Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10635

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,254,297	+		DZA65_RS10630	0.22	-2.0
2,254,297	+		DZA65_RS10630	0.22	-0.6
2,254,297	+		DZA65_RS10630	0.22	+0.4
2,254,297	+		DZA65_RS10630	0.22	-0.2
2,254,297	+		DZA65_RS10630	0.22	+0.9
2,254,297	+		DZA65_RS10630	0.22	-1.3
2,254,297	+		DZA65_RS10630	0.22	+0.6
2,254,297	+		DZA65_RS10630	0.22	+0.5
2,254,297	+		DZA65_RS10630	0.22	+0.8
2,254,298	-				+1.3
2,254,298	-		DZA65_RS10630	0.22	-0.6
2,254,493	+		DZA65_RS10630	0.39	+1.0
2,254,642	+		DZA65_RS10630	0.52	-0.6
2,254,642	+		DZA65_RS10630	0.52	+0.3
2,254,642	+		DZA65_RS10630	0.52	-0.3
2,254,642	+		DZA65_RS10630	0.52	+0.2
2,254,642	+		DZA65_RS10630	0.52	-0.4
2,254,642	+		DZA65_RS10630	0.52	+0.3
2,254,642	+		DZA65_RS10630	0.52	-0.9
2,254,642	+		DZA65_RS10630	0.52	+0.6
2,254,642	+		DZA65_RS10630	0.52	+0.7
2,254,642	+				-1.3
2,254,642	+		DZA65_RS10630	0.52	+0.4
2,254,642	+		DZA65_RS10630	0.52	+0.6
2,254,642	+		DZA65_RS10630	0.52	+0.3
2,254,642	+		DZA65_RS10630	0.52	-0.2
2,254,643	-		DZA65_RS10630	0.52	+0.3
2,254,643	-		DZA65_RS10630	0.52	-2.3
2,254,643	-		DZA65_RS10630	0.52	-0.0
2,254,643	-		DZA65_RS10630	0.52	-0.3
2,254,643	-		DZA65_RS10630	0.52	+1.3
2,254,643	-		DZA65_RS10630	0.52	-0.9
2,254,643	-		DZA65_RS10630	0.52	-0.4
2,254,643	-		DZA65_RS10630	0.52	-0.2
2,254,643	-		DZA65_RS10630	0.52	-0.3
2,254,643	-		DZA65_RS10630	0.52	+2.3
2,254,644	+		DZA65_RS10630	0.52	+0.1
2,254,736	+		DZA65_RS10630	0.60	-0.9
2,254,736	+		DZA65_RS10630	0.60	-0.7
2,254,880	-		DZA65_RS10630	0.73	+0.5
2,254,949	+		DZA65_RS10630	0.79	+1.0
2,254,949	+		DZA65_RS10630	0.79	-1.0
2,254,949	+		DZA65_RS10630	0.79	-0.7
2,254,950	-		DZA65_RS10630	0.79	-1.5
2,254,953	+		DZA65_RS10630	0.79	-0.7
2,254,953	+		DZA65_RS10630	0.79	+0.9
2,254,953	+		DZA65_RS10630	0.79	-0.0
2,254,953	+		DZA65_RS10630	0.79	-0.2
2,254,953	+		DZA65_RS10630	0.79	+0.9
2,254,953	+		DZA65_RS10630	0.79	-0.4
2,254,953	+		DZA65_RS10630	0.79	-0.1
2,254,953	+		DZA65_RS10630	0.79	+0.7
2,254,953	+		DZA65_RS10630	0.79	-0.4
2,254,953	+		DZA65_RS10630	0.79	-0.8
2,254,953	+		DZA65_RS10630	0.79	-0.5
2,254,953	+		DZA65_RS10630	0.79	-0.2
2,254,953	+		DZA65_RS10630	0.79	-0.1
2,254,954	-		DZA65_RS10630	0.79	+0.1
2,254,954	-		DZA65_RS10630	0.79	+0.9
2,254,954	-		DZA65_RS10630	0.79	-0.9
2,254,954	-		DZA65_RS10630	0.79	+0.6
2,254,954	-		DZA65_RS10630	0.79	-0.6
2,254,954	-		DZA65_RS10630	0.79	-0.1
2,254,954	-		DZA65_RS10630	0.79	-1.6
2,254,954	-				+1.3
2,255,035	-		DZA65_RS10630	0.86	-0.0
2,255,157	+				-1.7
2,255,157	+				-1.7
2,255,157	+				+0.4
2,255,157	+				+0.3
2,255,158	-				-0.4
2,255,183	+				-2.3
2,255,209	-				+0.8
2,255,267	+				-2.4
2,255,267	+				-0.5
2,255,267	+				+0.2
2,255,267	+				-0.2
2,255,268	-				+0.3
2,255,268	-				-0.9
2,255,394	+		DZA65_RS10635	0.19	+0.9
2,255,394	+		DZA65_RS10635	0.19	-0.7
2,255,394	+		DZA65_RS10635	0.19	+0.8
2,255,394	+		DZA65_RS10635	0.19	+1.3
2,255,394	+		DZA65_RS10635	0.19	+0.3
2,255,394	+		DZA65_RS10635	0.19	-1.3
2,255,395	-		DZA65_RS10635	0.19	+0.4
2,255,395	-		DZA65_RS10635	0.19	+0.4
2,255,398	+		DZA65_RS10635	0.19	-0.3
2,255,420	+		DZA65_RS10635	0.21	+1.3
2,255,420	+		DZA65_RS10635	0.21	+0.3
2,255,420	+		DZA65_RS10635	0.21	-0.9
2,255,420	+		DZA65_RS10635	0.21	-0.6
2,255,420	+		DZA65_RS10635	0.21	-2.3
2,255,441	-		DZA65_RS10635	0.23	+2.6
2,255,559	+		DZA65_RS10635	0.34	-0.1
2,255,559	+		DZA65_RS10635	0.34	-0.2
2,255,560	-		DZA65_RS10635	0.34	+0.4
2,255,560	-		DZA65_RS10635	0.34	-0.7
2,255,612	+				+1.3
2,255,612	+		DZA65_RS10635	0.39	-2.0
2,255,612	+		DZA65_RS10635	0.39	-0.3
2,255,612	+		DZA65_RS10635	0.39	+0.5
2,255,612	+		DZA65_RS10635	0.39	+0.3
2,255,612	+		DZA65_RS10635	0.39	+0.5
2,255,613	-				+2.9
2,255,613	-		DZA65_RS10635	0.39	+0.5
2,255,613	-		DZA65_RS10635	0.39	+0.3
2,255,659	+		DZA65_RS10635	0.43	-1.0
2,255,659	+		DZA65_RS10635	0.43	-1.0
2,255,660	-		DZA65_RS10635	0.43	-2.7
2,255,660	-		DZA65_RS10635	0.43	+0.9
2,255,710	-				+2.6
2,255,710	-		DZA65_RS10635	0.48	-2.4
2,255,710	-		DZA65_RS10635	0.48	-0.4
2,255,710	-		DZA65_RS10635	0.48	-1.6
2,255,710	-		DZA65_RS10635	0.48	-1.4
2,255,732	+		DZA65_RS10635	0.50	+1.3
2,255,732	+		DZA65_RS10635	0.50	-1.7
2,255,733	-		DZA65_RS10635	0.50	-1.3
2,255,743	-		DZA65_RS10635	0.51	+0.2
2,255,755	-		DZA65_RS10635	0.52	-0.8
2,255,755	-		DZA65_RS10635	0.52	-0.3
2,255,755	-		DZA65_RS10635	0.52	-0.8
2,255,890	+				+2.3
2,255,945	-		DZA65_RS10635	0.69	+0.5
2,256,009	+		DZA65_RS10635	0.75	-0.0
2,256,009	+		DZA65_RS10635	0.75	-2.2
2,256,009	+		DZA65_RS10635	0.75	-0.1
2,256,009	+		DZA65_RS10635	0.75	+0.2
2,256,009	+		DZA65_RS10635	0.75	+1.5
2,256,009	+		DZA65_RS10635	0.75	-0.2
2,256,010	-		DZA65_RS10635	0.75	+0.1
2,256,010	-		DZA65_RS10635	0.75	-0.7
2,256,010	-		DZA65_RS10635	0.75	-0.9
2,256,010	-		DZA65_RS10635	0.75	-0.0
2,256,013	+		DZA65_RS10635	0.75	-0.3
2,256,013	+		DZA65_RS10635	0.75	-0.3
2,256,013	+		DZA65_RS10635	0.75	-1.0
2,256,014	-		DZA65_RS10635	0.76	-1.6
2,256,014	-		DZA65_RS10635	0.76	-2.0
2,256,014	-				+0.3
2,256,014	-		DZA65_RS10635	0.76	+0.7
2,256,051	+		DZA65_RS10635	0.79	-1.4
2,256,051	+		DZA65_RS10635	0.79	-0.6
2,256,051	+		DZA65_RS10635	0.79	+0.6
2,256,051	+				+0.7
2,256,052	-		DZA65_RS10635	0.79	-0.8
2,256,052	-		DZA65_RS10635	0.79	-0.4
2,256,052	-		DZA65_RS10635	0.79	+0.3
2,256,052	-		DZA65_RS10635	0.79	-0.5
2,256,055	+		DZA65_RS10635	0.79	-0.7
2,256,055	+		DZA65_RS10635	0.79	+0.6
2,256,055	+		DZA65_RS10635	0.79	+0.0
2,256,055	+		DZA65_RS10635	0.79	-0.7
2,256,055	+		DZA65_RS10635	0.79	+1.0
2,256,055	+		DZA65_RS10635	0.79	+0.1
2,256,055	+		DZA65_RS10635	0.79	-1.5
2,256,055	+		DZA65_RS10635	0.79	-1.7
2,256,056	-		DZA65_RS10635	0.79	+0.3
2,256,056	-		DZA65_RS10635	0.79	-1.3
2,256,056	-		DZA65_RS10635	0.79	-1.5
2,256,056	-		DZA65_RS10635	0.79	-0.7
2,256,056	-		DZA65_RS10635	0.79	+0.8
2,256,056	-		DZA65_RS10635	0.79	-0.1
2,256,056	-		DZA65_RS10635	0.79	-1.3
2,256,056	-		DZA65_RS10635	0.79	-0.0
2,256,056	-		DZA65_RS10635	0.79	+0.6
2,256,056	-		DZA65_RS10635	0.79	-0.5
2,256,056	-		DZA65_RS10635	0.79	+0.1
2,256,056	-		DZA65_RS10635	0.79	-0.3
2,256,056	-		DZA65_RS10635	0.79	+0.3
2,256,091	+		DZA65_RS10635	0.83	-0.7
2,256,092	-		DZA65_RS10635	0.83	-0.2
2,256,109	-		DZA65_RS10635	0.84	+1.9
2,256,136	+		DZA65_RS10635	0.87	+0.1
2,256,136	+		DZA65_RS10635	0.87	-0.2
2,256,136	+		DZA65_RS10635	0.87	+0.9
2,256,136	+		DZA65_RS10635	0.87	-1.0
2,256,398	-		DZA65_RS10640	0.12	-0.2
2,256,522	-		DZA65_RS10640	0.23	+1.3
2,256,547	-		DZA65_RS10640	0.25	-0.9
2,256,644	+		DZA65_RS10640	0.34	-0.3
2,256,645	-		DZA65_RS10640	0.34	-0.3
2,256,706	+		DZA65_RS10640	0.40	-0.6
2,256,707	-		DZA65_RS10640	0.40	-1.0
2,256,707	-		DZA65_RS10640	0.40	-0.6
2,256,707	-		DZA65_RS10640	0.40	-0.2
2,256,707	-		DZA65_RS10640	0.40	+1.3
2,256,756	+		DZA65_RS10640	0.45	-0.8
2,256,756	+		DZA65_RS10640	0.45	-1.7
2,256,756	+		DZA65_RS10640	0.45	-0.6
2,256,757	-		DZA65_RS10640	0.45	-0.9
2,256,757	-		DZA65_RS10640	0.45	+0.5
2,256,757	-		DZA65_RS10640	0.45	+1.5
2,256,757	-		DZA65_RS10640	0.45	+0.1
2,256,827	+		DZA65_RS10640	0.51	-1.5
2,256,828	-		DZA65_RS10640	0.51	-0.6
2,256,855	+		DZA65_RS10640	0.54	-0.1
2,256,993	+		DZA65_RS10640	0.66	-0.1
2,256,994	-		DZA65_RS10640	0.67	+1.2
2,256,994	-		DZA65_RS10640	0.67	-0.4
2,257,042	+		DZA65_RS10640	0.71	-1.2
2,257,042	+		DZA65_RS10640	0.71	-0.7
2,257,042	+		DZA65_RS10640	0.71	-2.7
2,257,042	+		DZA65_RS10640	0.71	+1.5
2,257,042	+		DZA65_RS10640	0.71	-0.1
2,257,043	-		DZA65_RS10640	0.71	-0.3
2,257,043	-		DZA65_RS10640	0.71	+1.6
2,257,161	+		DZA65_RS10640	0.82	-2.3
2,257,182	+		DZA65_RS10640	0.84	+0.7
2,257,183	-		DZA65_RS10640	0.84	-1.7