Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08705

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,842,974	-				-0.8
1,842,974	-				+1.3
1,842,989	+				+0.1
1,842,989	+				+0.3
1,842,990	-				+0.4
1,842,990	-				+0.4
1,842,990	-				-2.3
1,843,116	-		DZA65_RS08700	0.16	-0.1
1,843,116	-		DZA65_RS08700	0.16	+1.9
1,843,116	-		DZA65_RS08700	0.16	+0.2
1,843,165	+		DZA65_RS08700	0.22	+2.1
1,843,165	+		DZA65_RS08700	0.22	+1.1
1,843,165	+		DZA65_RS08700	0.22	-0.0
1,843,169	+		DZA65_RS08700	0.22	-2.1
1,843,169	+		DZA65_RS08700	0.22	-0.6
1,843,169	+		DZA65_RS08700	0.22	+0.4
1,843,169	+		DZA65_RS08700	0.22	-0.9
1,843,169	+		DZA65_RS08700	0.22	-0.3
1,843,169	+		DZA65_RS08700	0.22	-0.1
1,843,169	+		DZA65_RS08700	0.22	+1.9
1,843,169	+		DZA65_RS08700	0.22	-0.8
1,843,169	+		DZA65_RS08700	0.22	+0.4
1,843,169	+		DZA65_RS08700	0.22	-0.0
1,843,169	+		DZA65_RS08700	0.22	-0.5
1,843,169	+		DZA65_RS08700	0.22	-1.6
1,843,169	+		DZA65_RS08700	0.22	+0.2
1,843,169	+		DZA65_RS08700	0.22	-0.6
1,843,170	-		DZA65_RS08700	0.22	+0.4
1,843,170	-		DZA65_RS08700	0.22	+0.8
1,843,170	-		DZA65_RS08700	0.22	-0.6
1,843,170	-		DZA65_RS08700	0.22	-2.8
1,843,170	-		DZA65_RS08700	0.22	+0.9
1,843,170	-		DZA65_RS08700	0.22	+0.1
1,843,170	-		DZA65_RS08700	0.22	-0.9
1,843,170	-		DZA65_RS08700	0.22	-0.6
1,843,170	-		DZA65_RS08700	0.22	-1.0
1,843,170	-		DZA65_RS08700	0.22	-0.6
1,843,170	-		DZA65_RS08700	0.22	-1.3
1,843,170	-		DZA65_RS08700	0.22	+0.4
1,843,170	-		DZA65_RS08700	0.22	-0.4
1,843,170	-		DZA65_RS08700	0.22	-1.2
1,843,170	-		DZA65_RS08700	0.22	+0.4
1,843,170	-		DZA65_RS08700	0.22	+0.6
1,843,170	-		DZA65_RS08700	0.22	+0.6
1,843,170	-		DZA65_RS08700	0.22	+0.6
1,843,170	-		DZA65_RS08700	0.22	-1.0
1,843,170	-		DZA65_RS08700	0.22	+0.2
1,843,170	-		DZA65_RS08700	0.22	-1.2
1,843,170	-		DZA65_RS08700	0.22	+1.8
1,843,170	-		DZA65_RS08700	0.22	+1.1
1,843,170	-		DZA65_RS08700	0.22	-0.6
1,843,170	-		DZA65_RS08700	0.22	+0.6
1,843,170	-		DZA65_RS08700	0.22	+0.1
1,843,170	-		DZA65_RS08700	0.22	-0.0
1,843,170	-		DZA65_RS08700	0.22	+1.0
1,843,270	+		DZA65_RS08700	0.33	+0.1
1,843,271	-		DZA65_RS08700	0.33	-2.6
1,843,299	-		DZA65_RS08700	0.36	+0.5
1,843,299	-		DZA65_RS08700	0.36	-0.6
1,843,401	+		DZA65_RS08700	0.47	-0.4
1,843,401	+		DZA65_RS08700	0.47	-1.4
1,843,402	-		DZA65_RS08700	0.47	-1.3
1,843,402	-		DZA65_RS08700	0.47	+3.7
1,843,402	-		DZA65_RS08700	0.47	-1.2
1,843,402	-		DZA65_RS08700	0.47	-0.3
1,843,405	+		DZA65_RS08700	0.47	+0.5
1,843,406	-				-0.9
1,843,406	-		DZA65_RS08700	0.47	+0.4
1,843,471	-		DZA65_RS08700	0.54	+0.4
1,843,471	-		DZA65_RS08700	0.54	-0.4
1,843,522	+		DZA65_RS08700	0.60	+0.4
1,843,522	+		DZA65_RS08700	0.60	-0.4
1,843,534	+		DZA65_RS08700	0.61	+1.1
1,843,534	+		DZA65_RS08700	0.61	-0.4
1,843,534	+		DZA65_RS08700	0.61	-0.0
1,843,534	+		DZA65_RS08700	0.61	+0.1
1,843,534	+		DZA65_RS08700	0.61	+0.6
1,843,534	+		DZA65_RS08700	0.61	-1.4
1,843,534	+		DZA65_RS08700	0.61	+0.1
1,843,534	+		DZA65_RS08700	0.61	-2.8
1,843,534	+		DZA65_RS08700	0.61	-0.6
1,843,534	+		DZA65_RS08700	0.61	+0.7
1,843,534	+		DZA65_RS08700	0.61	-1.2
1,843,535	-		DZA65_RS08700	0.61	+0.4
1,843,535	-		DZA65_RS08700	0.61	+1.4
1,843,535	-		DZA65_RS08700	0.61	-0.0
1,843,535	-		DZA65_RS08700	0.61	-3.2
1,843,535	-		DZA65_RS08700	0.61	-0.9
1,843,535	-		DZA65_RS08700	0.61	-0.9
1,843,535	-		DZA65_RS08700	0.61	+0.7
1,843,535	-		DZA65_RS08700	0.61	+0.5
1,843,535	-		DZA65_RS08700	0.61	-0.8
1,843,535	-		DZA65_RS08700	0.61	+1.8
1,843,536	+		DZA65_RS08700	0.61	-0.5
1,843,537	-		DZA65_RS08700	0.61	+0.3
1,843,567	-		DZA65_RS08700	0.65	-0.1
1,843,567	-		DZA65_RS08700	0.65	-1.4
1,843,582	+		DZA65_RS08700	0.66	-0.3
1,843,582	+		DZA65_RS08700	0.66	-1.3
1,843,582	+		DZA65_RS08700	0.66	+1.1
1,843,582	+		DZA65_RS08700	0.66	+1.7
1,843,582	+		DZA65_RS08700	0.66	-0.0
1,843,591	+		DZA65_RS08700	0.67	+0.2
1,843,591	+		DZA65_RS08700	0.67	-0.9
1,843,591	+		DZA65_RS08700	0.67	+0.0
1,843,591	+		DZA65_RS08700	0.67	+2.4
1,843,591	+		DZA65_RS08700	0.67	+0.1
1,843,592	-		DZA65_RS08700	0.67	-1.6
1,843,676	+		DZA65_RS08700	0.76	-0.6
1,843,725	+		DZA65_RS08700	0.82	-1.9
1,843,725	+		DZA65_RS08700	0.82	-0.9
1,843,726	-		DZA65_RS08700	0.82	-0.2
1,843,784	-		DZA65_RS08700	0.88	-0.2
1,843,784	-		DZA65_RS08700	0.88	+1.1
1,843,801	+		DZA65_RS08700	0.90	+0.8
1,843,801	+		DZA65_RS08700	0.90	-0.6
1,843,801	+		DZA65_RS08700	0.90	-1.2
1,843,801	+		DZA65_RS08700	0.90	-2.4
1,843,801	+		DZA65_RS08700	0.90	-0.0
1,843,801	+		DZA65_RS08700	0.90	-2.6
1,843,801	+		DZA65_RS08700	0.90	-0.2
1,843,801	+		DZA65_RS08700	0.90	-1.5
1,843,802	-		DZA65_RS08700	0.90	-0.8
1,843,802	-		DZA65_RS08700	0.90	-1.0
1,843,802	-		DZA65_RS08700	0.90	+0.7
1,843,802	-		DZA65_RS08700	0.90	-1.9
1,843,802	-		DZA65_RS08700	0.90	-0.0
1,843,802	-		DZA65_RS08700	0.90	-0.0
1,843,802	-		DZA65_RS08700	0.90	+0.8
1,843,802	-		DZA65_RS08700	0.90	+1.4
1,843,802	-		DZA65_RS08700	0.90	-1.0
1,843,802	-		DZA65_RS08700	0.90	+0.1
1,843,802	-		DZA65_RS08700	0.90	-0.3
1,843,802	-		DZA65_RS08700	0.90	-0.0
1,843,802	-		DZA65_RS08700	0.90	-2.6
1,843,836	+				-0.1
1,843,998	+		DZA65_RS08705	0.11	-0.3
1,844,039	+		DZA65_RS08705	0.16	-2.6
1,844,039	+		DZA65_RS08705	0.16	-1.6
1,844,039	+		DZA65_RS08705	0.16	-0.9
1,844,040	-		DZA65_RS08705	0.16	-0.0
1,844,040	-		DZA65_RS08705	0.16	+1.3
1,844,040	-		DZA65_RS08705	0.16	-1.6
1,844,040	-		DZA65_RS08705	0.16	-0.0
1,844,040	-		DZA65_RS08705	0.16	-2.6
1,844,040	-		DZA65_RS08705	0.16	-0.6
1,844,040	-		DZA65_RS08705	0.16	-1.1
1,844,043	+		DZA65_RS08705	0.16	+0.2
1,844,043	+		DZA65_RS08705	0.16	-0.2
1,844,043	+		DZA65_RS08705	0.16	+0.6
1,844,043	+		DZA65_RS08705	0.16	-1.1
1,844,044	-		DZA65_RS08705	0.16	+0.3
1,844,044	-		DZA65_RS08705	0.16	-0.8
1,844,129	+		DZA65_RS08705	0.26	+1.0
1,844,129	+		DZA65_RS08705	0.26	+1.1
1,844,129	+		DZA65_RS08705	0.26	-1.9
1,844,129	+		DZA65_RS08705	0.26	+0.6
1,844,129	+		DZA65_RS08705	0.26	-2.3
1,844,129	+		DZA65_RS08705	0.26	-0.8
1,844,129	+		DZA65_RS08705	0.26	-1.8
1,844,130	-		DZA65_RS08705	0.26	+0.1
1,844,130	-		DZA65_RS08705	0.26	-0.0
1,844,130	-		DZA65_RS08705	0.26	+1.2
1,844,130	-		DZA65_RS08705	0.26	-0.6
1,844,130	-		DZA65_RS08705	0.26	+0.7
1,844,130	-		DZA65_RS08705	0.26	-1.2
1,844,130	-		DZA65_RS08705	0.26	-1.8
1,844,139	+		DZA65_RS08705	0.27	+1.2
1,844,139	+		DZA65_RS08705	0.27	+0.6
1,844,139	+		DZA65_RS08705	0.27	-0.2
1,844,140	-		DZA65_RS08705	0.27	-1.9
1,844,140	-		DZA65_RS08705	0.27	+0.3
1,844,140	-		DZA65_RS08705	0.27	+0.4
1,844,141	+		DZA65_RS08705	0.27	-0.2
1,844,141	+		DZA65_RS08705	0.27	-1.6
1,844,141	+		DZA65_RS08705	0.27	+0.2
1,844,182	+		DZA65_RS08705	0.32	+2.7
1,844,202	+		DZA65_RS08705	0.34	-2.4
1,844,230	+		DZA65_RS08705	0.38	+0.3
1,844,318	+		DZA65_RS08705	0.48	-2.4
1,844,318	+		DZA65_RS08705	0.48	-1.7
1,844,319	-		DZA65_RS08705	0.48	-0.2
1,844,404	-		DZA65_RS08705	0.57	+0.7
1,844,404	-		DZA65_RS08705	0.57	-2.2
1,844,413	-		DZA65_RS08705	0.58	-2.6
1,844,442	+		DZA65_RS08705	0.62	-0.6
1,844,442	+		DZA65_RS08705	0.62	-0.4
1,844,442	+		DZA65_RS08705	0.62	-0.0
1,844,443	-		DZA65_RS08705	0.62	-0.1
1,844,443	-		DZA65_RS08705	0.62	-0.0
1,844,443	-		DZA65_RS08705	0.62	-0.8
1,844,443	-		DZA65_RS08705	0.62	-0.4
1,844,461	+		DZA65_RS08705	0.64	+0.3
1,844,462	-		DZA65_RS08705	0.64	+0.1
1,844,462	-		DZA65_RS08705	0.64	+0.8
1,844,518	+		DZA65_RS08705	0.70	+1.2
1,844,518	+		DZA65_RS08705	0.70	-0.3
1,844,518	+		DZA65_RS08705	0.70	+0.7
1,844,519	-		DZA65_RS08705	0.70	-0.1
1,844,519	-		DZA65_RS08705	0.70	-3.4
1,844,519	-		DZA65_RS08705	0.70	-0.6
1,844,519	-		DZA65_RS08705	0.70	-0.2
1,844,519	-		DZA65_RS08705	0.70	+0.5
1,844,521	+		DZA65_RS08705	0.71	-1.1
1,844,522	-		DZA65_RS08705	0.71	+1.1
1,844,522	-		DZA65_RS08705	0.71	+0.1
1,844,522	-		DZA65_RS08705	0.71	-0.4
1,844,588	+		DZA65_RS08705	0.78	-0.2
1,844,588	+		DZA65_RS08705	0.78	-0.8
1,844,588	+		DZA65_RS08705	0.78	-0.1
1,844,588	+		DZA65_RS08705	0.78	-0.4
1,844,588	+		DZA65_RS08705	0.78	+0.2
1,844,588	+		DZA65_RS08705	0.78	+2.6
1,844,588	+		DZA65_RS08705	0.78	+0.3
1,844,588	+		DZA65_RS08705	0.78	+0.2
1,844,589	-		DZA65_RS08705	0.78	+0.9
1,844,589	-		DZA65_RS08705	0.78	+1.4
1,844,589	-		DZA65_RS08705	0.78	+0.4
1,844,589	-		DZA65_RS08705	0.78	-1.6
1,844,589	-		DZA65_RS08705	0.78	+1.6
1,844,589	-		DZA65_RS08705	0.78	-0.9
1,844,724	+				+1.6
1,844,742	+				+0.9
1,844,742	+				-0.1
1,844,742	+				-1.8
1,844,743	-				-0.6
1,844,743	-				-0.9
1,844,760	+				+0.9
1,844,760	+				+0.4
1,844,760	+				-0.2
1,844,761	-				-0.1
1,844,765	+				-1.7
1,844,765	+				-0.6
1,844,765	+				-1.6
1,844,765	+				+0.2
1,844,765	+				-1.1
1,844,765	+				-0.1
1,844,765	+				-0.1
1,844,765	+				-1.9
1,844,765	+				-0.9
1,844,765	+				+0.8
1,844,766	-				-0.6
1,844,766	-				-1.2
1,844,766	-				-0.6
1,844,766	-				-1.4
1,844,766	-				-1.0
1,844,769	-				+0.8
1,844,778	+				-1.8
1,844,778	+				-0.0
1,844,865	-				+0.0
1,844,894	+		DZA65_RS08710	0.13	-0.2
1,844,894	+		DZA65_RS08710	0.13	-1.2
1,844,894	+		DZA65_RS08710	0.13	-1.0
1,844,894	+		DZA65_RS08710	0.13	-0.1
1,844,935	+		DZA65_RS08710	0.18	-2.6
1,844,936	-		DZA65_RS08710	0.18	-1.1
1,845,058	+		DZA65_RS08710	0.33	+0.2
1,845,058	+		DZA65_RS08710	0.33	-0.8
1,845,058	+		DZA65_RS08710	0.33	-0.5
1,845,058	+		DZA65_RS08710	0.33	-0.4
1,845,058	+		DZA65_RS08710	0.33	+0.1
1,845,058	+		DZA65_RS08710	0.33	-0.6
1,845,059	-		DZA65_RS08710	0.33	-0.8
1,845,059	-		DZA65_RS08710	0.33	-0.0
1,845,059	-		DZA65_RS08710	0.33	+1.8
1,845,059	-		DZA65_RS08710	0.33	-0.0
1,845,102	+				+3.0
1,845,102	+		DZA65_RS08710	0.39	-0.2
1,845,102	+		DZA65_RS08710	0.39	+0.4
1,845,103	-		DZA65_RS08710	0.39	-0.2
1,845,104	+		DZA65_RS08710	0.39	-0.2
1,845,104	+		DZA65_RS08710	0.39	-1.0
1,845,104	+		DZA65_RS08710	0.39	+1.4
1,845,104	+		DZA65_RS08710	0.39	+0.2
1,845,104	+		DZA65_RS08710	0.39	+0.8
1,845,105	-		DZA65_RS08710	0.39	-1.0
1,845,105	-		DZA65_RS08710	0.39	-0.2
1,845,105	-		DZA65_RS08710	0.39	-0.9
1,845,105	-		DZA65_RS08710	0.39	-0.6
1,845,235	-		DZA65_RS08710	0.55	-1.2
1,845,354	+		DZA65_RS08710	0.70	+1.8
1,845,354	+		DZA65_RS08710	0.70	-0.7
1,845,453	+		DZA65_RS08710	0.82	-0.7
1,845,453	+		DZA65_RS08710	0.82	+0.4
1,845,453	+		DZA65_RS08710	0.82	-1.8
1,845,453	+		DZA65_RS08710	0.82	+0.2
1,845,453	+		DZA65_RS08710	0.82	-0.4
1,845,453	+		DZA65_RS08710	0.82	-0.0
1,845,454	-		DZA65_RS08710	0.82	+0.1
1,845,454	-		DZA65_RS08710	0.82	-0.4
1,845,454	-		DZA65_RS08710	0.82	-0.3
1,845,532	-				-0.9
1,845,532	-				+0.2
1,845,532	-				-0.6
1,845,532	-				+0.2
1,845,533	+				-0.3
1,845,533	+				+1.1
1,845,534	-				+0.3
1,845,534	-				-1.6
1,845,534	-				+0.8
1,845,534	-				-2.8
1,845,534	-				-1.8
1,845,565	+				+1.4
1,845,565	+				-0.0
1,845,566	-				-0.2
1,845,566	-				+1.6
1,845,566	-				-0.9
1,845,597	+				+0.6
1,845,597	+				+0.0
1,845,598	-				+1.0
1,845,598	-				-1.9
1,845,598	-				-0.3
1,845,598	-				-2.6
1,845,637	-				-0.1
1,845,686	-		DZA65_RS08715	0.11	-0.7
1,845,686	-		DZA65_RS08715	0.11	+1.2
1,845,759	-		DZA65_RS08715	0.20	+0.4