Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09305

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,961,744	+		DZA65_RS09295	0.82	+0.9
1,961,745	-				+0.4
1,961,809	+		DZA65_RS09295	0.87	-1.2
1,961,810	-		DZA65_RS09295	0.87	+0.2
1,961,810	-		DZA65_RS09295	0.87	-1.0
1,961,810	-		DZA65_RS09295	0.87	-2.1
1,961,965	+				+0.9
1,961,965	+				-3.5
1,961,965	+				+0.6
1,961,986	+				-0.6
1,961,986	+				-0.4
1,961,986	+				+0.5
1,961,986	+				-0.2
1,961,987	-				+0.3
1,961,987	-				+1.9
1,961,987	-				-0.4
1,961,987	-				+0.8
1,961,987	-				+0.7
1,961,987	-				+2.3
1,961,987	-				-0.6
1,962,006	+				+1.0
1,962,006	+				+0.2
1,962,007	-				-0.6
1,962,016	+				+0.8
1,962,016	+				+2.7
1,962,017	-				+0.5
1,962,019	+				-1.2
1,962,019	+				-1.0
1,962,019	+				-0.8
1,962,019	+				+0.8
1,962,019	+				-0.2
1,962,019	+				+0.4
1,962,019	+				-1.2
1,962,019	+				-0.1
1,962,019	+				+1.9
1,962,019	+				+0.1
1,962,020	-				-2.0
1,962,020	-				+0.4
1,962,020	-				+0.4
1,962,020	-				+0.1
1,962,020	-				-0.2
1,962,020	-				-0.9
1,962,020	-				+0.4
1,962,020	-				-0.6
1,962,020	-				+0.4
1,962,020	-				-1.7
1,962,020	-				+1.4
1,962,020	-				-0.9
1,962,030	+				+1.8
1,962,030	+				-2.0
1,962,030	+				-0.5
1,962,031	-				-0.5
1,962,082	+				+1.1
1,962,174	+				+0.9
1,962,174	+				+0.7
1,962,175	-				-1.2
1,962,178	+				-0.9
1,962,178	+				+0.4
1,962,178	+				+1.6
1,962,178	+				+0.4
1,962,178	+				+1.4
1,962,179	-				+1.4
1,962,179	-				-0.1
1,962,179	-				-0.0
1,962,179	-				-0.4
1,962,180	+				-0.4
1,962,180	+				+0.1
1,962,180	+				-0.4
1,962,180	+				-0.4
1,962,180	+				-2.6
1,962,181	-				+0.1
1,962,181	-				-0.6
1,962,181	-				-0.2
1,962,181	-				-0.9
1,962,181	-				-0.6
1,962,261	+				+0.7
1,962,278	+				+0.8
1,962,315	-				+0.4
1,962,346	+		DZA65_RS09300	0.22	+1.0
1,962,346	+				+1.9
1,962,347	-		DZA65_RS09300	0.22	-0.2
1,962,347	-		DZA65_RS09300	0.22	-1.2
1,962,347	-		DZA65_RS09300	0.22	-0.2
1,962,347	-		DZA65_RS09300	0.22	+0.4
1,962,347	-		DZA65_RS09300	0.22	+2.2
1,962,347	-		DZA65_RS09300	0.22	-2.0
1,962,347	-		DZA65_RS09300	0.22	-0.2
1,962,349	+		DZA65_RS09300	0.23	+0.2
1,962,349	+		DZA65_RS09300	0.23	+0.1
1,962,349	+		DZA65_RS09300	0.23	-0.2
1,962,349	+		DZA65_RS09300	0.23	+0.6
1,962,349	+		DZA65_RS09300	0.23	+0.4
1,962,349	+		DZA65_RS09300	0.23	-2.1
1,962,349	+		DZA65_RS09300	0.23	+0.8
1,962,350	-		DZA65_RS09300	0.23	+0.7
1,962,350	-		DZA65_RS09300	0.23	+0.5
1,962,350	-		DZA65_RS09300	0.23	-0.8
1,962,350	-		DZA65_RS09300	0.23	+0.8
1,962,400	+		DZA65_RS09300	0.38	-0.9
1,962,400	+		DZA65_RS09300	0.38	-1.6
1,962,400	+		DZA65_RS09300	0.38	+0.4
1,962,400	+		DZA65_RS09300	0.38	-0.4
1,962,400	+		DZA65_RS09300	0.38	+0.3
1,962,400	+		DZA65_RS09300	0.38	-1.6
1,962,401	-		DZA65_RS09300	0.38	-1.6
1,962,401	-		DZA65_RS09300	0.38	-0.8
1,962,401	-		DZA65_RS09300	0.38	+0.2
1,962,401	-		DZA65_RS09300	0.38	-0.6
1,962,484	+		DZA65_RS09300	0.62	+1.9
1,962,485	-		DZA65_RS09300	0.63	-0.6
1,962,500	-		DZA65_RS09300	0.67	+0.8
1,962,502	+		DZA65_RS09300	0.68	+0.1
1,962,502	+		DZA65_RS09300	0.68	-0.4
1,962,502	+		DZA65_RS09300	0.68	-0.9
1,962,502	+		DZA65_RS09300	0.68	-2.0
1,962,503	-		DZA65_RS09300	0.68	-0.2
1,962,503	-		DZA65_RS09300	0.68	+0.4
1,962,503	-		DZA65_RS09300	0.68	+0.7
1,962,508	-		DZA65_RS09300	0.69	-0.6
1,962,598	+				-2.2
1,962,598	+				-0.9
1,962,598	+				-0.9
1,962,598	+				+0.4
1,962,599	-				-2.0
1,962,599	-				-2.0
1,962,599	-				-0.9
1,962,599	-				-1.2
1,962,599	-				+0.4
1,962,599	-				+0.7
1,962,599	-				+0.7
1,962,599	-				-0.2
1,962,599	-				-0.3
1,962,599	-				+0.4
1,962,601	+				-1.2
1,962,601	+				-1.2
1,962,602	-				+0.8
1,962,602	-				-0.1
1,962,602	-				-0.1
1,962,611	-				-2.6
1,962,611	-				+1.1
1,962,614	+				-0.8
1,962,614	+				+0.6
1,962,614	+				+0.6
1,962,614	+				+0.4
1,962,614	+				-0.9
1,962,614	+				-1.1
1,962,614	+				+0.8
1,962,614	+				+0.5
1,962,615	-				+0.1
1,962,615	-				+2.1
1,962,615	-				+1.5
1,962,615	-				-1.1
1,962,615	-				-1.9
1,962,615	-				+0.4
1,962,626	-				+1.0
1,962,629	+				-0.6
1,962,629	+				-0.6
1,962,629	+				-0.8
1,962,629	+				-0.6
1,962,629	+				+0.0
1,962,629	+				-1.1
1,962,629	+				-0.2
1,962,629	+				+0.2
1,962,629	+				+1.0
1,962,629	+				-1.5
1,962,629	+				-0.4
1,962,629	+				-0.1
1,962,629	+				-0.3
1,962,630	-				-1.1
1,962,630	-				-0.5
1,962,630	-				+1.5
1,962,630	-				+0.2
1,962,630	-				-0.6
1,962,630	-				+0.6
1,962,630	-				-0.4
1,962,630	-				-0.8
1,962,630	-				+0.7
1,962,630	-				-3.6
1,962,630	-				-1.8
1,962,640	+				+1.1
1,962,640	+				-0.3
1,962,640	+				-1.4
1,962,641	-				-0.2
1,962,641	-				-0.5
1,962,641	-				-0.9
1,962,641	-				+0.7
1,962,644	+				+0.9
1,962,644	+				+0.6
1,962,644	+				-2.2
1,962,644	+				-0.2
1,962,644	+				+0.5
1,962,644	+				-0.2
1,962,644	+				-0.2
1,962,644	+				+0.4
1,962,644	+				-0.3
1,962,644	+				+0.4
1,962,644	+				+1.2
1,962,644	+				-0.3
1,962,644	+				-1.2
1,962,645	-				+1.5
1,962,645	-				-0.6
1,962,645	-				+1.2
1,962,645	-				+0.2
1,962,645	-				+1.7
1,962,645	-				+0.9
1,962,645	-				-1.1
1,962,728	-				-0.8
1,962,802	+		DZA65_RS09305	0.14	-0.3
1,962,802	+		DZA65_RS09305	0.14	-2.0
1,962,802	+		DZA65_RS09305	0.14	+2.3
1,962,803	-		DZA65_RS09305	0.14	+0.3
1,962,803	-		DZA65_RS09305	0.14	-1.2
1,962,803	-		DZA65_RS09305	0.14	+0.5
1,962,803	-		DZA65_RS09305	0.14	-1.2
1,962,803	-		DZA65_RS09305	0.14	-0.2
1,962,803	-		DZA65_RS09305	0.14	-0.9
1,962,803	-		DZA65_RS09305	0.14	+0.3
1,962,811	+		DZA65_RS09305	0.16	-2.1
1,962,811	+		DZA65_RS09305	0.16	-0.5
1,962,811	+		DZA65_RS09305	0.16	+0.3
1,962,811	+		DZA65_RS09305	0.16	-1.6
1,962,812	-		DZA65_RS09305	0.16	+0.0
1,962,812	-		DZA65_RS09305	0.16	-0.5
1,962,812	-		DZA65_RS09305	0.16	-1.7
1,962,890	+		DZA65_RS09305	0.31	-0.5
1,962,912	-		DZA65_RS09305	0.35	-1.4
1,962,949	+		DZA65_RS09305	0.42	-0.4
1,962,949	+		DZA65_RS09305	0.42	-0.2
1,962,950	-		DZA65_RS09305	0.42	+0.9
1,962,972	+		DZA65_RS09305	0.46	-0.1
1,962,972	+		DZA65_RS09305	0.46	+0.3
1,962,973	-		DZA65_RS09305	0.46	-1.0
1,962,973	-		DZA65_RS09305	0.46	-1.2
1,963,043	+		DZA65_RS09305	0.59	-0.5
1,963,043	+		DZA65_RS09305	0.59	+0.5
1,963,043	+		DZA65_RS09305	0.59	+0.9
1,963,043	+		DZA65_RS09305	0.59	-2.0
1,963,044	-		DZA65_RS09305	0.60	-2.2
1,963,085	+		DZA65_RS09305	0.67	+0.1
1,963,085	+		DZA65_RS09305	0.67	+1.2
1,963,085	+		DZA65_RS09305	0.67	+0.9
1,963,085	+		DZA65_RS09305	0.67	+0.3
1,963,085	+		DZA65_RS09305	0.67	-1.0
1,963,085	+		DZA65_RS09305	0.67	+0.4
1,963,085	+		DZA65_RS09305	0.67	-1.2
1,963,086	-		DZA65_RS09305	0.67	-1.0
1,963,086	-		DZA65_RS09305	0.67	+0.3
1,963,086	-		DZA65_RS09305	0.67	-1.5
1,963,086	-		DZA65_RS09305	0.67	-1.7
1,963,086	-		DZA65_RS09305	0.67	-1.2
1,963,086	-		DZA65_RS09305	0.67	-0.9
1,963,086	-		DZA65_RS09305	0.67	-1.4
1,963,086	-		DZA65_RS09305	0.67	+0.8
1,963,086	-		DZA65_RS09305	0.67	+0.6
1,963,087	+		DZA65_RS09305	0.68	-0.5
1,963,087	+		DZA65_RS09305	0.68	-0.2
1,963,087	+		DZA65_RS09305	0.68	+1.1
1,963,087	+		DZA65_RS09305	0.68	-0.3
1,963,087	+		DZA65_RS09305	0.68	-0.2
1,963,087	+		DZA65_RS09305	0.68	+0.1
1,963,087	+		DZA65_RS09305	0.68	-2.0
1,963,087	+		DZA65_RS09305	0.68	-0.9
1,963,087	+		DZA65_RS09305	0.68	+0.3
1,963,087	+		DZA65_RS09305	0.68	-1.0
1,963,087	+		DZA65_RS09305	0.68	-0.9
1,963,087	+		DZA65_RS09305	0.68	-0.2
1,963,088	-		DZA65_RS09305	0.68	-0.4
1,963,088	-		DZA65_RS09305	0.68	+0.0
1,963,088	-		DZA65_RS09305	0.68	+0.1
1,963,088	-		DZA65_RS09305	0.68	-0.7
1,963,088	-		DZA65_RS09305	0.68	+0.3
1,963,088	-		DZA65_RS09305	0.68	-1.0
1,963,088	-		DZA65_RS09305	0.68	+0.8
1,963,088	-		DZA65_RS09305	0.68	-2.1
1,963,103	+		DZA65_RS09305	0.71	-0.2
1,963,183	+		DZA65_RS09305	0.86	-0.1
1,963,244	+				-0.7
1,963,244	+				+0.3
1,963,245	-				+1.3
1,963,245	-				-0.4
1,963,245	-				-0.2
1,963,289	+				-0.9
1,963,289	+				+0.8
1,963,290	-				-1.7
1,963,290	-				-0.5
1,963,290	-				-0.8
1,963,294	+				+0.2
1,963,294	+				-2.2
1,963,294	+				-0.7
1,963,294	+				+0.3
1,963,294	+				+0.1
1,963,294	+				-0.7
1,963,294	+				-1.0
1,963,294	+				-0.5
1,963,294	+				-1.2
1,963,294	+				-0.3
1,963,294	+				+1.3
1,963,294	+				+0.9
1,963,294	+				-1.4
1,963,294	+				-1.2
1,963,294	+				+0.3
1,963,294	+				+1.0
1,963,294	+				+0.5
1,963,294	+				-0.7
1,963,295	-				+0.6
1,963,295	-				-0.1
1,963,295	-				-1.7
1,963,295	-				+1.3
1,963,295	-				-1.2
1,963,295	-				-0.3
1,963,295	-				-0.9
1,963,295	-				+1.2
1,963,295	-				-0.4
1,963,295	-				+0.2
1,963,295	-				+0.8
1,963,295	-				-0.4
1,963,295	-				+2.3
1,963,295	-				-2.0
1,963,295	-				-0.4
1,963,295	-				+0.1
1,963,303	-				+1.2
1,963,303	-				+0.2
1,963,303	-				-2.7
1,963,307	+				+0.6
1,963,307	+				-1.2
1,963,307	+				-0.4
1,963,307	+				-0.3
1,963,307	+				-0.2
1,963,308	-				+1.6
1,963,308	-				+0.1
1,963,308	-				-1.9
1,963,320	+				+1.5
1,963,320	+				-1.0
1,963,320	+				+0.0
1,963,321	-				+0.0
1,963,321	-				+0.3
1,963,321	-				-1.2
1,963,325	+				-0.7
1,963,326	-				-1.2
1,963,390	+				-0.8
1,963,390	+				+0.3
1,963,390	+				+1.2
1,963,390	+				-3.4
1,963,390	+				+0.2
1,963,390	+				-0.7
1,963,391	-				-2.5
1,963,391	-				+1.1
1,963,391	-				-0.6
1,963,420	+				-0.7
1,963,420	+				+0.8
1,963,421	-				-0.4
1,963,428	+				-1.5
1,963,434	+				+0.3
1,963,501	-				+0.8
1,963,571	+				+0.3
1,963,571	+				-0.7
1,963,572	-				+1.7
1,963,573	+				+1.9
1,963,574	-				-2.0
1,963,574	-				-2.2
1,963,704	+				+0.3
1,963,704	+				-0.8
1,963,704	+				-0.7
1,963,705	-				+1.0
1,963,705	-				-0.3
1,963,705	-				-0.8
1,963,729	+				+0.6
1,963,729	+				-0.4
1,963,738	+				-1.1
1,963,771	+				+1.1
1,963,784	-				-2.0
1,963,784	-				-1.2
1,963,784	-				-1.0
1,963,814	+				+1.2
1,963,815	-				-0.7
1,963,815	-				-2.0
1,963,959	+				-0.4
1,963,960	-				-0.7
1,963,960	-				-1.1
1,963,960	-				+0.0
1,964,013	+		DZA65_RS09310	0.13	-0.1
1,964,013	+				-0.2
1,964,014	-				+1.3
1,964,014	-		DZA65_RS09310	0.13	+0.3
1,964,019	+		DZA65_RS09310	0.13	-0.7
1,964,019	+		DZA65_RS09310	0.13	-1.8
1,964,019	+		DZA65_RS09310	0.13	-0.3
1,964,019	+		DZA65_RS09310	0.13	-3.4
1,964,019	+		DZA65_RS09310	0.13	+0.3
1,964,019	+		DZA65_RS09310	0.13	+1.3
1,964,020	-		DZA65_RS09310	0.14	-1.5
1,964,086	-		DZA65_RS09310	0.18	+0.2
1,964,086	-		DZA65_RS09310	0.18	+2.7
1,964,086	-		DZA65_RS09310	0.18	+0.6
1,964,165	+		DZA65_RS09310	0.23	-0.4
1,964,166	-				+0.3
1,964,166	-		DZA65_RS09310	0.23	-2.2
1,964,166	-		DZA65_RS09310	0.23	-1.0
1,964,166	-		DZA65_RS09310	0.23	-1.8
1,964,189	+		DZA65_RS09310	0.24	-1.5
1,964,189	+		DZA65_RS09310	0.24	-1.7
1,964,189	+		DZA65_RS09310	0.24	-1.0
1,964,190	-		DZA65_RS09310	0.24	-1.4
1,964,190	-		DZA65_RS09310	0.24	+0.1
1,964,190	-		DZA65_RS09310	0.24	-0.2
1,964,190	-		DZA65_RS09310	0.24	+0.9
1,964,190	-		DZA65_RS09310	0.24	+0.4
1,964,214	+		DZA65_RS09310	0.26	-0.4
1,964,214	+		DZA65_RS09310	0.26	+0.2
1,964,215	-		DZA65_RS09310	0.26	-1.1
1,964,215	-		DZA65_RS09310	0.26	-0.9
1,964,215	-		DZA65_RS09310	0.26	+1.3
1,964,215	-		DZA65_RS09310	0.26	+0.8