308,953	+				-0.1
2,308,953	+				+0.4
2,308,953	+				-0.2
2,308,953	+				-0.5
2,308,954	-				-2.7
2,308,954	-				+0.3
2,308,954	-				-1.7
2,308,954	-				-0.3
2,308,954	-				-2.5
2,308,954	-				-2.0
2,308,954	-				-0.4
2,308,954	-				-2.8
2,308,954	-				-1.8
2,308,957	+				+0.6
2,308,958	-				-3.4
2,308,958	-				-1.7
2,308,958	-				-1.6
2,309,002	+				-0.1
2,309,002	+				-2.0
2,309,003	-				-1.7
2,309,003	-				+0.3
2,309,062	+		DZA65_RS10905	0.14	-2.5
2,309,063	-		DZA65_RS10905	0.14	-3.2
2,309,063	-		DZA65_RS10905	0.14	-2.7
2,309,063	-		DZA65_RS10905	0.14	-1.7
2,309,065	+		DZA65_RS10905	0.14	-2.0
2,309,065	+		DZA65_RS10905	0.14	-2.0
2,309,066	-		DZA65_RS10905	0.14	-1.5
2,309,066	-		DZA65_RS10905	0.14	-0.7
2,309,066	-		DZA65_RS10905	0.14	-1.7
2,309,066	-		DZA65_RS10905	0.14	-2.0
2,309,066	-		DZA65_RS10905	0.14	+0.9
2,309,066	-		DZA65_RS10905	0.14	-1.5
2,309,282	-		DZA65_RS10905	0.43	-2.3
2,309,282	-		DZA65_RS10905	0.43	-2.7
2,309,299	+		DZA65_RS10905	0.45	-2.5
2,309,300	-		DZA65_RS10905	0.45	-1.7
2,309,396	-		DZA65_RS10905	0.58	-1.7
2,309,518	+		DZA65_RS10905	0.74	-3.0
2,309,584	+		DZA65_RS10905	0.83	-1.3
2,309,623	+		DZA65_RS10905	0.88	-3.0
2,309,623	+		DZA65_RS10905	0.88	-1.9
2,309,624	-		DZA65_RS10905	0.88	-2.7
2,309,624	-		DZA65_RS10905	0.88	-1.9
2,309,624	-		DZA65_RS10905	0.88	-2.9
2,309,624	-				-0.7
2,309,624	-		DZA65_RS10905	0.88	-0.7
2,309,708	+				-0.7
2,309,747	-				-3.5
2,309,776	+				-0.5
2,309,776	+				+0.1
2,309,777	-				+0.6
2,309,777	-				-0.3
2,309,777	-				-1.5
2,309,854	+		DZA65_RS10910	0.17	-0.5
2,309,855	-		DZA65_RS10910	0.17	-0.7
2,309,855	-		DZA65_RS10910	0.17	-2.3
2,309,855	-		DZA65_RS10910	0.17	-1.2
2,309,855	-		DZA65_RS10910	0.17	+0.4
2,309,855	-		DZA65_RS10910	0.17	+0.5
2,309,858	+		DZA65_RS10910	0.18	+0.7
2,309,858	+		DZA65_RS10910	0.18	-0.2
2,309,859	-		DZA65_RS10910	0.18	+1.1
2,309,859	-		DZA65_RS10910	0.18	+1.5
2,309,859	-		DZA65_RS10910	0.18	-3.5
2,309,908	-		DZA65_RS10910	0.30	+0.9
2,309,933	+		DZA65_RS10910	0.36	-0.0
2,309,933	+		DZA65_RS10910	0.36	+1.2
2,309,933	+		DZA65_RS10910	0.36	+0.4
2,309,933	+		DZA65_RS10910	0.36	+0.3
2,309,934	-		DZA65_RS10910	0.36	-0.5
2,309,934	-		DZA65_RS10910	0.36	+1.5
2,309,934	-		DZA65_RS10910	0.36	-0.7
2,309,934	-		DZA65_RS10910	0.36	+0.3
2,309,936	+		DZA65_RS10910	0.37	-0.3
2,309,936	+		DZA65_RS10910	0.37	+1.3
2,309,936	+		DZA65_RS10910	0.37	-1.7
2,309,937	-		DZA65_RS10910	0.37	-1.1
2,309,937	-		DZA65_RS10910	0.37	+0.3
2,309,937	-		DZA65_RS10910	0.37	+0.6
2,309,937	-		DZA65_RS10910	0.37	+0.9
2,309,937	-		DZA65_RS10910	0.37	+0.0
2,309,958	-		DZA65_RS10910	0.42	+1.5
2,309,974	+		DZA65_RS10910	0.46	+0.0
2,309,974	+		DZA65_RS10910	0.46	-0.7
2,309,975	-		DZA65_RS10910	0.46	-0.0
2,310,119	+		DZA65_RS10910	0.80	+0.2
2,310,183	+				+0.2
2,310,183	+				+0.2
2,310,183	+				-0.5
2,310,183	+				+0.3
2,310,183	+				+1.4
2,310,183	+				+0.8
2,310,183	+				-1.4
2,310,184	-				-1.7
2,310,184	-				+0.3
2,310,184	-				-0.4
2,310,184	-				+0.8
2,310,204	-				+0.3
2,310,256	+				+0.4
2,310,256	+				+0.7
2,310,256	+				-1.8
2,310,312	-		DZA65_RS10915	0.10	+1.1
2,310,312	-		DZA65_RS10915	0.10	+0.1
2,310,312	-		DZA65_RS10915	0.10	-0.7
2,310,328	-		DZA65_RS10915	0.13	-0.7
2,310,332	+		DZA65_RS10915	0.14	-1.7
2,310,332	+		DZA65_RS10915	0.14	-2.3
2,310,333	-		DZA65_RS10915	0.14	-2.0
2,310,407	+		DZA65_RS10915	0.27	-2.5
2,310,409	+		DZA65_RS10915	0.27	-1.3
2,310,569	+		DZA65_RS10915	0.56	-1.2
2,310,569	+		DZA65_RS10915	0.56	-1.5
2,310,575	+		DZA65_RS10915	0.57	-1.3
2,310,616	-				-0.7
2,310,689	+		DZA65_RS10915	0.77	+0.1
2,310,690	-		DZA65_RS10915	0.78	-3.2
2,310,764	+				-2.3
2,310,764	+				-2.7
2,310,765	-				-0.7
2,310,766	+				-4.1
2,310,893	-				+1.7
2,310,923	+				+0.6
2,310,947	-				+1.2
2,310,951	+				+2.3
2,310,951	+				+1.2
2,311,029	+				+1.3
2,311,029	+				+0.3
2,311,029	+				-0.5
2,311,029	+				-1.2
2,311,030	-				+0.9
2,311,030	-				+1.3
2,311,030	-				-0.7
2,311,040	+				-0.3
2,311,040	+				-2.7
2,311,040	+				+0.5
2,311,040	+				+0.8
2,311,040	+				+2.2
2,311,040	+				-2.5
2,311,041	-				-0.2
2,311,041	-				-1.1
2,311,044	+				+1.1
2,311,044	+				+1.8
2,311,044	+				+0.1
2,311,045	-				-1.3
2,311,045	-				-0.1
2,311,045	-				-0.4
2,311,045	-				+0.9
2,311,045	-				-1.7
2,311,045	-				+0.1
2,311,045	-				+1.3
2,311,045	-				+0.7
2,311,045	-				+0.2
2,311,045	-				-0.1