Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08720

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,845,597	+				+0.6
1,845,597	+				+0.0
1,845,598	-				+1.0
1,845,598	-				-1.9
1,845,598	-				-0.3
1,845,598	-				-2.6
1,845,637	-				-0.1
1,845,686	-		DZA65_RS08715	0.11	-0.7
1,845,686	-		DZA65_RS08715	0.11	+1.2
1,845,759	-		DZA65_RS08715	0.20	+0.4
1,845,808	+		DZA65_RS08715	0.27	-0.0
1,845,808	+		DZA65_RS08715	0.27	-0.6
1,845,808	+		DZA65_RS08715	0.27	+0.7
1,845,809	-		DZA65_RS08715	0.27	-0.6
1,845,809	-		DZA65_RS08715	0.27	-0.0
1,845,809	-		DZA65_RS08715	0.27	+0.4
1,845,809	-		DZA65_RS08715	0.27	+0.9
1,845,811	+		DZA65_RS08715	0.27	+0.7
1,845,811	+		DZA65_RS08715	0.27	+0.4
1,845,811	+		DZA65_RS08715	0.27	+1.0
1,845,811	+		DZA65_RS08715	0.27	-1.6
1,845,811	+		DZA65_RS08715	0.27	+0.2
1,845,811	+		DZA65_RS08715	0.27	+1.1
1,845,811	+		DZA65_RS08715	0.27	-0.2
1,845,811	+		DZA65_RS08715	0.27	+0.4
1,845,811	+		DZA65_RS08715	0.27	-0.7
1,845,811	+		DZA65_RS08715	0.27	+0.4
1,845,811	+		DZA65_RS08715	0.27	-1.1
1,845,812	-		DZA65_RS08715	0.27	+1.2
1,845,812	-		DZA65_RS08715	0.27	-0.2
1,845,812	-		DZA65_RS08715	0.27	+0.1
1,845,845	+		DZA65_RS08715	0.31	+0.4
1,845,845	+		DZA65_RS08715	0.31	-0.6
1,845,845	+		DZA65_RS08715	0.31	+0.9
1,845,845	+		DZA65_RS08715	0.31	-0.2
1,845,869	-		DZA65_RS08715	0.35	+0.2
1,845,879	+		DZA65_RS08715	0.36	-2.0
1,845,879	+		DZA65_RS08715	0.36	-1.8
1,845,879	+		DZA65_RS08715	0.36	-0.1
1,845,879	+		DZA65_RS08715	0.36	+0.9
1,845,880	-		DZA65_RS08715	0.36	-0.2
1,845,880	-		DZA65_RS08715	0.36	+1.0
1,845,880	-		DZA65_RS08715	0.36	+0.6
1,845,880	-		DZA65_RS08715	0.36	+1.0
1,845,880	-		DZA65_RS08715	0.36	+0.1
1,845,881	+		DZA65_RS08715	0.36	-0.0
1,845,881	+		DZA65_RS08715	0.36	-3.3
1,845,881	+		DZA65_RS08715	0.36	-1.3
1,845,882	-		DZA65_RS08715	0.36	+0.3
1,845,882	-		DZA65_RS08715	0.36	-0.0
1,845,882	-		DZA65_RS08715	0.36	-1.9
1,845,882	-		DZA65_RS08715	0.36	-0.9
1,845,882	-		DZA65_RS08715	0.36	-0.4
1,845,913	-		DZA65_RS08715	0.40	+0.9
1,845,989	-		DZA65_RS08715	0.50	+1.4
1,845,989	-		DZA65_RS08715	0.50	-0.4
1,846,019	-		DZA65_RS08715	0.54	+0.7
1,846,030	-		DZA65_RS08715	0.56	-2.4
1,846,106	+		DZA65_RS08715	0.66	-0.6
1,846,106	+		DZA65_RS08715	0.66	-1.6
1,846,107	-		DZA65_RS08715	0.66	+1.4
1,846,107	-		DZA65_RS08715	0.66	-0.8
1,846,121	+		DZA65_RS08715	0.68	+0.2
1,846,121	+		DZA65_RS08715	0.68	+1.2
1,846,121	+		DZA65_RS08715	0.68	-0.7
1,846,190	+		DZA65_RS08715	0.77	-0.1
1,846,190	+		DZA65_RS08715	0.77	+0.2
1,846,209	-		DZA65_RS08715	0.79	+0.1
1,846,209	-		DZA65_RS08715	0.79	-0.9
1,846,211	+		DZA65_RS08715	0.80	+0.4
1,846,211	+		DZA65_RS08715	0.80	-0.6
1,846,211	+		DZA65_RS08715	0.80	-0.9
1,846,212	-		DZA65_RS08715	0.80	-2.0
1,846,212	-		DZA65_RS08715	0.80	+0.4
1,846,220	+		DZA65_RS08715	0.81	-1.2
1,846,220	+		DZA65_RS08715	0.81	+1.7
1,846,221	-		DZA65_RS08715	0.81	-0.2
1,846,221	-		DZA65_RS08715	0.81	+0.1
1,846,221	-		DZA65_RS08715	0.81	-0.8
1,846,221	-		DZA65_RS08715	0.81	+0.4
1,846,247	+		DZA65_RS08715	0.84	+1.4
1,846,247	+		DZA65_RS08715	0.84	+0.1
1,846,248	-		DZA65_RS08715	0.85	+0.6
1,846,248	-		DZA65_RS08715	0.85	-0.6
1,846,323	+				-0.2
1,846,324	-				+1.3
1,846,378	+				-0.6
1,846,378	+				-0.4
1,846,378	+				-1.6
1,846,379	-				-1.4
1,846,437	+				-1.0
1,846,437	+				+0.8
1,846,515	+				-3.0
1,846,515	+				+0.4
1,846,516	-				+0.4
1,846,516	-				-0.2
1,846,516	-				-1.7
1,846,519	+				+0.7
1,846,682	+		DZA65_RS08720	0.18	-0.4
1,846,682	+		DZA65_RS08720	0.18	+1.6
1,846,683	-		DZA65_RS08720	0.19	+1.1
1,846,733	-		DZA65_RS08720	0.29	-1.2
1,846,736	+		DZA65_RS08720	0.30	+0.8
1,846,736	+		DZA65_RS08720	0.30	-2.2
1,846,736	+		DZA65_RS08720	0.30	-0.0
1,846,736	+		DZA65_RS08720	0.30	+0.0
1,846,736	+		DZA65_RS08720	0.30	-0.0
1,846,736	+		DZA65_RS08720	0.30	-1.3
1,846,737	-		DZA65_RS08720	0.30	-0.2
1,846,737	-		DZA65_RS08720	0.30	-0.1
1,846,737	-		DZA65_RS08720	0.30	-1.4
1,846,737	-		DZA65_RS08720	0.30	-0.0
1,846,737	-		DZA65_RS08720	0.30	-0.1
1,846,738	+		DZA65_RS08720	0.30	-0.8
1,847,028	+				+0.5
1,847,029	-				-2.5
1,847,029	-				+2.3
1,847,037	-				+2.4
1,847,037	-				-1.8
1,847,054	-				-1.0
1,847,056	+				-2.4
1,847,057	-				+0.8
1,847,059	+				-0.4
1,847,060	-				+1.4
1,847,060	-				+1.0
1,847,063	+				-0.2
1,847,063	+				-0.5
1,847,063	+				+0.4
1,847,063	+				-0.6
1,847,063	+				-1.5
1,847,064	-				-2.4
1,847,064	-				+1.3
1,847,064	-				-3.6
1,847,064	-				+0.4
1,847,064	-				+1.5
1,847,130	+				-0.1
1,847,130	+				-0.0
1,847,130	+				+1.0
1,847,131	-				-2.2
1,847,131	-				+1.0
1,847,184	+				-0.8
1,847,184	+				-0.6
1,847,184	+				+0.2
1,847,184	+				+1.1
1,847,185	-				-1.5
1,847,188	-				+0.8
1,847,196	+				+0.4
1,847,197	-		DZA65_RS08725	0.10	+0.1
1,847,217	-		DZA65_RS08725	0.12	+3.9
1,847,230	-		DZA65_RS08725	0.13	+0.7
1,847,307	+		DZA65_RS08725	0.19	+0.4
1,847,307	+		DZA65_RS08725	0.19	+2.3
1,847,307	+		DZA65_RS08725	0.19	+0.2
1,847,307	+		DZA65_RS08725	0.19	+0.8
1,847,307	+		DZA65_RS08725	0.19	-0.2
1,847,307	+		DZA65_RS08725	0.19	+1.1
1,847,308	-		DZA65_RS08725	0.19	+1.9
1,847,308	-		DZA65_RS08725	0.19	-0.2
1,847,308	-		DZA65_RS08725	0.19	-0.6
1,847,308	-		DZA65_RS08725	0.19	+0.4
1,847,311	+		DZA65_RS08725	0.20	-1.9
1,847,311	+				-0.0
1,847,311	+		DZA65_RS08725	0.20	+0.8
1,847,312	-		DZA65_RS08725	0.20	-2.8
1,847,312	-		DZA65_RS08725	0.20	-1.1
1,847,418	+		DZA65_RS08725	0.29	+1.5
1,847,418	+		DZA65_RS08725	0.29	-1.8
1,847,419	-		DZA65_RS08725	0.29	-0.2
1,847,419	-		DZA65_RS08725	0.29	+0.8
1,847,419	-		DZA65_RS08725	0.29	-0.3
1,847,419	-		DZA65_RS08725	0.29	+1.6
1,847,420	+		DZA65_RS08725	0.29	-0.7
1,847,420	+		DZA65_RS08725	0.29	-1.2
1,847,421	-		DZA65_RS08725	0.29	+0.5
1,847,421	-		DZA65_RS08725	0.29	+1.0
1,847,432	+		DZA65_RS08725	0.30	+0.1
1,847,436	+		DZA65_RS08725	0.30	-0.4
1,847,436	+		DZA65_RS08725	0.30	+1.7
1,847,437	-		DZA65_RS08725	0.30	-1.4
1,847,437	-		DZA65_RS08725	0.30	-0.6
1,847,437	-		DZA65_RS08725	0.30	-0.6
1,847,437	-		DZA65_RS08725	0.30	-0.4
1,847,490	+		DZA65_RS08725	0.35	-0.1
1,847,490	+		DZA65_RS08725	0.35	+1.5
1,847,490	+		DZA65_RS08725	0.35	+0.7
1,847,490	+		DZA65_RS08725	0.35	+1.1
1,847,490	+		DZA65_RS08725	0.35	-1.2
1,847,491	-		DZA65_RS08725	0.35	+0.2
1,847,492	+				+0.7
1,847,493	-		DZA65_RS08725	0.35	-0.2
1,847,493	-		DZA65_RS08725	0.35	+0.9
1,847,630	+		DZA65_RS08725	0.47	-2.9
1,847,633	+		DZA65_RS08725	0.47	+0.8
1,847,633	+		DZA65_RS08725	0.47	+0.2
1,847,634	-		DZA65_RS08725	0.47	+2.1
1,847,634	-		DZA65_RS08725	0.47	-0.4
1,847,634	-		DZA65_RS08725	0.47	+0.7
1,847,634	-		DZA65_RS08725	0.47	-0.6
1,847,687	+		DZA65_RS08725	0.52	-0.5
1,847,687	+		DZA65_RS08725	0.52	+0.4
1,847,688	-		DZA65_RS08725	0.52	+1.1
1,847,688	-		DZA65_RS08725	0.52	+0.3
1,847,691	+		DZA65_RS08725	0.52	-0.0
1,847,692	-		DZA65_RS08725	0.52	-1.9
1,847,692	-		DZA65_RS08725	0.52	+0.6
1,847,692	-		DZA65_RS08725	0.52	+0.6
1,847,692	-		DZA65_RS08725	0.52	-0.6
1,847,736	+		DZA65_RS08725	0.56	-2.2
1,847,736	+		DZA65_RS08725	0.56	-0.4
1,847,736	+		DZA65_RS08725	0.56	-2.2
1,847,798	+		DZA65_RS08725	0.61	-0.1
1,847,898	+		DZA65_RS08725	0.69	+0.2
1,847,898	+		DZA65_RS08725	0.69	+0.2
1,847,898	+		DZA65_RS08725	0.69	+0.4
1,847,898	+		DZA65_RS08725	0.69	+0.8
1,847,898	+		DZA65_RS08725	0.69	+0.4
1,847,898	+		DZA65_RS08725	0.69	-0.2
1,847,898	+		DZA65_RS08725	0.69	+0.5
1,847,898	+		DZA65_RS08725	0.69	-0.3
1,847,898	+		DZA65_RS08725	0.69	-1.2
1,847,898	+		DZA65_RS08725	0.69	+0.2
1,847,898	+		DZA65_RS08725	0.69	+0.7
1,847,898	+		DZA65_RS08725	0.69	-0.5
1,847,898	+		DZA65_RS08725	0.69	-0.6
1,847,899	-		DZA65_RS08725	0.70	+1.1
1,847,899	-		DZA65_RS08725	0.70	+0.4
1,847,899	-				+1.0
1,847,899	-		DZA65_RS08725	0.70	+2.7
1,847,899	-		DZA65_RS08725	0.70	+0.4
1,847,899	-		DZA65_RS08725	0.70	-0.4
1,847,899	-		DZA65_RS08725	0.70	+1.3
1,847,899	-		DZA65_RS08725	0.70	+0.4
1,847,899	-				+1.0
1,847,899	-		DZA65_RS08725	0.70	-0.8
1,847,899	-		DZA65_RS08725	0.70	-2.2
1,847,899	-		DZA65_RS08725	0.70	-0.2
1,847,899	-		DZA65_RS08725	0.70	-1.2
1,847,899	-		DZA65_RS08725	0.70	+0.0
1,847,914	+		DZA65_RS08725	0.71	+0.4
1,847,915	-		DZA65_RS08725	0.71	+0.9
1,847,915	-		DZA65_RS08725	0.71	+1.2
1,847,915	-		DZA65_RS08725	0.71	-0.6
1,847,915	-		DZA65_RS08725	0.71	-0.4
1,847,915	-		DZA65_RS08725	0.71	-0.0
1,847,915	-		DZA65_RS08725	0.71	-0.0
1,847,917	-		DZA65_RS08725	0.71	-0.6
1,847,929	+		DZA65_RS08725	0.72	+0.4
1,847,929	+		DZA65_RS08725	0.72	-1.7
1,847,929	+		DZA65_RS08725	0.72	+0.0
1,847,929	+		DZA65_RS08725	0.72	+0.1
1,848,002	+		DZA65_RS08725	0.78	-0.3
1,848,002	+		DZA65_RS08725	0.78	+0.1
1,848,003	-		DZA65_RS08725	0.78	-1.7