Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09225

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,945,634	-		DZA65_RS09215	0.39	-0.1
1,945,634	-		DZA65_RS09215	0.39	-1.4
1,945,634	-		DZA65_RS09215	0.39	+0.3
1,945,634	-		DZA65_RS09215	0.39	+0.0
1,945,666	+		DZA65_RS09215	0.45	+0.4
1,945,666	+		DZA65_RS09215	0.45	-0.2
1,945,667	-		DZA65_RS09215	0.45	-2.1
1,945,681	+		DZA65_RS09215	0.48	+0.9
1,945,681	+		DZA65_RS09215	0.48	-0.4
1,945,682	-		DZA65_RS09215	0.48	+0.6
1,945,684	+		DZA65_RS09215	0.49	-0.4
1,945,684	+		DZA65_RS09215	0.49	-0.3
1,945,685	-		DZA65_RS09215	0.49	-0.9
1,945,685	-		DZA65_RS09215	0.49	+0.1
1,945,685	-		DZA65_RS09215	0.49	-1.8
1,945,685	-		DZA65_RS09215	0.49	-0.6
1,945,735	+		DZA65_RS09215	0.58	-2.0
1,945,736	-		DZA65_RS09215	0.59	+0.5
1,945,761	+		DZA65_RS09215	0.64	+1.4
1,945,879	+		DZA65_RS09215	0.87	+1.0
1,945,932	-				+0.2
1,945,945	+				+0.4
1,945,946	-				+0.4
1,945,946	-				+0.4
1,945,946	-				+0.9
1,945,956	+				-0.5
1,945,957	-				-0.4
1,946,052	-				-1.2
1,946,120	+		DZA65_RS09220	0.20	-0.4
1,946,121	-		DZA65_RS09220	0.21	+1.2
1,946,124	+		DZA65_RS09220	0.21	+0.2
1,946,124	+		DZA65_RS09220	0.21	-0.2
1,946,124	+		DZA65_RS09220	0.21	-1.6
1,946,124	+		DZA65_RS09220	0.21	+1.4
1,946,124	+		DZA65_RS09220	0.21	+0.1
1,946,124	+		DZA65_RS09220	0.21	+0.5
1,946,124	+		DZA65_RS09220	0.21	+0.5
1,946,124	+		DZA65_RS09220	0.21	+0.1
1,946,124	+		DZA65_RS09220	0.21	-0.7
1,946,124	+		DZA65_RS09220	0.21	+2.2
1,946,124	+		DZA65_RS09220	0.21	+1.1
1,946,124	+		DZA65_RS09220	0.21	-0.2
1,946,125	-		DZA65_RS09220	0.21	-0.2
1,946,125	-		DZA65_RS09220	0.21	-1.0
1,946,125	-		DZA65_RS09220	0.21	-0.6
1,946,125	-		DZA65_RS09220	0.21	-0.6
1,946,125	-		DZA65_RS09220	0.21	+0.9
1,946,125	-		DZA65_RS09220	0.21	+0.6
1,946,284	+		DZA65_RS09220	0.54	+0.0
1,946,284	+		DZA65_RS09220	0.54	+0.1
1,946,284	+		DZA65_RS09220	0.54	+0.0
1,946,285	-		DZA65_RS09220	0.54	-2.0
1,946,285	-		DZA65_RS09220	0.54	-0.4
1,946,285	-		DZA65_RS09220	0.54	-1.1
1,946,285	-		DZA65_RS09220	0.54	-0.4
1,946,285	-		DZA65_RS09220	0.54	-0.2
1,946,285	-		DZA65_RS09220	0.54	-0.4
1,946,285	-		DZA65_RS09220	0.54	-0.2
1,946,308	+		DZA65_RS09220	0.58	-1.1
1,946,309	-		DZA65_RS09220	0.59	+0.0
1,946,433	+		DZA65_RS09220	0.84	-0.6
1,946,434	-		DZA65_RS09220	0.84	-1.2
1,946,436	+		DZA65_RS09220	0.84	+0.1
1,946,436	+		DZA65_RS09220	0.84	-0.8
1,946,437	-		DZA65_RS09220	0.84	+0.2
1,946,437	-		DZA65_RS09220	0.84	-0.2
1,946,437	-		DZA65_RS09220	0.84	-0.6
1,946,437	-		DZA65_RS09220	0.84	+1.9
1,946,488	+				-0.6
1,946,488	+				-0.1
1,946,489	-				+0.1
1,946,489	-				+0.1
1,946,513	+				-0.2
1,946,514	-				-0.2
1,946,514	-				+0.1
1,946,514	-				-0.6
1,946,514	-				-0.6
1,946,514	-				-0.9
1,946,517	+				-1.2
1,946,517	+				-1.0
1,946,517	+				+0.7
1,946,517	+				+0.6
1,946,518	-				-0.2
1,946,518	-				-0.2
1,946,518	-				-0.0
1,946,519	+				-0.1
1,946,519	+				-0.1
1,946,519	+				-0.4
1,946,520	-				+0.4
1,946,531	+				-0.4
1,946,531	+				-2.0
1,946,531	+				+0.6
1,946,531	+				+0.6
1,946,531	+				+0.9
1,946,531	+				-1.6
1,946,532	-				-1.1
1,946,532	-				+1.0
1,946,532	-				-2.6
1,946,532	-				+0.9
1,946,535	+				-0.8
1,946,536	-				-0.9
1,946,536	-				-1.1
1,946,536	-				-1.6
1,946,536	-				+1.2
1,946,538	-				+1.8
1,946,543	-				-0.5
1,946,553	+				-0.6
1,946,574	-				-1.2
1,946,574	-				-0.4
1,946,574	-				+0.4
1,946,574	-				+0.9
1,946,579	-				+0.0
1,946,616	+				+0.6
1,946,616	+				+0.0
1,946,616	+				+0.0
1,946,616	+				-1.2
1,946,616	+				+0.6
1,946,616	+				-0.6
1,946,616	+				-0.6
1,946,617	-				-0.6
1,946,618	+				+0.8
1,946,618	+				+0.4
1,946,619	-				-0.8
1,946,619	-				-1.1
1,946,619	-				-0.4
1,946,619	-				-0.1
1,946,628	+				+0.0
1,946,628	+				-3.0
1,946,628	+				-0.2
1,946,628	+				-0.6
1,946,628	+				-0.6
1,946,628	+				+0.8
1,946,628	+				-0.9
1,946,628	+				+1.1
1,946,628	+				-0.6
1,946,628	+				-1.6
1,946,629	-				+0.8
1,946,629	-				-3.4
1,946,629	-				+0.4
1,946,629	-				-3.0
1,946,629	-				-0.4
1,946,629	-				+0.5
1,946,629	-				+0.3
1,946,635	+				-0.1
1,946,635	+				+0.4
1,946,635	+				-1.2
1,946,671	-				+0.4
1,946,673	+				-0.1
1,946,674	-				-0.7
1,946,674	-				+0.5
1,946,721	-				+0.4
1,946,824	+		DZA65_RS09225	0.16	+0.0
1,946,824	+		DZA65_RS09225	0.16	-1.0
1,946,824	+		DZA65_RS09225	0.16	-0.2
1,946,824	+		DZA65_RS09225	0.16	+0.3
1,946,824	+		DZA65_RS09225	0.16	-1.0
1,946,825	-		DZA65_RS09225	0.17	-0.6
1,946,825	-		DZA65_RS09225	0.17	-0.1
1,946,858	-		DZA65_RS09225	0.19	-0.1
1,946,858	-		DZA65_RS09225	0.19	-1.5
1,946,873	+		DZA65_RS09225	0.21	-1.4
1,946,873	+		DZA65_RS09225	0.21	+1.9
1,946,873	+		DZA65_RS09225	0.21	+0.4
1,946,873	+		DZA65_RS09225	0.21	+0.6
1,946,873	+		DZA65_RS09225	0.21	+0.3
1,946,873	+		DZA65_RS09225	0.21	-1.6
1,946,873	+		DZA65_RS09225	0.21	+0.2
1,946,874	-		DZA65_RS09225	0.21	+0.0
1,946,874	-		DZA65_RS09225	0.21	+0.9
1,946,874	-		DZA65_RS09225	0.21	-0.9
1,946,874	-		DZA65_RS09225	0.21	-0.5
1,946,877	+		DZA65_RS09225	0.21	-0.6
1,946,877	+		DZA65_RS09225	0.21	-0.3
1,946,877	+		DZA65_RS09225	0.21	-1.2
1,946,877	+		DZA65_RS09225	0.21	-0.9
1,946,878	-				+1.4
1,946,878	-		DZA65_RS09225	0.21	+1.1
1,946,878	-		DZA65_RS09225	0.21	-1.2
1,946,878	-		DZA65_RS09225	0.21	-2.1
1,946,878	-		DZA65_RS09225	0.21	+0.7
1,946,878	-		DZA65_RS09225	0.21	-1.2
1,946,878	-		DZA65_RS09225	0.21	-0.2
1,946,878	-		DZA65_RS09225	0.21	-1.2
1,946,878	-		DZA65_RS09225	0.21	+0.0
1,946,878	-		DZA65_RS09225	0.21	-1.0
1,946,878	-		DZA65_RS09225	0.21	+1.4
1,946,878	-		DZA65_RS09225	0.21	+0.4
1,946,878	-		DZA65_RS09225	0.21	-1.1
1,946,937	-		DZA65_RS09225	0.26	-0.4
1,947,046	+		DZA65_RS09225	0.35	+2.8
1,947,046	+		DZA65_RS09225	0.35	-1.0
1,947,046	+		DZA65_RS09225	0.35	-2.2
1,947,046	+		DZA65_RS09225	0.35	-2.0
1,947,046	+		DZA65_RS09225	0.35	-3.5
1,947,046	+				-1.6
1,947,046	+		DZA65_RS09225	0.35	-0.8
1,947,046	+		DZA65_RS09225	0.35	-0.8
1,947,046	+		DZA65_RS09225	0.35	-0.4
1,947,047	-		DZA65_RS09225	0.35	-0.2
1,947,047	-		DZA65_RS09225	0.35	-0.6
1,947,047	-		DZA65_RS09225	0.35	+0.4
1,947,047	-		DZA65_RS09225	0.35	-1.2
1,947,047	-		DZA65_RS09225	0.35	-0.4
1,947,047	-		DZA65_RS09225	0.35	+1.0
1,947,047	-		DZA65_RS09225	0.35	+0.1
1,947,047	-		DZA65_RS09225	0.35	-2.0
1,947,047	-		DZA65_RS09225	0.35	+0.4
1,947,048	+		DZA65_RS09225	0.35	+0.5
1,947,048	+		DZA65_RS09225	0.35	+0.2
1,947,049	-		DZA65_RS09225	0.36	-0.2
1,947,049	-		DZA65_RS09225	0.36	+0.0
1,947,049	-		DZA65_RS09225	0.36	-0.5
1,947,146	+		DZA65_RS09225	0.44	-0.2
1,947,146	+		DZA65_RS09225	0.44	-1.5
1,947,147	-		DZA65_RS09225	0.44	-2.2
1,947,147	-		DZA65_RS09225	0.44	-0.9
1,947,295	+		DZA65_RS09225	0.56	-0.7
1,947,295	+		DZA65_RS09225	0.56	+0.1
1,947,295	+				+1.4
1,947,295	+		DZA65_RS09225	0.56	-1.0
1,947,296	-		DZA65_RS09225	0.56	-0.5
1,947,296	-		DZA65_RS09225	0.56	-1.5
1,947,296	-		DZA65_RS09225	0.56	-0.1
1,947,297	+		DZA65_RS09225	0.57	-2.8
1,947,298	-		DZA65_RS09225	0.57	-1.3
1,947,298	-		DZA65_RS09225	0.57	-0.2
1,947,325	+		DZA65_RS09225	0.59	-1.1
1,947,326	-		DZA65_RS09225	0.59	+0.7
1,947,328	+		DZA65_RS09225	0.59	-1.2
1,947,328	+		DZA65_RS09225	0.59	+1.9
1,947,328	+		DZA65_RS09225	0.59	-1.4
1,947,328	+		DZA65_RS09225	0.59	-1.2
1,947,328	+		DZA65_RS09225	0.59	-2.6
1,947,328	+		DZA65_RS09225	0.59	+0.9
1,947,329	-		DZA65_RS09225	0.59	+0.7
1,947,329	-		DZA65_RS09225	0.59	+2.2
1,947,329	-		DZA65_RS09225	0.59	+0.8
1,947,365	+		DZA65_RS09225	0.62	-0.1
1,947,366	-		DZA65_RS09225	0.62	-0.4
1,947,427	-		DZA65_RS09225	0.68	+0.2
1,947,448	+		DZA65_RS09225	0.69	-2.0
1,947,449	-		DZA65_RS09225	0.69	-0.3
1,947,500	+		DZA65_RS09225	0.74	+0.5
1,947,501	-		DZA65_RS09225	0.74	-0.7
1,947,901	+		DZA65_RS09230	0.10	+0.5
1,947,901	+		DZA65_RS09230	0.10	-0.5
1,947,902	-		DZA65_RS09230	0.10	-0.0
1,947,989	-		DZA65_RS09230	0.20	-1.2
1,948,050	+		DZA65_RS09230	0.27	-0.2
1,948,050	+		DZA65_RS09230	0.27	-1.6
1,948,050	+		DZA65_RS09230	0.27	+0.4
1,948,051	-		DZA65_RS09230	0.27	+0.1
1,948,145	+		DZA65_RS09230	0.37	+0.5
1,948,145	+		DZA65_RS09230	0.37	+0.2
1,948,146	-		DZA65_RS09230	0.37	+0.5
1,948,146	-		DZA65_RS09230	0.37	-0.1
1,948,236	-		DZA65_RS09230	0.47	+1.4
1,948,236	-		DZA65_RS09230	0.47	+0.4
1,948,293	+		DZA65_RS09230	0.53	+0.9
1,948,294	-		DZA65_RS09230	0.53	-0.1
1,948,294	-		DZA65_RS09230	0.53	+0.4
1,948,358	+		DZA65_RS09230	0.60	-0.2
1,948,359	-		DZA65_RS09230	0.60	-0.0
1,948,379	-		DZA65_RS09230	0.63	-0.2
1,948,424	+		DZA65_RS09230	0.67	-0.8
1,948,424	+		DZA65_RS09230	0.67	-1.9
1,948,425	-		DZA65_RS09230	0.68	-0.2
1,948,426	+		DZA65_RS09230	0.68	-2.5
1,948,426	+		DZA65_RS09230	0.68	-0.3
1,948,426	+		DZA65_RS09230	0.68	+0.2
1,948,478	+		DZA65_RS09230	0.73	-0.9
1,948,479	-		DZA65_RS09230	0.73	+0.2
1,948,479	-		DZA65_RS09230	0.73	-0.5
1,948,479	-		DZA65_RS09230	0.73	+1.1
1,948,479	-		DZA65_RS09230	0.73	-2.2
1,948,523	+		DZA65_RS09230	0.78	+0.2
1,948,531	+		DZA65_RS09230	0.79	-2.2
1,948,531	+		DZA65_RS09230	0.79	+0.8
1,948,531	+		DZA65_RS09230	0.79	+0.5
1,948,531	+		DZA65_RS09230	0.79	-0.4
1,948,531	+		DZA65_RS09230	0.79	-1.2
1,948,532	-		DZA65_RS09230	0.79	+0.6
1,948,532	-		DZA65_RS09230	0.79	-0.3
1,948,532	-		DZA65_RS09230	0.79	-0.8
1,948,532	-		DZA65_RS09230	0.79	+0.4
1,948,572	+		DZA65_RS09230	0.84	+0.6
1,948,573	-		DZA65_RS09230	0.84	+0.1
1,948,640	+				-0.2
1,948,641	-				-0.0
1,948,696	+				-0.5
1,948,697	-				+1.1
1,948,721	+				-1.0
1,948,721	+				-0.1
1,948,779	-				-1.0
1,948,808	+				-0.1