Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08470

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,785,525	+		DZA65_RS08460	0.87	-0.3
1,785,525	+		DZA65_RS08460	0.87	-1.0
1,785,525	+		DZA65_RS08460	0.87	-1.6
1,785,525	+		DZA65_RS08460	0.87	+0.2
1,785,526	-		DZA65_RS08460	0.87	-1.2
1,785,526	-		DZA65_RS08460	0.87	+2.6
1,785,526	-		DZA65_RS08460	0.87	-0.4
1,785,583	-				+0.0
1,785,623	-				-2.7
1,785,633	+				-0.3
1,785,634	-				+0.4
1,785,634	-				+1.1
1,785,634	-				+2.3
1,785,636	+				+0.6
1,785,636	+				+1.1
1,785,636	+				-0.3
1,785,636	+				+1.6
1,785,637	-				-1.4
1,785,637	-				-2.6
1,785,637	-				-1.1
1,785,637	-				+0.8
1,786,039	+		DZA65_RS08465	0.47	+0.4
1,786,046	+		DZA65_RS08465	0.48	+0.4
1,786,046	+		DZA65_RS08465	0.48	-0.1
1,786,046	+		DZA65_RS08465	0.48	+1.2
1,786,046	+		DZA65_RS08465	0.48	-1.9
1,786,046	+		DZA65_RS08465	0.48	-1.1
1,786,046	+		DZA65_RS08465	0.48	+0.4
1,786,046	+		DZA65_RS08465	0.48	-0.3
1,786,046	+		DZA65_RS08465	0.48	+0.7
1,786,046	+		DZA65_RS08465	0.48	+0.0
1,786,047	-		DZA65_RS08465	0.48	-0.6
1,786,047	-		DZA65_RS08465	0.48	+0.0
1,786,047	-		DZA65_RS08465	0.48	-1.0
1,786,047	-		DZA65_RS08465	0.48	+0.4
1,786,047	-		DZA65_RS08465	0.48	+0.3
1,786,047	-		DZA65_RS08465	0.48	+0.9
1,786,047	-		DZA65_RS08465	0.48	-1.0
1,786,047	-		DZA65_RS08465	0.48	+0.7
1,786,047	-		DZA65_RS08465	0.48	-1.7
1,786,047	-		DZA65_RS08465	0.48	+1.0
1,786,047	-		DZA65_RS08465	0.48	+0.1
1,786,115	-		DZA65_RS08465	0.56	-0.7
1,786,115	-		DZA65_RS08465	0.56	+0.8
1,786,201	+		DZA65_RS08465	0.66	-0.9
1,786,202	-		DZA65_RS08465	0.66	-0.9
1,786,202	-		DZA65_RS08465	0.66	+1.2
1,786,202	-		DZA65_RS08465	0.66	-1.3
1,786,382	+		DZA65_RS08465	0.87	-0.2
1,786,383	-		DZA65_RS08465	0.87	-0.3
1,786,383	-		DZA65_RS08465	0.87	-0.4
1,786,383	-		DZA65_RS08465	0.87	-0.4
1,786,383	-		DZA65_RS08465	0.87	-1.2
1,786,383	-		DZA65_RS08465	0.87	+0.4
1,786,393	-		DZA65_RS08465	0.88	-0.6
1,786,393	-		DZA65_RS08465	0.88	+1.2
1,786,393	-				+1.0
1,786,433	+				-0.4
1,786,455	+				-0.2
1,786,455	+				+0.8
1,786,455	+				-0.1
1,786,455	+				+0.1
1,786,455	+				-1.3
1,786,455	+				+0.4
1,786,455	+				-0.4
1,786,455	+				+1.2
1,786,455	+				+0.4
1,786,455	+				-2.3
1,786,455	+				-0.9
1,786,455	+				-1.7
1,786,456	-				+1.6
1,786,456	-				+0.7
1,786,456	-				+0.8
1,786,456	-				-1.1
1,786,456	-				-1.4
1,786,456	-				-3.6
1,786,456	-				-2.2
1,786,456	-				-0.8
1,786,456	-				+0.1
1,786,456	-				+0.0
1,786,456	-				-0.9
1,786,456	-				+0.4
1,786,456	-				+0.2
1,786,456	-				+0.0
1,786,456	-				-0.2
1,786,456	-				-0.6
1,786,456	-				-1.2
1,786,456	-				-0.5
1,786,456	-				-2.2
1,786,456	-				+1.2
1,786,456	-				+0.2
1,786,456	-				-0.6
1,786,456	-				-0.4
1,786,552	+				+1.3
1,786,642	+		DZA65_RS08470	0.18	-2.0
1,786,829	+		DZA65_RS08470	0.38	+0.7
1,786,848	+		DZA65_RS08470	0.40	-1.9
1,786,848	+		DZA65_RS08470	0.40	+0.8
1,786,848	+		DZA65_RS08470	0.40	-0.9
1,786,848	+		DZA65_RS08470	0.40	+0.6
1,786,849	-		DZA65_RS08470	0.41	-0.1
1,786,849	-		DZA65_RS08470	0.41	-0.8
1,786,849	-		DZA65_RS08470	0.41	-0.9
1,786,849	-		DZA65_RS08470	0.41	-2.2
1,786,849	-		DZA65_RS08470	0.41	-0.2
1,787,005	-		DZA65_RS08470	0.58	-1.1
1,787,106	+		DZA65_RS08470	0.69	+1.1
1,787,106	+		DZA65_RS08470	0.69	+1.4
1,787,107	-		DZA65_RS08470	0.69	-1.6
1,787,107	-		DZA65_RS08470	0.69	-0.2
1,787,128	+		DZA65_RS08470	0.72	-0.9
1,787,128	+		DZA65_RS08470	0.72	-1.6
1,787,129	-		DZA65_RS08470	0.72	-2.2
1,787,129	-		DZA65_RS08470	0.72	-2.0
1,787,192	+		DZA65_RS08470	0.79	+0.4
1,787,326	+				-0.3
1,787,327	-				+0.4
1,787,386	+				-1.0
1,787,386	+				+1.0
1,787,386	+				+0.6
1,787,387	-				+0.2
1,787,387	-				+0.4
1,787,387	-				+0.7
1,787,408	+				-0.3
1,787,408	+				+0.2
1,787,409	-				-0.8
1,787,409	-				+0.4
1,787,409	-				-3.0
1,787,409	-				+0.4
1,787,420	+				-0.2
1,787,421	-				-0.2
1,787,433	+				+0.8
1,787,475	+		DZA65_RS08475	0.11	-0.6
1,787,475	+		DZA65_RS08475	0.11	-2.2
1,787,475	+		DZA65_RS08475	0.11	-1.4
1,787,475	+		DZA65_RS08475	0.11	-0.9
1,787,475	+		DZA65_RS08475	0.11	-1.3
1,787,475	+		DZA65_RS08475	0.11	+0.1
1,787,475	+		DZA65_RS08475	0.11	-1.4
1,787,475	+		DZA65_RS08475	0.11	+1.0
1,787,475	+		DZA65_RS08475	0.11	-3.2
1,787,475	+		DZA65_RS08475	0.11	-0.0
1,787,476	-		DZA65_RS08475	0.11	+0.6
1,787,476	-		DZA65_RS08475	0.11	+0.4
1,787,476	-		DZA65_RS08475	0.11	+0.4
1,787,490	+		DZA65_RS08475	0.12	-0.4
1,787,646	+		DZA65_RS08475	0.29	+0.4
1,787,646	+		DZA65_RS08475	0.29	-1.4
1,787,646	+		DZA65_RS08475	0.29	+0.8
1,787,646	+		DZA65_RS08475	0.29	-1.0
1,787,646	+		DZA65_RS08475	0.29	+0.1
1,787,646	+		DZA65_RS08475	0.29	-0.6
1,787,647	-		DZA65_RS08475	0.29	+0.0
1,787,647	-				+1.7
1,787,647	-		DZA65_RS08475	0.29	+0.1
1,787,647	-		DZA65_RS08475	0.29	+0.3
1,787,647	-		DZA65_RS08475	0.29	+1.1
1,787,664	+		DZA65_RS08475	0.31	+0.4
1,787,664	+		DZA65_RS08475	0.31	-0.3
1,787,680	-		DZA65_RS08475	0.33	-1.4
1,787,728	+		DZA65_RS08475	0.38	-1.4
1,787,729	-		DZA65_RS08475	0.38	-0.4
1,787,729	-		DZA65_RS08475	0.38	+0.8
1,787,729	-		DZA65_RS08475	0.38	+0.2
1,787,767	+		DZA65_RS08475	0.42	-0.8
1,787,802	+		DZA65_RS08475	0.46	+0.3
1,787,803	-		DZA65_RS08475	0.46	-0.4
1,787,803	-		DZA65_RS08475	0.46	+0.8
1,787,803	-		DZA65_RS08475	0.46	-0.8
1,787,855	+		DZA65_RS08475	0.52	+0.3
1,787,859	+		DZA65_RS08475	0.52	-0.6
1,787,859	+		DZA65_RS08475	0.52	-1.3
1,787,859	+		DZA65_RS08475	0.52	-1.3
1,787,860	-		DZA65_RS08475	0.53	+0.3
1,787,913	+		DZA65_RS08475	0.58	-0.7
1,787,913	+		DZA65_RS08475	0.58	-2.9
1,787,914	-		DZA65_RS08475	0.58	+0.4
1,787,930	-		DZA65_RS08475	0.60	+2.8
1,787,969	+		DZA65_RS08475	0.64	-0.9
1,787,970	-		DZA65_RS08475	0.64	+1.0
1,788,082	-		DZA65_RS08475	0.77	-0.7
1,788,164	-		DZA65_RS08475	0.86	-0.2
1,788,164	-		DZA65_RS08475	0.86	-0.9
1,788,169	+		DZA65_RS08475	0.86	+0.9
1,788,170	-		DZA65_RS08475	0.86	+1.4
1,788,323	-				-0.5
1,788,328	+				+0.8
1,788,328	+				+0.6
1,788,328	+				-1.2
1,788,328	+				-0.2
1,788,329	-				+0.5
1,788,329	-				-0.6
1,788,329	-				+0.0
1,788,329	-				+0.4
1,788,329	-				-1.2
1,788,329	-				+0.8
1,788,329	-				-0.2
1,788,329	-				-0.2
1,788,329	-				+0.4
1,788,329	-				-1.2
1,788,329	-				-2.6
1,788,380	+				-1.0
1,788,380	+				-0.1
1,788,380	+				-0.8
1,788,381	-				-1.6
1,788,381	-				-0.2
1,788,381	-				-2.2