Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10465

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,221,415	-				+2.1
2,221,437	+				-0.9
2,221,438	-				-0.0
2,221,438	-				+0.3
2,221,438	-				-0.2
2,221,438	-				-0.4
2,221,608	+		DZA65_RS10460	0.26	-1.3
2,221,608	+		DZA65_RS10460	0.26	-0.2
2,221,609	-		DZA65_RS10460	0.26	-0.7
2,221,609	-		DZA65_RS10460	0.26	+1.0
2,221,668	+		DZA65_RS10460	0.36	+0.8
2,221,686	+		DZA65_RS10460	0.40	-0.6
2,221,687	-		DZA65_RS10460	0.40	-0.9
2,221,698	+		DZA65_RS10460	0.42	-0.9
2,221,698	+		DZA65_RS10460	0.42	-1.3
2,221,809	-		DZA65_RS10460	0.61	+1.2
2,221,832	+		DZA65_RS10460	0.65	-1.3
2,221,832	+		DZA65_RS10460	0.65	+0.4
2,221,833	-		DZA65_RS10460	0.65	+1.2
2,221,833	-		DZA65_RS10460	0.65	+1.1
2,221,833	-		DZA65_RS10460	0.65	-0.3
2,221,833	-		DZA65_RS10460	0.65	+0.1
2,221,833	-		DZA65_RS10460	0.65	-0.4
2,221,833	-		DZA65_RS10460	0.65	+0.3
2,221,833	-		DZA65_RS10460	0.65	-1.7
2,221,833	-		DZA65_RS10460	0.65	-1.0
2,221,887	+		DZA65_RS10460	0.75	-0.4
2,221,899	+		DZA65_RS10460	0.77	-2.3
2,222,029	+				+0.9
2,222,029	+				-0.9
2,222,029	+				+0.7
2,222,030	-				-1.3
2,222,049	+				-1.6
2,222,049	+				-0.2
2,222,050	-				+0.8
2,222,050	-				+2.3
2,222,050	-				-0.2
2,222,050	-				+0.6
2,222,050	-				+1.3
2,222,060	+				+0.2
2,222,061	-				+0.3
2,222,061	-				-2.7
2,222,061	-				+2.2
2,222,061	-				+1.7
2,222,061	-				+0.6
2,222,061	-				+0.3
2,222,062	+				-0.7
2,222,062	+				+0.9
2,222,062	+				-0.9
2,222,062	+				+0.3
2,222,062	+				-2.3
2,222,062	+				-2.0
2,222,063	-				+0.5
2,222,063	-				-0.5
2,222,063	-				-1.3
2,222,063	-				+0.6
2,222,063	-				-1.0
2,222,063	-				-0.2
2,222,070	+				-1.7
2,222,071	-				-0.8
2,222,075	+				-0.4
2,222,075	+				-1.0
2,222,075	+				+0.5
2,222,076	-				-1.5
2,222,076	-				-0.7
2,222,083	+				-0.4
2,222,084	-				-0.7
2,222,084	-				-1.1
2,222,088	+				-0.1
2,222,089	-				-0.1
2,222,107	+				-0.1
2,222,174	-				+0.3
2,222,174	-				+0.4
2,222,174	-				-1.7
2,222,176	+				-1.5
2,222,177	-				+0.3
2,222,200	+				+0.4
2,222,200	+				-1.3
2,222,200	+				-0.1
2,222,201	-				-0.7
2,222,201	-				-0.5
2,222,203	+				+0.1
2,222,203	+				-0.7
2,222,203	+				-0.2
2,222,204	-				-0.2
2,222,204	-				-0.9
2,222,233	+				-0.8
2,222,233	+				-0.9
2,222,233	+				-2.0
2,222,234	-				-1.3
2,222,289	+				-2.8
2,222,289	+				+0.3
2,222,289	+				-0.9
2,222,289	+				-0.4
2,222,289	+				-1.0
2,222,290	-				-0.1
2,222,290	-				-3.3
2,222,290	-				+1.7
2,222,314	+				-0.0
2,222,314	+				-2.8
2,222,314	+				-0.8
2,222,314	+				-0.5
2,222,316	+				+1.0
2,222,316	+				+0.3
2,222,316	+				+1.1
2,222,317	-				-0.1
2,222,317	-				+0.7
2,222,317	-				+0.2
2,222,363	+				-3.1
2,222,414	+		DZA65_RS10465	0.16	-0.5
2,222,415	-		DZA65_RS10465	0.16	+0.4
2,222,505	+		DZA65_RS10465	0.28	+0.6
2,222,518	+		DZA65_RS10465	0.30	-0.0
2,222,518	+		DZA65_RS10465	0.30	-0.3
2,222,518	+		DZA65_RS10465	0.30	-0.1
2,222,518	+		DZA65_RS10465	0.30	+2.2
2,222,518	+		DZA65_RS10465	0.30	+1.1
2,222,519	-		DZA65_RS10465	0.30	-0.7
2,222,519	-		DZA65_RS10465	0.30	+1.9
2,222,519	-		DZA65_RS10465	0.30	+0.8
2,222,589	+		DZA65_RS10465	0.39	-2.7
2,222,590	-		DZA65_RS10465	0.39	+0.2
2,222,590	-				+1.6
2,222,768	+		DZA65_RS10465	0.62	+0.1
2,222,768	+		DZA65_RS10465	0.62	-0.6
2,222,768	+		DZA65_RS10465	0.62	-0.4
2,222,769	-		DZA65_RS10465	0.63	-0.8
2,222,782	-		DZA65_RS10465	0.64	-0.3
2,222,782	-		DZA65_RS10465	0.64	-0.0
2,222,782	-		DZA65_RS10465	0.64	-0.1
2,222,802	+		DZA65_RS10465	0.67	-2.1
2,222,802	+		DZA65_RS10465	0.67	+0.4
2,222,802	+		DZA65_RS10465	0.67	+0.1
2,222,802	+		DZA65_RS10465	0.67	+0.0
2,222,803	-		DZA65_RS10465	0.67	+1.2
2,222,805	+		DZA65_RS10465	0.67	+1.3
2,222,805	+		DZA65_RS10465	0.67	+0.5
2,222,805	+		DZA65_RS10465	0.67	-0.7
2,222,806	-		DZA65_RS10465	0.67	+0.9
2,222,806	-		DZA65_RS10465	0.67	-3.1
2,222,806	-		DZA65_RS10465	0.67	+0.5
2,222,806	-		DZA65_RS10465	0.67	-0.5
2,222,806	-		DZA65_RS10465	0.67	+0.9
2,222,809	-		DZA65_RS10465	0.68	-0.3
2,222,863	-		DZA65_RS10465	0.75	-0.3
2,222,971	+		DZA65_RS10465	0.89	-2.5
2,222,972	-		DZA65_RS10465	0.89	-0.7
2,222,972	-		DZA65_RS10465	0.89	-0.1
2,222,972	-		DZA65_RS10465	0.89	-2.8
2,222,994	-				+0.1
2,223,053	-				-1.3
2,223,123	+				-0.3
2,223,124	-				-0.7
2,223,140	-				-0.5
2,223,182	+				+1.7
2,223,199	+				-0.4
2,223,199	+				-0.1
2,223,199	+				-0.7
2,223,199	+				+1.1
2,223,199	+				+0.9
2,223,199	+				-0.8
2,223,199	+				+1.7
2,223,200	-				-0.7
2,223,200	-				+1.5
2,223,200	-				+0.7
2,223,207	+				-2.3
2,223,208	-				-2.0
2,223,208	-				+0.1
2,223,208	-				-0.2
2,223,224	-				-0.4
2,223,244	-				-0.2
2,223,248	+				-0.4
2,223,248	+				+0.0
2,223,248	+				-2.0
2,223,248	+				+0.9
2,223,248	+				-0.2
2,223,248	+				+0.1
2,223,249	-				+1.0
2,223,249	-				-0.3
2,223,341	-				-1.1
2,223,380	-		DZA65_RS10470	0.13	+0.9
2,223,380	-		DZA65_RS10470	0.13	-1.3
2,223,476	+		DZA65_RS10470	0.45	+1.5
2,223,476	+		DZA65_RS10470	0.45	-0.1
2,223,476	+		DZA65_RS10470	0.45	+0.3
2,223,477	-		DZA65_RS10470	0.46	+0.7
2,223,477	-		DZA65_RS10470	0.46	-0.4
2,223,477	-		DZA65_RS10470	0.46	-0.4
2,223,477	-		DZA65_RS10470	0.46	+0.0
2,223,477	-		DZA65_RS10470	0.46	+1.3
2,223,477	-		DZA65_RS10470	0.46	+1.5
2,223,477	-		DZA65_RS10470	0.46	+1.3
2,223,583	+		DZA65_RS10470	0.81	-1.3
2,223,584	-		DZA65_RS10470	0.82	+0.2
2,223,622	+				-1.0
2,223,622	+				+0.3
2,223,623	-				-1.3
2,223,646	-				-0.7
2,223,649	-				+0.8
2,223,889	+		DZA65_RS10475	0.16	-1.8
2,223,889	+		DZA65_RS10475	0.16	+0.4
2,223,960	-		DZA65_RS10475	0.23	-1.8