Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09350

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,970,155	-				-1.4
1,970,170	-				+0.9
1,970,225	+				+0.2
1,970,251	+				+0.2
1,970,252	-				+1.3
1,970,252	-				+0.7
1,970,252	-				-1.4
1,970,266	+				-1.0
1,970,267	-				+1.0
1,970,267	-				+0.0
1,970,267	-				-1.2
1,970,270	-				+0.1
1,970,270	-				+0.1
1,970,309	+				+0.7
1,970,309	+				+0.0
1,970,309	+				-0.5
1,970,310	-				+0.8
1,970,310	-				-0.5
1,970,318	+				+1.1
1,970,319	-				+0.2
1,970,355	+				-1.2
1,970,355	+				+0.2
1,970,356	-				+0.8
1,970,361	+				+1.2
1,970,362	-				-0.2
1,970,464	+		DZA65_RS09340	0.44	-1.1
1,970,496	+		DZA65_RS09340	0.56	+0.2
1,970,496	+		DZA65_RS09340	0.56	+1.1
1,970,497	-		DZA65_RS09340	0.56	-0.7
1,970,556	+		DZA65_RS09340	0.78	+0.2
1,970,556	+		DZA65_RS09340	0.78	+0.3
1,970,557	-		DZA65_RS09340	0.79	-0.8
1,970,557	-		DZA65_RS09340	0.79	-2.1
1,970,574	+		DZA65_RS09340	0.85	+1.7
1,970,575	-		DZA65_RS09340	0.85	-1.0
1,970,604	+				+0.8
1,970,606	+				-1.5
1,970,606	+				+0.7
1,970,607	-				+0.7
1,970,702	-		DZA65_RS09345	0.33	-0.5
1,970,734	-		DZA65_RS09345	0.46	-0.7
1,970,734	-		DZA65_RS09345	0.46	-0.5
1,970,744	-		DZA65_RS09345	0.50	-0.9
1,970,810	+		DZA65_RS09345	0.77	+0.1
1,970,824	-		DZA65_RS09345	0.83	+0.2
1,970,829	+		DZA65_RS09345	0.85	-1.0
1,970,829	+		DZA65_RS09345	0.85	-0.4
1,970,829	+		DZA65_RS09345	0.85	-0.0
1,970,836	+		DZA65_RS09345	0.88	-0.8
1,970,883	-				-1.5
1,970,931	+				+0.8
1,970,942	+				-0.1
1,970,942	+				-0.5
1,970,942	+				-0.9
1,970,942	+				+0.3
1,970,942	+				+1.9
1,970,942	+				+1.7
1,970,942	+				-0.0
1,970,943	-				-1.7
1,970,943	-				+1.3
1,970,943	-				+0.3
1,970,943	-				-0.7
1,970,943	-				+0.3
1,970,982	+				+0.8
1,970,982	+				-2.1
1,970,986	-				+0.4
1,970,993	+				-1.8
1,970,993	+				-0.1
1,971,086	+				-1.1
1,971,087	-				-0.0
1,971,105	+				-2.0
1,971,187	+				-0.8
1,971,187	+				-1.2
1,971,187	+				-0.7
1,971,188	-				-0.4
1,971,188	-				+0.1
1,971,272	-		DZA65_RS09350	0.12	-0.3
1,971,272	-		DZA65_RS09350	0.12	-1.2
1,971,284	+		DZA65_RS09350	0.13	+1.2
1,971,288	+		DZA65_RS09350	0.14	+0.6
1,971,288	+		DZA65_RS09350	0.14	-0.4
1,971,289	-		DZA65_RS09350	0.14	+0.8
1,971,312	-		DZA65_RS09350	0.16	-0.8
1,971,358	+		DZA65_RS09350	0.21	-0.4
1,971,358	+		DZA65_RS09350	0.21	-0.3
1,971,358	+		DZA65_RS09350	0.21	+3.5
1,971,358	+				+0.3
1,971,359	-				+1.6
1,971,359	-		DZA65_RS09350	0.21	-0.2
1,971,359	-		DZA65_RS09350	0.21	-0.7
1,971,359	-		DZA65_RS09350	0.21	+0.7
1,971,359	-				-0.7
1,971,370	+		DZA65_RS09350	0.22	-2.7
1,971,370	+		DZA65_RS09350	0.22	-2.6
1,971,370	+		DZA65_RS09350	0.22	-0.8
1,971,370	+		DZA65_RS09350	0.22	-1.2
1,971,370	+		DZA65_RS09350	0.22	-0.0
1,971,371	-		DZA65_RS09350	0.22	-0.4
1,971,371	-		DZA65_RS09350	0.22	+0.7
1,971,371	-		DZA65_RS09350	0.22	+1.5
1,971,371	-		DZA65_RS09350	0.22	-0.7
1,971,371	-		DZA65_RS09350	0.22	-0.1
1,971,371	-		DZA65_RS09350	0.22	+2.4
1,971,371	-		DZA65_RS09350	0.22	-0.1
1,971,371	-		DZA65_RS09350	0.22	-0.5
1,971,371	-		DZA65_RS09350	0.22	-1.5
1,971,371	-		DZA65_RS09350	0.22	-0.7
1,971,371	-		DZA65_RS09350	0.22	-1.7
1,971,448	+		DZA65_RS09350	0.30	+1.1
1,971,448	+		DZA65_RS09350	0.30	+1.0
1,971,448	+		DZA65_RS09350	0.30	+0.6
1,971,448	+		DZA65_RS09350	0.30	-0.5
1,971,449	-		DZA65_RS09350	0.30	+2.3
1,971,449	-		DZA65_RS09350	0.30	-0.5
1,971,449	-		DZA65_RS09350	0.30	+0.3
1,971,449	-		DZA65_RS09350	0.30	+1.3
1,971,449	-		DZA65_RS09350	0.30	+0.3
1,971,449	-		DZA65_RS09350	0.30	+1.3
1,971,449	-		DZA65_RS09350	0.30	-0.9
1,971,482	+		DZA65_RS09350	0.34	-0.5
1,971,482	+		DZA65_RS09350	0.34	+0.3
1,971,483	-		DZA65_RS09350	0.34	+0.3
1,971,563	-		DZA65_RS09350	0.42	+0.8
1,971,612	-		DZA65_RS09350	0.47	-0.1
1,971,612	-		DZA65_RS09350	0.47	-0.2
1,971,653	+		DZA65_RS09350	0.51	+1.2
1,971,653	+		DZA65_RS09350	0.51	+1.3
1,971,653	+		DZA65_RS09350	0.51	+0.9
1,971,653	+		DZA65_RS09350	0.51	+0.3
1,971,653	+		DZA65_RS09350	0.51	+0.7
1,971,653	+		DZA65_RS09350	0.51	-0.1
1,971,653	+		DZA65_RS09350	0.51	+0.3
1,971,654	-				+1.7
1,971,654	-		DZA65_RS09350	0.51	+0.6
1,971,654	-		DZA65_RS09350	0.51	+1.9
1,971,725	+		DZA65_RS09350	0.59	-0.7
1,971,742	+		DZA65_RS09350	0.60	-0.9
1,971,749	-		DZA65_RS09350	0.61	-0.1
1,971,749	-		DZA65_RS09350	0.61	-0.8
1,971,756	-		DZA65_RS09350	0.62	+0.6
1,971,784	+		DZA65_RS09350	0.65	-0.4
1,971,805	+		DZA65_RS09350	0.67	-3.2
1,971,805	+		DZA65_RS09350	0.67	-0.7
1,971,805	+		DZA65_RS09350	0.67	-1.2
1,971,825	-		DZA65_RS09350	0.69	-0.1
1,971,825	-		DZA65_RS09350	0.69	-2.2
1,971,830	+		DZA65_RS09350	0.69	+0.1
1,971,838	+				-0.2
1,971,838	+		DZA65_RS09350	0.70	-0.5
1,971,839	-		DZA65_RS09350	0.70	-1.2
1,971,858	+		DZA65_RS09350	0.72	+0.3
1,971,858	+		DZA65_RS09350	0.72	+2.1
1,971,858	+		DZA65_RS09350	0.72	-1.0
1,971,858	+				-1.7
1,971,858	+		DZA65_RS09350	0.72	+0.8
1,971,858	+		DZA65_RS09350	0.72	-2.1
1,971,858	+		DZA65_RS09350	0.72	+0.2
1,971,859	-		DZA65_RS09350	0.72	+1.0
1,971,859	-		DZA65_RS09350	0.72	-1.2
1,971,859	-		DZA65_RS09350	0.72	+0.9
1,971,859	-		DZA65_RS09350	0.72	-0.5
1,971,859	-		DZA65_RS09350	0.72	+0.2
1,971,859	-		DZA65_RS09350	0.72	+0.3
1,971,889	+		DZA65_RS09350	0.76	+1.2
1,971,889	+		DZA65_RS09350	0.76	-0.5
1,971,889	+		DZA65_RS09350	0.76	-1.4
1,971,890	-		DZA65_RS09350	0.76	-0.7
1,971,959	+		DZA65_RS09350	0.83	-2.7
1,971,959	+		DZA65_RS09350	0.83	-1.1
1,971,959	+		DZA65_RS09350	0.83	+1.1
1,971,960	-		DZA65_RS09350	0.83	+0.0
1,971,960	-		DZA65_RS09350	0.83	+0.5
1,971,960	-		DZA65_RS09350	0.83	+0.1
1,971,960	-		DZA65_RS09350	0.83	-2.0
1,971,992	-		DZA65_RS09350	0.86	+0.6
1,972,060	+				+1.0
1,972,109	+				+0.6
1,972,155	+				+0.5
1,972,184	+				-0.2
1,972,184	+				-3.4
1,972,205	-				+0.5
1,972,221	+				+0.1
1,972,233	+				+0.4
1,972,234	-				-2.2
1,972,234	-				-1.8
1,972,264	-				+0.6
1,972,278	-				-0.2
1,972,315	-				+0.7
1,972,332	+				-0.1
1,972,333	-				-1.7
1,972,333	-				+1.3
1,972,333	-				-0.7
1,972,333	-				+0.3
1,972,349	+				+0.2
1,972,362	+				+1.4
1,972,362	+				-0.1
1,972,468	+		DZA65_RS09355	0.11	+1.8
1,972,468	+		DZA65_RS09355	0.11	-1.8
1,972,490	+		DZA65_RS09355	0.14	+1.0
1,972,491	-		DZA65_RS09355	0.14	+0.8
1,972,491	-		DZA65_RS09355	0.14	-1.2
1,972,491	-		DZA65_RS09355	0.14	-0.4
1,972,504	-		DZA65_RS09355	0.16	-2.8
1,972,504	-		DZA65_RS09355	0.16	-0.1
1,972,519	-		DZA65_RS09355	0.18	+0.3
1,972,519	-		DZA65_RS09355	0.18	+1.2
1,972,529	-		DZA65_RS09355	0.19	-2.5
1,972,529	-		DZA65_RS09355	0.19	+0.7
1,972,616	+		DZA65_RS09355	0.30	-1.1
1,972,616	+		DZA65_RS09355	0.30	+1.2
1,972,616	+		DZA65_RS09355	0.30	-0.4
1,972,616	+		DZA65_RS09355	0.30	+0.6
1,972,616	+		DZA65_RS09355	0.30	+1.2
1,972,616	+		DZA65_RS09355	0.30	-1.0
1,972,617	-		DZA65_RS09355	0.30	+1.4
1,972,617	-		DZA65_RS09355	0.30	+0.4
1,972,617	-		DZA65_RS09355	0.30	+0.3
1,972,617	-		DZA65_RS09355	0.30	-0.9
1,972,617	-		DZA65_RS09355	0.30	+0.5
1,972,617	-		DZA65_RS09355	0.30	+1.2
1,972,617	-		DZA65_RS09355	0.30	-1.1
1,972,618	+		DZA65_RS09355	0.30	+0.3
1,972,618	+		DZA65_RS09355	0.30	-0.4
1,972,618	+		DZA65_RS09355	0.30	-2.2
1,972,618	+		DZA65_RS09355	0.30	+0.8
1,972,619	-		DZA65_RS09355	0.30	+0.6
1,972,722	-		DZA65_RS09355	0.43	-2.5
1,972,799	+		DZA65_RS09355	0.52	-0.4
1,972,799	+		DZA65_RS09355	0.52	+0.3
1,972,800	-		DZA65_RS09355	0.53	+1.0
1,972,802	+		DZA65_RS09355	0.53	-0.7
1,972,802	+		DZA65_RS09355	0.53	+0.3
1,972,802	+		DZA65_RS09355	0.53	-1.7
1,972,803	-		DZA65_RS09355	0.53	+1.3
1,972,803	-		DZA65_RS09355	0.53	-0.2
1,972,832	+		DZA65_RS09355	0.57	-0.7
1,972,903	+		DZA65_RS09355	0.65	-0.1
1,972,904	-		DZA65_RS09355	0.65	-2.0
1,972,904	-		DZA65_RS09355	0.65	-0.2
1,972,921	+		DZA65_RS09355	0.68	-0.8
1,972,958	+		DZA65_RS09355	0.72	+0.8
1,973,034	+		DZA65_RS09355	0.82	+1.2
1,973,034	+		DZA65_RS09355	0.82	-0.8
1,973,034	+		DZA65_RS09355	0.82	+1.6
1,973,034	+		DZA65_RS09355	0.82	+0.5
1,973,034	+		DZA65_RS09355	0.82	-0.7
1,973,035	-		DZA65_RS09355	0.82	+0.1
1,973,035	-		DZA65_RS09355	0.82	-0.6
1,973,080	+		DZA65_RS09355	0.87	+1.0
1,973,126	+				+0.2
1,973,126	+				+0.2