Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10645

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,256,398	-		DZA65_RS10640	0.12	-0.2
2,256,522	-		DZA65_RS10640	0.23	+1.3
2,256,547	-		DZA65_RS10640	0.25	-0.9
2,256,644	+		DZA65_RS10640	0.34	-0.3
2,256,645	-		DZA65_RS10640	0.34	-0.3
2,256,706	+		DZA65_RS10640	0.40	-0.6
2,256,707	-		DZA65_RS10640	0.40	-1.0
2,256,707	-		DZA65_RS10640	0.40	-0.6
2,256,707	-		DZA65_RS10640	0.40	-0.2
2,256,707	-		DZA65_RS10640	0.40	+1.3
2,256,756	+		DZA65_RS10640	0.45	-0.8
2,256,756	+		DZA65_RS10640	0.45	-1.7
2,256,756	+		DZA65_RS10640	0.45	-0.6
2,256,757	-		DZA65_RS10640	0.45	-0.9
2,256,757	-		DZA65_RS10640	0.45	+0.5
2,256,757	-		DZA65_RS10640	0.45	+1.5
2,256,757	-		DZA65_RS10640	0.45	+0.1
2,256,827	+		DZA65_RS10640	0.51	-1.5
2,256,828	-		DZA65_RS10640	0.51	-0.6
2,256,855	+		DZA65_RS10640	0.54	-0.1
2,256,993	+		DZA65_RS10640	0.66	-0.1
2,256,994	-		DZA65_RS10640	0.67	+1.2
2,256,994	-		DZA65_RS10640	0.67	-0.4
2,257,042	+		DZA65_RS10640	0.71	-1.2
2,257,042	+		DZA65_RS10640	0.71	-0.7
2,257,042	+		DZA65_RS10640	0.71	-2.7
2,257,042	+		DZA65_RS10640	0.71	+1.5
2,257,042	+		DZA65_RS10640	0.71	-0.1
2,257,043	-		DZA65_RS10640	0.71	-0.3
2,257,043	-		DZA65_RS10640	0.71	+1.6
2,257,161	+		DZA65_RS10640	0.82	-2.3
2,257,182	+		DZA65_RS10640	0.84	+0.7
2,257,183	-		DZA65_RS10640	0.84	-1.7
2,257,293	+				+1.3
2,257,293	+				-0.6
2,257,294	-				-0.7
2,257,294	-				+0.3
2,257,294	-				-1.1
2,257,325	+				+0.9
2,257,325	+				+0.2
2,257,326	-				+2.1
2,257,326	-				+1.1
2,257,445	+				-0.5
2,257,445	+				-0.7
2,257,445	+				+1.3
2,257,445	+				+0.7
2,257,445	+				+0.3
2,257,446	-				-0.5
2,257,446	-				-1.0
2,257,471	+				+0.5
2,257,472	-				-0.0
2,257,472	-				-0.2
2,257,567	+		DZA65_RS10645	0.17	-1.3
2,257,568	-		DZA65_RS10645	0.17	+0.9
2,257,680	-		DZA65_RS10645	0.27	-2.9
2,257,680	-		DZA65_RS10645	0.27	-1.5
2,257,716	+		DZA65_RS10645	0.30	-0.6
2,257,716	+		DZA65_RS10645	0.30	-1.5
2,257,717	-		DZA65_RS10645	0.30	+1.9
2,257,717	-		DZA65_RS10645	0.30	+0.9
2,257,717	-		DZA65_RS10645	0.30	-2.5
2,257,728	-		DZA65_RS10645	0.31	-1.7
2,257,843	+		DZA65_RS10645	0.41	+1.3
2,257,918	+		DZA65_RS10645	0.48	+0.1
2,257,963	+		DZA65_RS10645	0.52	+1.5
2,257,963	+		DZA65_RS10645	0.52	-0.4
2,258,000	+				+0.3
2,258,106	+		DZA65_RS10645	0.64	+0.3
2,258,106	+		DZA65_RS10645	0.64	-0.9
2,258,106	+		DZA65_RS10645	0.64	+0.9
2,258,107	-		DZA65_RS10645	0.65	+0.1
2,258,107	-		DZA65_RS10645	0.65	+0.0
2,258,107	-		DZA65_RS10645	0.65	+0.1
2,258,107	-		DZA65_RS10645	0.65	+0.7
2,258,120	-		DZA65_RS10645	0.66	-0.6
2,258,164	-		DZA65_RS10645	0.70	-0.8
2,258,176	-		DZA65_RS10645	0.71	+0.6
2,258,176	-		DZA65_RS10645	0.71	+0.3
2,258,195	-		DZA65_RS10645	0.72	-0.1
2,258,207	+		DZA65_RS10645	0.73	+0.9
2,258,207	+		DZA65_RS10645	0.73	+0.7
2,258,207	+		DZA65_RS10645	0.73	-1.8
2,258,207	+		DZA65_RS10645	0.73	-1.4
2,258,208	-		DZA65_RS10645	0.74	-2.4
2,258,208	-		DZA65_RS10645	0.74	-0.1
2,258,326	+		DZA65_RS10645	0.84	+0.6
2,258,326	+		DZA65_RS10645	0.84	-0.7
2,258,326	+		DZA65_RS10645	0.84	-0.8
2,258,327	-		DZA65_RS10645	0.84	+0.3
2,258,327	-		DZA65_RS10645	0.84	-1.6
2,258,328	+		DZA65_RS10645	0.84	-0.7
2,258,328	+		DZA65_RS10645	0.84	+0.1
2,258,328	+		DZA65_RS10645	0.84	+2.7
2,258,328	+				-0.7
2,258,329	-		DZA65_RS10645	0.84	-0.2
2,258,329	-		DZA65_RS10645	0.84	-0.7
2,258,329	-		DZA65_RS10645	0.84	-0.7
2,258,365	+		DZA65_RS10645	0.87	+0.5
2,258,381	+		DZA65_RS10645	0.89	-0.5
2,258,381	+		DZA65_RS10645	0.89	-2.2
2,258,409	+				-0.5
2,258,409	+				+0.8
2,258,410	-				+0.3
2,258,486	+				+1.3
2,258,487	-				+2.0
2,258,487	-				-1.9
2,258,524	-				+0.6
2,258,524	-				+0.3
2,258,524	-				-0.8
2,258,609	-				+0.2
2,258,609	-				-1.7
2,258,612	+				-1.2
2,258,612	+				-0.7
2,258,612	+				+0.1
2,258,612	+				+0.0
2,258,613	-				+1.0
2,258,613	-				-0.3
2,258,621	+				+1.0
2,258,621	+				-0.0
2,258,622	-				-0.3
2,258,622	-				+1.0
2,258,622	-				+0.6
2,258,627	+				-1.4
2,258,628	-				+1.4
2,258,634	+				-1.3
2,258,634	+				-0.6
2,258,634	+				-1.5
2,258,634	+				-2.3
2,258,634	+				+0.2
2,258,635	-				-0.4
2,258,635	-				-1.9
2,258,635	-				+0.0
2,258,635	-				-0.6
2,258,635	-				-0.5
2,258,651	+				+0.7
2,258,651	+				-0.8
2,258,652	-				+0.7
2,258,652	-				+0.0
2,258,655	+				+0.6
2,258,655	+				-1.0
2,258,655	+				-0.5
2,258,655	+				-0.1
2,258,655	+				-0.7
2,258,655	+				-2.3
2,258,655	+				-0.4
2,258,655	+				-0.9
2,258,655	+				+0.3
2,258,655	-				-0.2
2,258,656	-				+0.8
2,258,656	-				+1.3
2,258,656	-				+0.3
2,258,784	-				-0.2
2,258,802	+				+2.6
2,258,831	+				+1.0
2,258,832	-				-1.0
2,258,870	+				+0.0
2,258,871	-				-1.0
2,258,888	-				-1.6
2,258,894	+				-0.7
2,258,895	-				+1.2
2,258,904	+				+0.1
2,258,921	+				-1.9
2,258,921	+				+1.6
2,258,922	-				+0.4
2,258,951	+				+1.3
2,258,952	-				-0.1
2,259,008	-				+0.7
2,259,073	+				-2.2
2,259,074	-				+1.0
2,259,074	-				+1.3
2,259,074	-				+0.3
2,259,074	-				-1.0
2,259,097	+				-1.1
2,259,097	+				-1.9
2,259,099	+				+0.8
2,259,099	+				+0.4
2,259,099	+				+2.6
2,259,100	-				-0.5
2,259,100	-				+0.4
2,259,100	-				-1.9
2,259,100	-				-0.1
2,259,100	-				+1.6
2,259,151	+				+2.0
2,259,151	+				+1.5
2,259,353	+				+0.2
2,259,354	-				+0.4
2,259,354	-				-0.1
2,259,354	-				-1.2
2,259,363	-				-0.4
2,259,364	+				+1.4
2,259,365	-				-0.6
2,259,365	-				-1.3
2,259,377	+				+0.4
2,259,378	-				+0.8
2,259,383	+				-1.3
2,259,383	+				+1.0
2,259,384	-				+0.4
2,259,406	-				-0.8
2,259,419	+				-0.3
2,259,478	-				-0.5
2,259,478	-				-1.2
2,259,478	-				-1.6
2,259,478	-				-0.0
2,259,478	-				-2.2
2,259,478	-				+0.6
2,259,478	-				-2.0
2,259,483	+				-0.5
2,259,484	-				-1.0