Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10540

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,234,053	-				+0.3
2,234,053	-				+2.0
2,234,055	+				-0.1
2,234,055	+				+0.7
2,234,055	+				+0.7
2,234,056	-				-1.0
2,234,056	-				+1.1
2,234,056	-				-0.3
2,234,056	-				-0.3
2,234,136	-				+2.5
2,234,144	+				-2.3
2,234,150	+				-0.2
2,234,150	+				+1.0
2,234,151	-				-0.9
2,234,166	-				-0.0
2,234,182	+				+0.1
2,234,182	+				+0.3
2,234,183	-				+1.2
2,234,187	-				+0.1
2,234,187	-				+0.5
2,234,187	-				-0.7
2,234,187	-				-1.3
2,234,187	-				+1.8
2,234,187	-				-0.4
2,234,187	-				-0.8
2,234,187	-				-0.9
2,234,195	+				-0.8
2,234,196	-				+0.5
2,234,196	-				+0.7
2,234,196	-				-1.5
2,234,199	+				+0.2
2,234,199	+				-1.9
2,234,199	+				-0.4
2,234,199	+				+0.8
2,234,200	-				-0.9
2,234,200	-				+0.7
2,234,200	-				+0.1
2,234,200	-				+0.5
2,234,200	-				+0.9
2,234,233	+				-1.0
2,234,233	+				-2.3
2,234,233	+				-0.2
2,234,234	-				-1.7
2,234,234	-				+1.3
2,234,234	-				+0.9
2,234,234	-				-0.4
2,234,237	+				+1.8
2,234,250	+				-1.9
2,234,250	+				+0.0
2,234,250	+				-0.0
2,234,250	+				+0.7
2,234,250	+				-1.3
2,234,250	+				-2.5
2,234,250	+				+1.1
2,234,250	+				-1.1
2,234,251	-				+0.3
2,234,251	-				-1.1
2,234,251	-				-0.4
2,234,251	-				+1.0
2,234,251	-				+1.5
2,234,251	-				-1.7
2,234,251	-				+0.8
2,234,251	-				+0.1
2,234,292	+				-0.3
2,234,292	+				+0.5
2,234,293	-				+1.3
2,234,293	-				+0.9
2,234,311	+				-0.9
2,234,311	+				+1.0
2,234,311	+				-1.4
2,234,311	+				+0.2
2,234,311	+				-0.9
2,234,311	+				-2.9
2,234,311	+				+0.8
2,234,311	+				-0.9
2,234,312	-				+0.5
2,234,312	-				-1.9
2,234,312	-				+0.5
2,234,312	-				-0.9
2,234,338	-				+0.3
2,234,338	-				-1.1
2,234,454	+		DZA65_RS10535	0.25	+0.9
2,234,454	+		DZA65_RS10535	0.25	-0.7
2,234,454	+		DZA65_RS10535	0.25	+0.3
2,234,455	-		DZA65_RS10535	0.25	+0.7
2,234,596	-		DZA65_RS10535	0.43	-1.0
2,234,596	-		DZA65_RS10535	0.43	-0.1
2,234,596	-		DZA65_RS10535	0.43	-0.7
2,234,596	-		DZA65_RS10535	0.43	-0.7
2,234,705	+		DZA65_RS10535	0.57	+0.3
2,234,873	+		DZA65_RS10535	0.78	-0.2
2,234,873	+		DZA65_RS10535	0.78	-1.8
2,234,873	+		DZA65_RS10535	0.78	-1.0
2,234,874	-		DZA65_RS10535	0.78	-0.8
2,234,874	-		DZA65_RS10535	0.78	-0.4
2,234,917	+		DZA65_RS10535	0.84	-0.4
2,234,917	+		DZA65_RS10535	0.84	+0.3
2,234,917	+		DZA65_RS10535	0.84	-1.1
2,234,918	-		DZA65_RS10535	0.84	-1.9
2,234,948	+		DZA65_RS10535	0.88	+1.1
2,234,948	+		DZA65_RS10535	0.88	-2.5
2,234,949	-		DZA65_RS10535	0.88	+0.3
2,234,955	+		DZA65_RS10535	0.88	-2.0
2,234,955	+		DZA65_RS10535	0.88	-2.5
2,234,955	+		DZA65_RS10535	0.88	+0.3
2,234,955	+		DZA65_RS10535	0.88	-0.8
2,234,955	+		DZA65_RS10535	0.88	+0.6
2,234,955	+		DZA65_RS10535	0.88	+0.7
2,234,956	-		DZA65_RS10535	0.89	+0.7
2,234,956	-		DZA65_RS10535	0.89	+0.3
2,234,956	-		DZA65_RS10535	0.89	-0.1
2,234,956	-		DZA65_RS10535	0.89	-0.7
2,235,053	+				-0.4
2,235,104	+				-0.3
2,235,104	+				-0.4
2,235,105	-				-1.6
2,235,105	-				+0.3
2,235,105	-				-1.1
2,235,209	+		DZA65_RS10540	0.22	+1.3
2,235,209	+		DZA65_RS10540	0.22	-2.3
2,235,209	+		DZA65_RS10540	0.22	-0.7
2,235,209	+		DZA65_RS10540	0.22	-0.0
2,235,209	+		DZA65_RS10540	0.22	-0.7
2,235,209	+		DZA65_RS10540	0.22	+0.0
2,235,210	-		DZA65_RS10540	0.22	+0.7
2,235,210	-		DZA65_RS10540	0.22	+1.1
2,235,210	-		DZA65_RS10540	0.22	+0.7
2,235,210	-		DZA65_RS10540	0.22	+1.7
2,235,218	+		DZA65_RS10540	0.23	+0.1
2,235,219	-		DZA65_RS10540	0.23	-2.3
2,235,219	-		DZA65_RS10540	0.23	-0.3
2,235,219	-		DZA65_RS10540	0.23	+0.5
2,235,219	-		DZA65_RS10540	0.23	+2.5
2,235,219	-		DZA65_RS10540	0.23	+0.1
2,235,242	+		DZA65_RS10540	0.26	-0.5
2,235,242	+		DZA65_RS10540	0.26	+0.8
2,235,243	-		DZA65_RS10540	0.26	-1.0
2,235,292	+		DZA65_RS10540	0.33	-2.5
2,235,312	-		DZA65_RS10540	0.36	+1.0
2,235,315	+		DZA65_RS10540	0.36	+0.3
2,235,315	+		DZA65_RS10540	0.36	+1.8
2,235,315	+		DZA65_RS10540	0.36	-0.9
2,235,315	+		DZA65_RS10540	0.36	+1.9
2,235,315	+		DZA65_RS10540	0.36	-1.4
2,235,316	-		DZA65_RS10540	0.36	+0.3
2,235,316	-		DZA65_RS10540	0.36	-0.0
2,235,316	-		DZA65_RS10540	0.36	+0.3
2,235,316	-		DZA65_RS10540	0.36	+0.9
2,235,316	-		DZA65_RS10540	0.36	+1.4
2,235,316	-		DZA65_RS10540	0.36	-1.1
2,235,322	+		DZA65_RS10540	0.37	+2.8
2,235,323	-		DZA65_RS10540	0.37	-1.7
2,235,378	+		DZA65_RS10540	0.44	+0.3
2,235,378	+		DZA65_RS10540	0.44	+0.7
2,235,378	+		DZA65_RS10540	0.44	-1.0
2,235,379	-		DZA65_RS10540	0.44	-0.7
2,235,398	+		DZA65_RS10540	0.47	-0.3
2,235,399	-		DZA65_RS10540	0.47	-2.5
2,235,486	+		DZA65_RS10540	0.58	+0.3
2,235,486	+		DZA65_RS10540	0.58	-0.2
2,235,486	+		DZA65_RS10540	0.58	+0.3
2,235,486	+		DZA65_RS10540	0.58	+0.3
2,235,486	+		DZA65_RS10540	0.58	-0.3
2,235,486	+		DZA65_RS10540	0.58	-0.8
2,235,486	+		DZA65_RS10540	0.58	+1.4
2,235,486	+		DZA65_RS10540	0.58	-1.0
2,235,487	-		DZA65_RS10540	0.59	+0.2
2,235,487	-		DZA65_RS10540	0.59	-1.1
2,235,509	+		DZA65_RS10540	0.62	+0.2
2,235,509	+		DZA65_RS10540	0.62	+1.0
2,235,510	-		DZA65_RS10540	0.62	+0.3
2,235,510	-		DZA65_RS10540	0.62	+1.3
2,235,510	-		DZA65_RS10540	0.62	-0.3
2,235,510	-		DZA65_RS10540	0.62	-2.5
2,235,533	+		DZA65_RS10540	0.65	+0.4
2,235,533	+		DZA65_RS10540	0.65	+0.1
2,235,533	+		DZA65_RS10540	0.65	+2.0
2,235,589	+		DZA65_RS10540	0.72	-2.9
2,235,590	-		DZA65_RS10540	0.72	-0.3
2,235,707	+		DZA65_RS10540	0.88	-0.4
2,235,708	-		DZA65_RS10540	0.88	-0.0
2,235,734	+				+0.5
2,235,735	-				-0.8
2,235,735	-				-0.3
2,235,735	-				-0.7
2,235,735	-				-1.0
2,235,735	-				+1.5
2,235,735	-				-1.0
2,235,774	-				-0.3
2,235,800	+				-0.6
2,235,801	-				+0.6
2,235,801	-				-0.0
2,235,801	-				+1.0
2,235,833	+				-1.7
2,235,833	+				+0.9
2,235,836	+				+0.8
2,235,837	-				+0.1
2,235,839	-				-0.3
2,235,896	+				-0.9
2,235,897	-				-0.3
2,235,897	-				+0.3
2,235,897	-				+0.3
2,235,897	-				-0.7
2,235,897	-				+0.7
2,235,897	-				-1.1
2,235,897	-				-0.5
2,235,914	-				+0.8
2,235,931	+				+0.5
2,236,001	+		DZA65_RS10545	0.12	+0.3
2,236,001	+		DZA65_RS10545	0.12	-0.6
2,236,074	+		DZA65_RS10545	0.19	+1.3
2,236,074	+		DZA65_RS10545	0.19	-0.0
2,236,096	+		DZA65_RS10545	0.22	+0.5
2,236,096	+		DZA65_RS10545	0.22	+0.1
2,236,096	+		DZA65_RS10545	0.22	-0.5
2,236,097	-		DZA65_RS10545	0.22	-0.7
2,236,097	-		DZA65_RS10545	0.22	+0.6
2,236,106	+		DZA65_RS10545	0.22	+0.3
2,236,107	-		DZA65_RS10545	0.23	-1.7
2,236,107	-		DZA65_RS10545	0.23	-0.3
2,236,228	+		DZA65_RS10545	0.34	+0.5
2,236,394	+		DZA65_RS10545	0.51	+0.3
2,236,394	+		DZA65_RS10545	0.51	-1.9
2,236,394	+		DZA65_RS10545	0.51	-0.3
2,236,394	+		DZA65_RS10545	0.51	-0.8
2,236,395	-		DZA65_RS10545	0.51	-2.0
2,236,395	-		DZA65_RS10545	0.51	+0.8
2,236,395	-		DZA65_RS10545	0.51	+0.7
2,236,395	-		DZA65_RS10545	0.51	+0.6
2,236,395	-		DZA65_RS10545	0.51	+0.9
2,236,535	+		DZA65_RS10545	0.64	+0.1
2,236,535	+		DZA65_RS10545	0.64	+0.2
2,236,536	-		DZA65_RS10545	0.65	+0.9
2,236,541	+		DZA65_RS10545	0.65	+0.1
2,236,544	+		DZA65_RS10545	0.65	-0.8
2,236,544	+		DZA65_RS10545	0.65	-1.3
2,236,544	+		DZA65_RS10545	0.65	-1.0
2,236,545	-		DZA65_RS10545	0.65	-0.3
2,236,572	+		DZA65_RS10545	0.68	-0.2
2,236,573	-		DZA65_RS10545	0.68	-0.7
2,236,614	+		DZA65_RS10545	0.72	+0.0
2,236,688	-		DZA65_RS10545	0.79	+0.8
2,236,709	+		DZA65_RS10545	0.81	+0.6
2,236,756	+		DZA65_RS10545	0.86	-1.0
2,236,756	+		DZA65_RS10545	0.86	-0.1
2,236,756	+		DZA65_RS10545	0.86	-0.0
2,236,756	+		DZA65_RS10545	0.86	-0.0
2,236,756	+		DZA65_RS10545	0.86	+0.4
2,236,757	-		DZA65_RS10545	0.86	-3.5
2,236,783	+		DZA65_RS10545	0.89	+0.2
2,236,783	+		DZA65_RS10545	0.89	-2.3
2,236,783	+		DZA65_RS10545	0.89	-2.3
2,236,784	-		DZA65_RS10545	0.89	-3.1